Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13455

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,067,918	+		DDA3937_RS13445	0.88	+2.4
3,067,935	-				+3.3
3,068,048	+				+2.3
3,068,048	+				+0.6
3,068,048	+				+1.2
3,068,048	+				+2.8
3,068,048	+				+2.8
3,068,048	+				+3.0
3,068,048	+				+3.7
3,068,048	+				+0.6
3,068,049	-				+0.5
3,068,049	-				+2.2
3,068,049	-				+2.1
3,068,049	-				+2.6
3,068,049	-				-0.2
3,068,049	-				+2.8
3,068,049	-				+2.7
3,068,049	-				+1.8
3,068,049	-				+2.0
3,068,049	-				+3.9
3,068,049	-				+2.8
3,068,049	-				+4.0
3,068,049	-				+1.8
3,068,063	+				+2.4
3,068,079	+				+3.5
3,068,126	+				+3.5
3,068,127	-				+2.7
3,068,127	-				+3.4
3,068,127	-				+2.0
3,068,141	+		DDA3937_RS13450	0.11	+0.2
3,068,141	+		DDA3937_RS13450	0.11	+1.8
3,068,141	+		DDA3937_RS13450	0.11	+2.2
3,068,142	-		DDA3937_RS13450	0.11	+0.8
3,068,142	-		DDA3937_RS13450	0.11	+4.7
3,068,142	-		DDA3937_RS13450	0.11	+2.4
3,068,142	-		DDA3937_RS13450	0.11	+2.1
3,068,142	-		DDA3937_RS13450	0.11	+5.0
3,068,148	+		DDA3937_RS13450	0.12	+0.9
3,068,196	+		DDA3937_RS13450	0.19	+4.1
3,068,196	+		DDA3937_RS13450	0.19	+2.1
3,068,196	+		DDA3937_RS13450	0.19	+4.0
3,068,196	+		DDA3937_RS13450	0.19	+2.9
3,068,196	+		DDA3937_RS13450	0.19	+3.2
3,068,197	-		DDA3937_RS13450	0.19	+4.7
3,068,197	-		DDA3937_RS13450	0.19	+3.8
3,068,197	-		DDA3937_RS13450	0.19	+3.1
3,068,229	+		DDA3937_RS13450	0.23	+3.1
3,068,247	+		DDA3937_RS13450	0.26	+2.9
3,068,248	-		DDA3937_RS13450	0.26	+7.1
3,068,338	-				+2.2
3,068,338	-		DDA3937_RS13450	0.38	+3.4
3,068,338	-				+1.6
3,068,539	+		DDA3937_RS13450	0.67	+0.3
3,068,540	-		DDA3937_RS13450	0.67	+1.1
3,068,582	+		DDA3937_RS13450	0.73	+3.3
3,068,582	+		DDA3937_RS13450	0.73	+2.6
3,068,582	+		DDA3937_RS13450	0.73	+3.7
3,068,582	+		DDA3937_RS13450	0.73	+5.2
3,068,582	+		DDA3937_RS13450	0.73	+4.4
3,068,582	+		DDA3937_RS13450	0.73	+1.4
3,068,582	+		DDA3937_RS13450	0.73	+2.5
3,068,582	+		DDA3937_RS13450	0.73	+3.0
3,068,582	+		DDA3937_RS13450	0.73	+4.7
3,068,583	-		DDA3937_RS13450	0.73	+1.6
3,068,583	-		DDA3937_RS13450	0.73	+3.4
3,068,583	-				+6.0
3,068,583	-		DDA3937_RS13450	0.73	+3.7
3,068,626	-		DDA3937_RS13450	0.79	+3.1
3,068,633	-		DDA3937_RS13450	0.80	+3.7
3,068,686	+		DDA3937_RS13450	0.87	+0.7
3,068,686	+		DDA3937_RS13450	0.87	+2.7
3,068,686	+		DDA3937_RS13450	0.87	+0.3
3,068,686	+		DDA3937_RS13450	0.87	+3.0
3,068,686	+		DDA3937_RS13450	0.87	+4.1
3,068,686	+		DDA3937_RS13450	0.87	+3.1
3,068,686	+		DDA3937_RS13450	0.87	+2.3
3,068,686	+		DDA3937_RS13450	0.87	+3.2
3,068,686	+		DDA3937_RS13450	0.87	+2.5
3,068,686	+		DDA3937_RS13450	0.87	+2.8
3,068,686	+		DDA3937_RS13450	0.87	+3.1
3,068,687	-		DDA3937_RS13450	0.87	+1.8
3,068,687	-		DDA3937_RS13450	0.87	+3.8
3,068,687	-		DDA3937_RS13450	0.87	+3.0
3,068,687	-		DDA3937_RS13450	0.87	+2.2
3,068,687	-		DDA3937_RS13450	0.87	+4.2
