Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15260

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,498,410	+		DDA3937_RS15255	0.39	+3.9
3,498,412	+				-1.6
3,498,412	+		DDA3937_RS15255	0.39	-1.3
3,498,413	-		DDA3937_RS15255	0.39	+1.5
3,498,449	+		DDA3937_RS15255	0.42	-0.0
3,498,449	+		DDA3937_RS15255	0.42	-0.9
3,498,449	+				+0.3
3,498,449	+		DDA3937_RS15255	0.42	+0.1
3,498,450	-		DDA3937_RS15255	0.42	+0.1
3,498,450	-		DDA3937_RS15255	0.42	-0.3
3,498,450	-		DDA3937_RS15255	0.42	+1.2
3,498,504	-		DDA3937_RS15255	0.47	+3.5
3,498,504	-		DDA3937_RS15255	0.47	-1.6
3,498,504	-		DDA3937_RS15255	0.47	+0.7
3,498,528	-		DDA3937_RS15255	0.49	-0.3
3,498,671	+		DDA3937_RS15255	0.61	-2.7
3,498,672	-		DDA3937_RS15255	0.61	+1.4
3,498,800	+		DDA3937_RS15255	0.72	-3.0
3,498,801	-		DDA3937_RS15255	0.72	+0.7
3,498,809	+		DDA3937_RS15255	0.72	-1.6
3,498,810	-				+1.3
3,498,865	+		DDA3937_RS15255	0.77	-1.6
3,498,865	+		DDA3937_RS15255	0.77	-0.5
3,499,079	+				-0.5
3,499,133	+				+1.9
3,499,178	+				+0.1
3,499,217	+				-1.9
3,499,231	+				+0.7
3,499,231	+				+1.1
3,499,231	+				+0.6
3,499,231	+				+3.4
3,499,231	+				-2.7
3,499,232	-				-1.7
3,499,232	-				-0.6
3,499,232	-				-1.1
3,499,232	-				+0.8
3,499,232	-				+0.7
3,499,240	+				+0.3
3,499,241	-				-0.5
3,499,241	-				+0.7
3,499,241	-				+0.1
3,499,241	-				-1.4
3,499,278	+				-0.5
3,499,286	+				+0.8
3,499,286	+				+0.5
3,499,310	-				-0.7
3,499,343	+				-1.2
3,499,343	+				-0.1
3,499,344	-				-1.6
3,499,344	-				-0.1
3,499,344	-				+1.1
3,499,347	+				-1.0
3,499,347	+				-1.9
3,499,347	+				+1.5
3,499,347	+				-0.5
3,499,348	-				-0.3
3,499,348	-				-2.3
3,499,364	+				-2.7
3,499,380	-				-1.5
3,499,573	+		DDA3937_RS15260	0.18	-1.1
3,499,573	+		DDA3937_RS15260	0.18	+1.3
3,499,573	+		DDA3937_RS15260	0.18	-0.5
3,499,576	+		DDA3937_RS15260	0.18	-2.0
3,499,577	-		DDA3937_RS15260	0.18	-2.9
3,499,577	-		DDA3937_RS15260	0.18	-0.9
3,499,577	-		DDA3937_RS15260	0.18	-2.1
3,499,577	-		DDA3937_RS15260	0.18	-0.6
3,499,577	-		DDA3937_RS15260	0.18	-1.9
3,499,577	-		DDA3937_RS15260	0.18	-2.4
3,499,577	-		DDA3937_RS15260	0.18	-1.8
3,499,577	-		DDA3937_RS15260	0.18	-1.1
3,499,759	-		DDA3937_RS15260	0.33	-1.0
3,499,936	+		DDA3937_RS15260	0.47	-0.4
3,499,999	+		DDA3937_RS15260	0.52	-0.9
3,499,999	+		DDA3937_RS15260	0.52	-2.4
3,499,999	+		DDA3937_RS15260	0.52	-0.3
3,499,999	+		DDA3937_RS15260	0.52	+2.2
3,499,999	+		DDA3937_RS15260	0.52	+0.0
3,500,000	-		DDA3937_RS15260	0.52	+0.2
3,500,000	-		DDA3937_RS15260	0.52	-2.5
3,500,000	-		DDA3937_RS15260	0.52	-1.4
3,500,000	-		DDA3937_RS15260	0.52	-0.7
3,500,120	+		DDA3937_RS15260	0.62	-0.9
