Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS14325 and DDA3937_RS14330 are separated by 117 nucleotides DDA3937_RS14330 and DDA3937_RS14335 are separated by 19 nucleotides DDA3937_RS14335 and DDA3937_RS14340 are separated by 636 nucleotides
DDA3937_RS14325: DDA3937_RS14325 - NADH-quinone oxidoreductase subunit C/D, at 3,283,992 to 3,285,791
_RS14325
DDA3937_RS14330: DDA3937_RS14330 - NADH-quinone oxidoreductase subunit B, at 3,285,909 to 3,286,583
_RS14330
DDA3937_RS14335: DDA3937_RS14335 - NADH-quinone oxidoreductase subunit A, at 3,286,603 to 3,287,046
_RS14335
DDA3937_RS14340: DDA3937_RS14340 - transcriptional regulator LrhA, at 3,287,683 to 3,288,633
_RS14340
Position (kb)
3286
3287
3288 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3285.810 kb on - strand at 3285.819 kb on - strand at 3285.890 kb on - strand at 3286.605 kb on - strand at 3287.154 kb on - strand at 3287.195 kb on - strand at 3287.195 kb on - strand at 3287.195 kb on - strand at 3287.198 kb on + strand at 3287.237 kb on - strand at 3287.357 kb on + strand at 3287.389 kb on + strand at 3287.390 kb on - strand at 3287.390 kb on - strand at 3287.396 kb on - strand at 3287.396 kb on - strand at 3287.398 kb on + strand at 3287.399 kb on - strand at 3287.404 kb on + strand at 3287.436 kb on + strand at 3287.436 kb on + strand at 3287.436 kb on + strand at 3287.436 kb on + strand at 3287.437 kb on - strand at 3287.442 kb on - strand at 3287.444 kb on + strand at 3287.548 kb on + strand at 3287.549 kb on - strand at 3287.552 kb on - strand at 3287.575 kb on + strand at 3287.575 kb on + strand at 3287.575 kb on + strand at 3287.575 kb on + strand at 3287.576 kb on - strand at 3287.576 kb on - strand at 3287.576 kb on - strand at 3287.576 kb on - strand at 3287.577 kb on + strand at 3287.577 kb on + strand at 3287.577 kb on + strand at 3287.577 kb on + strand at 3287.577 kb on + strand at 3287.578 kb on - strand at 3287.578 kb on - strand at 3287.644 kb on + strand at 3287.645 kb on - strand at 3287.673 kb on - strand at 3287.681 kb on - strand at 3287.681 kb on - strand at 3287.689 kb on - strand at 3287.689 kb on - strand at 3287.692 kb on - strand at 3287.840 kb on + strand, within DDA3937_RS14340 at 3287.840 kb on + strand, within DDA3937_RS14340 at 3287.973 kb on + strand, within DDA3937_RS14340 at 3287.974 kb on - strand, within DDA3937_RS14340 at 3287.974 kb on - strand, within DDA3937_RS14340 at 3287.984 kb on + strand, within DDA3937_RS14340 at 3288.004 kb on - strand, within DDA3937_RS14340
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,285,810 - -1.0 3,285,819 - -1.0 3,285,890 - -0.1 3,286,605 - +0.7 3,287,154 - -0.4 3,287,195 - +0.8 3,287,195 - +0.6 3,287,195 - -1.2 3,287,198 + -0.4 3,287,237 - +0.2 3,287,357 + -0.3 3,287,389 + +1.9 3,287,390 - -1.6 3,287,390 - +1.1 3,287,396 - +1.1 3,287,396 - -2.6 3,287,398 + +1.6 3,287,399 - +1.1 3,287,404 + -0.4 3,287,436 + -1.1 3,287,436 + +1.1 3,287,436 + +0.1 3,287,436 + -1.6 3,287,437 - +3.8 3,287,442 - +2.1 3,287,444 + +1.8 3,287,548 + -1.3 3,287,549 - +0.8 3,287,552 - -1.8 3,287,575 + +0.2 3,287,575 + -0.2 3,287,575 + -1.8 3,287,575 + -0.3 3,287,576 - -0.7 3,287,576 - +0.8 3,287,576 - -0.0 3,287,576 - -0.4 3,287,577 + -0.1 3,287,577 + -1.2 3,287,577 + -2.6 3,287,577 + -1.3 3,287,577 + +1.0 3,287,578 - +1.9 3,287,578 - +0.3 3,287,644 + -1.1 3,287,645 - +1.0 3,287,673 - -0.2 3,287,681 - -0.9 3,287,681 - -0.2 3,287,689 - +0.6 3,287,689 - -2.2 3,287,692 - +0.4 3,287,840 + DDA3937_RS14340 0.17 +0.6 3,287,840 + DDA3937_RS14340 0.17 +1.2 3,287,973 + DDA3937_RS14340 0.30 -1.4 3,287,974 - DDA3937_RS14340 0.31 +1.3 3,287,974 - DDA3937_RS14340 0.31 -0.4 3,287,984 + DDA3937_RS14340 0.32 +1.1 3,288,004 - DDA3937_RS14340 0.34 +1.9
Or see this region's nucleotide sequence