3,068,687	-		DDA3937_RS13450	0.87	+2.4
3,068,687	-		DDA3937_RS13450	0.87	+0.8
3,068,687	-		DDA3937_RS13450	0.87	+2.3
3,068,688	+		DDA3937_RS13450	0.87	+2.5
3,068,688	+		DDA3937_RS13450	0.87	+2.8
3,068,688	+		DDA3937_RS13450	0.87	-1.0
3,068,689	-		DDA3937_RS13450	0.87	+3.2
3,068,689	-		DDA3937_RS13450	0.87	+2.4
3,068,689	-		DDA3937_RS13450	0.87	+2.3
3,068,689	-		DDA3937_RS13450	0.87	+5.1
3,068,689	-		DDA3937_RS13450	0.87	+3.7
3,068,689	-		DDA3937_RS13450	0.87	+4.8
3,068,689	-		DDA3937_RS13450	0.87	+5.7
3,068,689	-		DDA3937_RS13450	0.87	+3.2
3,068,689	-		DDA3937_RS13450	0.87	+2.7
3,068,690	+		DDA3937_RS13450	0.88	+6.4
3,068,691	-		DDA3937_RS13450	0.88	+4.5
3,068,691	-		DDA3937_RS13450	0.88	+2.4
3,068,691	-		DDA3937_RS13450	0.88	-0.1
3,068,691	-		DDA3937_RS13450	0.88	+3.6
3,068,710	+				+3.6
3,068,711	-				+2.5
3,068,723	+				+5.1
3,068,723	+				+1.7
3,068,724	-				+2.3
3,068,813	+				+2.9
3,068,813	+				-1.9
3,068,814	-				+0.9
3,068,821	+				+1.1
3,068,821	+				+1.8
3,068,821	+				+3.8
3,068,821	+				+2.9
3,068,822	-				+0.1
3,068,822	-				-1.4
3,068,885	+				+1.1
3,068,885	+				+2.1
3,068,885	+				-1.9
3,068,885	+				+2.3
3,068,885	+				+2.9
3,068,886	-				+0.6
3,068,889	+				+3.1
3,068,890	-				-0.5
3,068,890	-				+0.1
3,068,890	-				+0.1
3,069,051	+		DDA3937_RS13455	0.18	+2.5
3,069,121	-		DDA3937_RS13455	0.27	+1.7
3,069,166	+		DDA3937_RS13455	0.32	+1.3
3,069,166	+		DDA3937_RS13455	0.32	+0.7
3,069,166	+		DDA3937_RS13455	0.32	+1.2
3,069,167	-		DDA3937_RS13455	0.33	+2.5
3,069,167	-		DDA3937_RS13455	0.33	+0.6
3,069,167	-		DDA3937_RS13455	0.33	+2.6
3,069,167	-		DDA3937_RS13455	0.33	+2.9
3,069,175	+		DDA3937_RS13455	0.34	+3.2
3,069,218	+		DDA3937_RS13455	0.39	+3.2
3,069,218	+		DDA3937_RS13455	0.39	+3.6
3,069,219	-		DDA3937_RS13455	0.39	+3.9
3,069,354	+		DDA3937_RS13455	0.56	+3.1
3,069,354	+		DDA3937_RS13455	0.56	+3.0
3,069,355	-		DDA3937_RS13455	0.57	+1.4
3,069,355	-		DDA3937_RS13455	0.57	+1.9
3,069,355	-		DDA3937_RS13455	0.57	+4.5
3,069,355	-		DDA3937_RS13455	0.57	+4.5
3,069,355	-		DDA3937_RS13455	0.57	+4.5
3,069,451	+		DDA3937_RS13455	0.69	+4.6
3,069,558	+		DDA3937_RS13455	0.83	+8.9
3,069,558	+		DDA3937_RS13455	0.83	+2.0
3,069,558	+		DDA3937_RS13455	0.83	+3.0
3,069,558	+		DDA3937_RS13455	0.83	+2.3
3,069,558	+		DDA3937_RS13455	0.83	+1.8
3,069,558	+		DDA3937_RS13455	0.83	+2.8
3,069,559	-		DDA3937_RS13455	0.83	-1.6
3,069,559	-		DDA3937_RS13455	0.83	+3.6
3,069,575	+		DDA3937_RS13455	0.85	+3.6
3,069,575	+		DDA3937_RS13455	0.85	+4.6
3,069,576	-		DDA3937_RS13455	0.85	+2.3
3,069,629	+				+4.3
3,069,630	-				+1.9
3,069,630	-				+3.7
3,069,631	+				+3.7
3,069,631	+				+3.4
3,069,631	+				+2.0
3,069,631	+				+5.0
3,069,631	+				+2.7
3,069,631	+				+2.7
3,069,631	+				+6.1
3,069,631	+				+2.4
3,069,632	-				+3.5
3,069,632	-				+2.0
3,069,632	-				+1.3
3,069,632	-				+2.5
3,069,632	-				+3.6
3,069,640	+				+1.5