3,500,154	+		DDA3937_RS15260	0.65	-1.9
3,500,155	-		DDA3937_RS15260	0.65	-0.7
3,500,155	-		DDA3937_RS15260	0.65	+1.0
3,500,155	-		DDA3937_RS15260	0.65	-0.8
3,500,155	-		DDA3937_RS15260	0.65	-0.9
3,500,155	-		DDA3937_RS15260	0.65	+0.7
3,500,155	-		DDA3937_RS15260	0.65	-3.3
3,500,182	-		DDA3937_RS15260	0.67	-1.2
3,500,182	-		DDA3937_RS15260	0.67	-1.0
3,500,182	-		DDA3937_RS15260	0.67	-1.0
3,500,435	+		DDA3937_RS15260	0.87	+0.1
3,500,436	-		DDA3937_RS15260	0.87	-1.3
3,500,574	+				-0.2
3,500,574	+				-1.6
3,500,657	+				+0.0
3,500,657	+				-1.4
3,500,716	+				-0.7
3,500,716	+				-1.0
3,500,716	+				-1.0
3,500,716	+				-1.1
3,500,717	-				+1.7
3,500,717	-				-2.5
3,500,717	-				-1.6
3,500,717	-				-0.9
3,500,780	+				-0.9
3,500,780	+				-0.9
3,500,780	+				+1.5
3,500,780	+				+0.6
3,500,780	+				-0.6
3,500,780	+				-0.5
3,500,780	+				-2.1
3,500,780	+				-1.2
3,500,780	+				-1.3
3,500,780	+				-0.3
3,500,780	+				-0.7
3,500,781	-				-0.5
3,500,781	-				-0.7
3,500,781	-				-2.6
3,500,781	-				-0.9
3,500,781	-				-0.2
3,500,781	-				+0.5
3,500,781	-				-0.9
3,500,781	-				-1.1
3,500,781	-				-2.6
3,500,787	+				-0.3
3,500,788	-				-0.5
3,500,855	+				-1.6
3,500,855	+				-0.2
3,500,856	-				-0.6
3,500,856	-				-2.7
3,500,856	-				-0.0
3,500,927	+		DDA3937_RS15265	0.11	+0.3
3,500,927	+				+0.7
3,500,928	-		DDA3937_RS15265	0.11	-0.2
3,500,928	-		DDA3937_RS15265	0.11	-1.7
3,500,928	-		DDA3937_RS15265	0.11	-0.6
3,501,021	+		DDA3937_RS15265	0.14	-1.5
3,501,022	-		DDA3937_RS15265	0.14	-2.0
3,501,104	+		DDA3937_RS15265	0.16	-0.6
3,501,105	-		DDA3937_RS15265	0.16	-1.9
3,501,105	-		DDA3937_RS15265	0.16	+0.7
3,501,197	+		DDA3937_RS15265	0.19	-0.4
3,501,197	+		DDA3937_RS15265	0.19	-0.9
3,501,198	-		DDA3937_RS15265	0.19	+0.2
3,501,226	-		DDA3937_RS15265	0.20	-0.5
3,501,374	+		DDA3937_RS15265	0.25	-1.9
3,501,374	+		DDA3937_RS15265	0.25	+0.7
3,501,375	-		DDA3937_RS15265	0.25	-2.2
3,501,375	-		DDA3937_RS15265	0.25	-0.3
3,501,375	-		DDA3937_RS15265	0.25	-3.3
3,501,444	+		DDA3937_RS15265	0.27	-1.1
3,501,444	+		DDA3937_RS15265	0.27	-0.5
3,501,445	-		DDA3937_RS15265	0.27	-0.6
3,501,445	-		DDA3937_RS15265	0.27	-0.6
3,501,445	-		DDA3937_RS15265	0.27	-2.1
3,501,445	-		DDA3937_RS15265	0.27	+2.7
3,501,445	-		DDA3937_RS15265	0.27	-2.3
3,501,514	+		DDA3937_RS15265	0.29	-0.9
3,501,514	+		DDA3937_RS15265	0.29	-1.0
3,501,514	+				-1.3
3,501,514	+		DDA3937_RS15265	0.29	-0.7
3,501,515	-		DDA3937_RS15265	0.29	+0.2
3,501,515	-		DDA3937_RS15265	0.29	-2.0
3,501,515	-		DDA3937_RS15265	0.29	-0.3
3,501,515	-				+0.3
3,501,515	-		DDA3937_RS15265	0.29	-2.3
3,501,515	-		DDA3937_RS15265	0.29	+1.3
3,501,515	-		DDA3937_RS15265	0.29	-1.3