Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15265

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,499,759	-		DDA3937_RS15260	0.33	-1.0
3,499,936	+		DDA3937_RS15260	0.47	-0.4
3,499,999	+		DDA3937_RS15260	0.52	-0.9
3,499,999	+		DDA3937_RS15260	0.52	-2.4
3,499,999	+		DDA3937_RS15260	0.52	-0.3
3,499,999	+		DDA3937_RS15260	0.52	+2.2
3,499,999	+		DDA3937_RS15260	0.52	+0.0
3,500,000	-		DDA3937_RS15260	0.52	+0.2
3,500,000	-		DDA3937_RS15260	0.52	-2.5
3,500,000	-		DDA3937_RS15260	0.52	-1.4
3,500,000	-		DDA3937_RS15260	0.52	-0.7
3,500,120	+		DDA3937_RS15260	0.62	-0.9
3,500,154	+		DDA3937_RS15260	0.65	-1.9
3,500,155	-		DDA3937_RS15260	0.65	-0.7
3,500,155	-		DDA3937_RS15260	0.65	+1.0
3,500,155	-		DDA3937_RS15260	0.65	-0.8
3,500,155	-		DDA3937_RS15260	0.65	-0.9
3,500,155	-		DDA3937_RS15260	0.65	+0.7
3,500,155	-		DDA3937_RS15260	0.65	-3.3
3,500,182	-		DDA3937_RS15260	0.67	-1.2
3,500,182	-		DDA3937_RS15260	0.67	-1.0
3,500,182	-		DDA3937_RS15260	0.67	-1.0
3,500,435	+		DDA3937_RS15260	0.87	+0.1
3,500,436	-		DDA3937_RS15260	0.87	-1.3
3,500,574	+				-0.2
3,500,574	+				-1.6
3,500,657	+				+0.0
3,500,657	+				-1.4
3,500,716	+				-0.7
3,500,716	+				-1.0
3,500,716	+				-1.0
3,500,716	+				-1.1
3,500,717	-				+1.7
3,500,717	-				-2.5
3,500,717	-				-1.6
3,500,717	-				-0.9
3,500,780	+				-0.9
3,500,780	+				-0.9
3,500,780	+				+1.5
3,500,780	+				+0.6
3,500,780	+				-0.6
3,500,780	+				-0.5
3,500,780	+				-2.1
3,500,780	+				-1.2
3,500,780	+				-1.3
3,500,780	+				-0.3
3,500,780	+				-0.7
3,500,781	-				-0.5
3,500,781	-				-0.7
3,500,781	-				-2.6
3,500,781	-				-0.9
3,500,781	-				-0.2
3,500,781	-				+0.5
3,500,781	-				-0.9
3,500,781	-				-1.1
3,500,781	-				-2.6
3,500,787	+				-0.3
3,500,788	-				-0.5
3,500,855	+				-1.6
3,500,855	+				-0.2
3,500,856	-				-0.6
3,500,856	-				-2.7
3,500,856	-				-0.0
3,500,927	+		DDA3937_RS15265	0.11	+0.3
3,500,927	+				+0.7
3,500,928	-		DDA3937_RS15265	0.11	-0.2
3,500,928	-		DDA3937_RS15265	0.11	-1.7
3,500,928	-		DDA3937_RS15265	0.11	-0.6
3,501,021	+		DDA3937_RS15265	0.14	-1.5
3,501,022	-		DDA3937_RS15265	0.14	-2.0
3,501,104	+		DDA3937_RS15265	0.16	-0.6
3,501,105	-		DDA3937_RS15265	0.16	-1.9
3,501,105	-		DDA3937_RS15265	0.16	+0.7
3,501,197	+		DDA3937_RS15265	0.19	-0.4
3,501,197	+		DDA3937_RS15265	0.19	-0.9
3,501,198	-		DDA3937_RS15265	0.19	+0.2
3,501,226	-		DDA3937_RS15265	0.20	-0.5
3,501,374	+		DDA3937_RS15265	0.25	-1.9
3,501,374	+		DDA3937_RS15265	0.25	+0.7
3,501,375	-		DDA3937_RS15265	0.25	-2.2
3,501,375	-		DDA3937_RS15265	0.25	-0.3
3,501,375	-		DDA3937_RS15265	0.25	-3.3
3,501,444	+		DDA3937_RS15265	0.27	-1.1
3,501,444	+		DDA3937_RS15265	0.27	-0.5
3,501,445	-		DDA3937_RS15265	0.27	-0.6
3,501,445	-		DDA3937_RS15265	0.27	-0.6
3,501,445	-		DDA3937_RS15265	0.27	-2.1