3,069,640	+				+1.2
3,069,640	+				+3.2
3,069,641	-				+2.7
3,069,641	-				+2.6
3,069,643	+				+4.4
3,069,643	+				+2.9
3,069,643	+				+5.5
3,069,643	+				+4.8
3,069,643	+				+1.3
3,069,644	-				+3.2
3,069,644	-				+2.5
3,069,644	-				+1.0
3,069,644	-				+2.9
3,069,644	-				-0.3
3,069,680	+				+5.1
3,069,681	-				+3.6
3,069,722	+				+2.1
3,069,722	+				+3.5
3,069,722	+				+1.0
3,069,722	+				-0.3
3,069,723	-				+1.8
3,069,723	-				+3.1
3,069,723	-				+0.9
3,069,723	-				+0.3
3,069,736	+				+2.6
3,069,736	+				+2.5
3,069,756	+				+3.5
3,069,757	-				+2.3
3,069,840	+		DDA3937_RS13460	0.16	+2.2
3,069,840	+		DDA3937_RS13460	0.16	+2.4
3,069,840	+		DDA3937_RS13460	0.16	+4.3
3,069,841	-		DDA3937_RS13460	0.16	+4.3
3,069,841	-		DDA3937_RS13460	0.16	+3.1
3,069,862	+		DDA3937_RS13460	0.19	+3.7
3,069,898	+		DDA3937_RS13460	0.23	+2.8
3,069,898	+		DDA3937_RS13460	0.23	-1.1
3,070,069	-		DDA3937_RS13460	0.46	+2.2
3,070,071	+		DDA3937_RS13460	0.46	+3.1
3,070,071	+		DDA3937_RS13460	0.46	+2.8
3,070,071	+		DDA3937_RS13460	0.46	+2.7
3,070,072	-		DDA3937_RS13460	0.46	+1.9
3,070,072	-		DDA3937_RS13460	0.46	+2.3
3,070,072	-		DDA3937_RS13460	0.46	+2.1
3,070,072	-		DDA3937_RS13460	0.46	+6.5
3,070,072	-		DDA3937_RS13460	0.46	+3.1
3,070,156	-		DDA3937_RS13460	0.58	+3.5
3,070,167	+		DDA3937_RS13460	0.59	+3.2
3,070,168	-		DDA3937_RS13460	0.59	+2.3
3,070,179	+		DDA3937_RS13460	0.61	+3.3
3,070,180	-		DDA3937_RS13460	0.61	+2.5
3,070,180	-		DDA3937_RS13460	0.61	+1.8
3,070,181	+		DDA3937_RS13460	0.61	+2.0
3,070,181	+		DDA3937_RS13460	0.61	+3.7
3,070,181	+		DDA3937_RS13460	0.61	+2.6
3,070,182	-		DDA3937_RS13460	0.61	+2.8
3,070,182	-		DDA3937_RS13460	0.61	+0.7
3,070,182	-		DDA3937_RS13460	0.61	+3.8
3,070,182	-		DDA3937_RS13460	0.61	+2.9
3,070,182	-		DDA3937_RS13460	0.61	+3.2
3,070,182	-		DDA3937_RS13460	0.61	+2.0
3,070,182	-		DDA3937_RS13460	0.61	+2.9
3,070,260	-		DDA3937_RS13460	0.71	+0.4
3,070,260	-		DDA3937_RS13460	0.71	+2.0
3,070,260	-		DDA3937_RS13460	0.71	+3.2
3,070,303	+		DDA3937_RS13460	0.77	+4.2
3,070,304	-		DDA3937_RS13460	0.77	+4.2
3,070,304	-		DDA3937_RS13460	0.77	+1.9
3,070,304	-		DDA3937_RS13460	0.77	+2.9
3,070,304	-		DDA3937_RS13460	0.77	+4.4
3,070,304	-		DDA3937_RS13460	0.77	+3.5
3,070,315	-		DDA3937_RS13460	0.79	+4.3
3,070,315	-		DDA3937_RS13460	0.79	+3.5
3,070,315	-		DDA3937_RS13460	0.79	+4.0
3,070,405	-				+2.3
3,070,405	-				+3.9
3,070,405	-				+2.1
3,070,405	-				+5.0
3,070,460	+				+3.4
3,070,460	+				+2.8
3,070,460	+				+2.9
3,070,460	+				+3.7
3,070,460	+				+1.2
3,070,461	-				+2.9
3,070,461	-				+3.1
3,070,461	-				+2.7
3,070,461	-				+3.1
3,070,461	-				+1.9
3,070,461	-				+3.9
3,070,464	+				+2.9
3,070,495	+				+4.8
3,070,495	+				+1.4
3,070,496	-				+0.5
3,070,566	-				+3.0
3,070,566	-				+5.6
3,070,566	-				+5.1
3,070,570	-				+2.7
3,070,602	+				+2.9
3,070,609	-				+3.5
3,070,617	+				+1.3