3,501,445	-		DDA3937_RS15265	0.27	+2.7
3,501,445	-		DDA3937_RS15265	0.27	-2.3
3,501,514	+		DDA3937_RS15265	0.29	-0.9
3,501,514	+		DDA3937_RS15265	0.29	-1.0
3,501,514	+				-1.3
3,501,514	+		DDA3937_RS15265	0.29	-0.7
3,501,515	-		DDA3937_RS15265	0.29	+0.2
3,501,515	-		DDA3937_RS15265	0.29	-2.0
3,501,515	-		DDA3937_RS15265	0.29	-0.3
3,501,515	-				+0.3
3,501,515	-		DDA3937_RS15265	0.29	-2.3
3,501,515	-		DDA3937_RS15265	0.29	+1.3
3,501,515	-		DDA3937_RS15265	0.29	-1.3
3,501,605	+		DDA3937_RS15265	0.32	+0.7
3,501,606	-		DDA3937_RS15265	0.32	+0.2
3,501,638	-		DDA3937_RS15265	0.33	-1.7
3,501,670	+		DDA3937_RS15265	0.34	-0.7
3,501,671	-		DDA3937_RS15265	0.34	-0.6
3,501,671	-		DDA3937_RS15265	0.34	-1.7
3,501,684	+		DDA3937_RS15265	0.35	-2.6
3,501,684	+		DDA3937_RS15265	0.35	-1.3
3,501,685	-		DDA3937_RS15265	0.35	-0.0
3,501,685	-		DDA3937_RS15265	0.35	+0.5
3,501,752	+		DDA3937_RS15265	0.37	-1.3
3,501,752	+		DDA3937_RS15265	0.37	-2.9
3,501,768	+		DDA3937_RS15265	0.37	-0.0
3,501,769	-		DDA3937_RS15265	0.37	-0.3
3,501,874	-		DDA3937_RS15265	0.41	-0.6
3,501,874	-		DDA3937_RS15265	0.41	-1.6
3,501,874	-		DDA3937_RS15265	0.41	-0.3
3,501,936	-		DDA3937_RS15265	0.43	-1.2
3,501,936	-		DDA3937_RS15265	0.43	-1.3
3,501,941	+		DDA3937_RS15265	0.43	-0.5
3,501,989	+		DDA3937_RS15265	0.44	-0.9
3,501,990	-		DDA3937_RS15265	0.45	-2.3
3,502,139	+		DDA3937_RS15265	0.49	-0.6
3,502,205	-		DDA3937_RS15265	0.51	-1.1
3,502,224	-		DDA3937_RS15265	0.52	+1.0
3,502,269	+		DDA3937_RS15265	0.53	-1.3
3,502,269	+		DDA3937_RS15265	0.53	-0.9
3,502,269	+		DDA3937_RS15265	0.53	-0.7
3,502,269	+		DDA3937_RS15265	0.53	-2.3
3,502,269	+		DDA3937_RS15265	0.53	-1.6
3,502,270	-		DDA3937_RS15265	0.53	-1.7
3,502,270	-		DDA3937_RS15265	0.53	-1.1
3,502,270	-		DDA3937_RS15265	0.53	+0.5
3,502,270	-		DDA3937_RS15265	0.53	-1.0
3,502,270	-		DDA3937_RS15265	0.53	-0.6
3,502,270	-		DDA3937_RS15265	0.53	-4.0
3,502,271	+		DDA3937_RS15265	0.53	-0.2
3,502,271	+		DDA3937_RS15265	0.53	-0.6
3,502,271	+				-2.1
3,502,394	+		DDA3937_RS15265	0.57	-0.4
3,502,518	-		DDA3937_RS15265	0.61	-1.3
3,502,610	+		DDA3937_RS15265	0.64	-0.9
3,502,632	+		DDA3937_RS15265	0.65	-0.1
3,502,720	+		DDA3937_RS15265	0.68	-0.9
3,502,720	+		DDA3937_RS15265	0.68	-1.3
3,502,720	+		DDA3937_RS15265	0.68	+0.3
3,502,833	+		DDA3937_RS15265	0.71	-0.0
3,502,833	+		DDA3937_RS15265	0.71	-0.7
3,502,833	+		DDA3937_RS15265	0.71	-1.9
3,502,869	+		DDA3937_RS15265	0.72	-1.3
3,502,869	+		DDA3937_RS15265	0.72	-2.3
3,502,870	-		DDA3937_RS15265	0.73	+1.1
3,502,870	-		DDA3937_RS15265	0.73	-1.4
3,502,870	-		DDA3937_RS15265	0.73	-0.6
3,503,074	+		DDA3937_RS15265	0.79	+1.1
3,503,074	+				-0.9
3,503,075	-		DDA3937_RS15265	0.79	-1.3
3,503,151	-		DDA3937_RS15265	0.81	-0.7
3,503,241	+		DDA3937_RS15265	0.84	-1.9
3,503,241	+		DDA3937_RS15265	0.84	-2.3
3,503,241	+		DDA3937_RS15265	0.84	-1.7
3,503,241	+		DDA3937_RS15265	0.84	-0.5
3,503,241	+		DDA3937_RS15265	0.84	+0.1
3,503,241	+		DDA3937_RS15265	0.84	-0.9
3,503,241	+		DDA3937_RS15265	0.84	+0.0
3,503,241	+		DDA3937_RS15265	0.84	-0.9
3,503,241	+		DDA3937_RS15265	0.84	-0.8
3,503,241	+		DDA3937_RS15265	0.84	-1.0
3,503,241	+		DDA3937_RS15265	0.84	-2.6
3,503,241	+		DDA3937_RS15265	0.84	-0.6
3,503,241	+				+0.1
3,503,242	-		DDA3937_RS15265	0.84	-1.2
3,503,242	-		DDA3937_RS15265	0.84	-0.3
3,503,242	-				+0.3
3,503,242	-		DDA3937_RS15265	0.84	-0.1
3,503,242	-		DDA3937_RS15265	0.84	-1.6
3,503,242	-		DDA3937_RS15265	0.84	-0.0
3,503,242	-		DDA3937_RS15265	0.84	-1.9
3,503,242	-		DDA3937_RS15265	0.84	+1.0
3,503,242	-		DDA3937_RS15265	0.84	-2.5
3,503,242	-		DDA3937_RS15265	0.84	-1.6
3,503,242	-		DDA3937_RS15265	0.84	-1.4
3,503,242	-		DDA3937_RS15265	0.84	-2.5
3,503,242	-		DDA3937_RS15265	0.84	-1.7
3,503,243	+		DDA3937_RS15265	0.84	-0.6
3,503,243	+		DDA3937_RS15265	0.84	-1.6
3,503,244	-		DDA3937_RS15265	0.84	+0.1
3,503,244	-		DDA3937_RS15265	0.84	-3.0
3,503,263	-		DDA3937_RS15265	0.85	-1.3
3,503,288	+		DDA3937_RS15265	0.86	-0.1
3,503,470	-				-1.7
3,503,481	+				-0.9
3,503,481	+				-0.8
3,503,481	+				+0.7
3,503,482	-				+1.1
3,503,584	+				-0.3
3,503,606	+				+0.3
3,503,606	+				+0.6
3,503,607	-				-0.3
3,503,635	+				-1.1
3,503,635	+				-3.2
3,503,636	-				-1.5
3,503,636	-				-0.0
3,503,664	+				-1.0
3,503,664	+				-2.3
3,503,665	-				+0.7
3,503,665	-				-2.9
3,503,665	-				-0.6
3,503,806	-				-1.1
3,503,853	-				-0.1
3,504,110	+		DDA3937_RS15270	0.12	-2.5
3,504,124	-		DDA3937_RS15270	0.13	-0.7
3,504,170	-		DDA3937_RS15270	0.14	-0.4
3,504,173	+		DDA3937_RS15270	0.14	-1.5
3,504,173	+		DDA3937_RS15270	0.14	-1.9
3,504,174	-		DDA3937_RS15270	0.14	-0.3
3,504,191	+		DDA3937_RS15270	0.15	-0.7
3,504,191	+		DDA3937_RS15270	0.15	-2.6
3,504,192	-		DDA3937_RS15270	0.15	-0.9
3,504,192	-		DDA3937_RS15270	0.15	-1.4
3,504,197	+		DDA3937_RS15270	0.15	-1.5
3,504,197	+		DDA3937_RS15270	0.15	-1.3
3,504,198	-		DDA3937_RS15270	0.15	-0.1
3,504,266	-		DDA3937_RS15270	0.17	-2.6
3,504,266	-		DDA3937_RS15270	0.17	-1.1
3,504,408	-				-0.3
3,504,470	+		DDA3937_RS15270	0.24	-1.6
3,504,470	+		DDA3937_RS15270	0.24	-1.0
3,504,471	-		DDA3937_RS15270	0.24	-1.4
3,504,471	-		DDA3937_RS15270	0.24	-2.1
3,504,471	-		DDA3937_RS15270	0.24	-2.1
3,504,471	-		DDA3937_RS15270	0.24	-0.6
3,504,648	+		DDA3937_RS15270	0.30	-1.5
3,504,648	+		DDA3937_RS15270	0.30	-0.3
3,504,648	+		DDA3937_RS15270	0.30	+0.5
3,504,649	-		DDA3937_RS15270	0.30	-1.1
3,504,649	-		DDA3937_RS15270	0.30	-1.0
3,504,655	+		DDA3937_RS15270	0.30	+1.7
3,504,656	-		DDA3937_RS15270	0.30	-1.7
3,504,656	-		DDA3937_RS15270	0.30	-1.1