Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13040

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,977,411	+				+0.1
2,977,411	+				-0.4
2,977,412	-				-1.2
2,977,412	-				-0.3
2,977,412	-				-1.1
2,977,412	-				-1.1
2,977,412	-				+0.8
2,977,413	+				+1.4
2,977,413	+				+0.1
2,977,413	+				-0.1
2,977,413	+				+0.5
2,977,414	-				-1.2
2,977,414	-				-0.6
2,977,503	+				+1.7
2,977,503	+				-0.0
2,977,504	-				+0.6
2,977,520	-				-1.1
2,977,605	+		DDA3937_RS13035	0.19	+0.1
2,977,606	-		DDA3937_RS13035	0.19	-0.7
2,977,606	-		DDA3937_RS13035	0.19	-1.0
2,977,617	+		DDA3937_RS13035	0.21	-0.2
2,977,644	+		DDA3937_RS13035	0.26	-0.9
2,977,645	-		DDA3937_RS13035	0.26	+0.4
2,977,645	-		DDA3937_RS13035	0.26	+0.2
2,977,681	+		DDA3937_RS13035	0.33	-0.4
2,977,682	-		DDA3937_RS13035	0.33	+1.2
2,977,682	-		DDA3937_RS13035	0.33	-1.6
2,977,682	-		DDA3937_RS13035	0.33	-0.8
2,977,877	-		DDA3937_RS13035	0.69	-1.2
2,977,877	-		DDA3937_RS13035	0.69	+0.4
2,977,915	+		DDA3937_RS13035	0.76	+1.6
2,977,916	-		DDA3937_RS13035	0.77	-0.2
2,977,916	-				-1.4
2,977,916	-		DDA3937_RS13035	0.77	-0.8
2,977,986	-		DDA3937_RS13035	0.90	-0.9
2,977,986	-		DDA3937_RS13035	0.90	-2.6
2,978,011	+				+1.1
2,978,011	+				+2.2
2,978,012	-				+0.8
2,978,012	-				-1.3
2,978,012	-				-1.0
2,978,012	-				-2.8
2,978,015	+				+0.7
2,978,016	-				-0.2
2,978,016	-				-3.4
2,978,016	-				+1.0
2,978,016	-				-0.5
2,978,016	-				-0.6
2,978,016	-				+0.1
2,978,025	-				-0.3
2,978,058	-				+1.1
2,978,062	-				-1.4
2,978,089	-				-2.2
2,978,091	+				+0.5
2,978,091	+				+0.4
2,978,165	+				-0.6
2,978,193	+				-0.2
2,978,206	-				-0.4
2,978,206	-				-1.7
2,978,276	-				-2.3
2,978,276	-				-0.9
2,978,281	+				-0.3
2,978,291	+				+0.4
2,978,294	+				-0.3
2,978,295	-				-0.4
2,978,295	-				-0.4
2,978,305	-				+0.7
2,978,317	-				-0.0
2,978,324	-				-1.5
2,978,325	+				-2.2
2,978,325	+				-1.9
2,978,326	-				-2.6
2,978,326	-				-1.9
2,978,336	+				-0.5
2,978,336	+				+0.1
2,978,336	+				-0.6
2,978,337	-				+0.5
2,978,337	-				-0.1
2,978,337	-				-0.2
2,978,337	-				-0.9
2,978,405	+				-0.2
2,978,405	+				-3.2
2,978,405	+				+0.9
2,978,406	-				+0.6
2,978,406	-				-0.3
2,978,477	+				-2.2
2,978,477	+				-1.2
2,978,477	+				-2.6
2,978,477	+				+0.1
2,978,477	+				-0.6
2,978,478	-				-0.6
2,978,508	-				-1.0
2,978,508	-				+0.4
2,978,633	+		DDA3937_RS13040	0.18	-3.5
2,978,639	+		DDA3937_RS13040	0.18	-2.4
2,978,639	+		DDA3937_RS13040	0.18	-1.2
2,978,639	+		DDA3937_RS13040	0.18	-2.4
2,978,639	+		DDA3937_RS13040	0.18	+0.1
2,978,639	+		DDA3937_RS13040	0.18	-0.6
2,978,639	+		DDA3937_RS13040	0.18	-0.8
2,978,640	-		DDA3937_RS13040	0.18	-0.7
2,978,640	-		DDA3937_RS13040	0.18	-0.4
2,978,640	-				-0.6
2,978,680	-		DDA3937_RS13040	0.21	-1.5
2,979,051	+				+0.4
2,979,052	-		DDA3937_RS13040	0.50	-1.1
2,979,113	+		DDA3937_RS13040	0.54	-1.3
2,979,113	+		DDA3937_RS13040	0.54	-1.8
2,979,114	-		DDA3937_RS13040	0.54	-1.5
2,979,114	-		DDA3937_RS13040	0.54	-2.2
2,979,318	+		DDA3937_RS13040	0.70	+0.1
2,979,365	+		DDA3937_RS13040	0.73	-1.9
2,979,506	+		DDA3937_RS13040	0.84	-1.9
2,979,507	-		DDA3937_RS13040	0.84	-1.4
2,979,601	+				-0.4
2,979,602	-				-0.2
2,979,602	-				-1.5
2,979,618	+				-0.6
2,979,618	+				+0.8
2,979,618	+				-1.6
2,979,630	+				-1.7
2,979,631	-				-1.9
2,979,741	-				-1.4
2,979,744	+				-1.5
2,979,744	+				-1.9
2,979,744	+				-1.9
2,979,745	-				-0.6
2,979,766	-				-0.4
2,979,805	+				-0.4
2,979,806	-				-0.2
2,979,806	-				+1.7
2,979,807	+				+0.4
2,979,807	+				+0.3
2,979,808	-				-1.6
2,979,827	+				+0.1
2,979,827	+				+0.1
2,979,827	+				-0.6
2,979,828	-				-1.8
2,979,828	-				-0.6
2,979,828	-				-0.4
2,979,828	-				+1.8
2,979,828	-				-0.9
2,979,828	-				+1.2
2,979,828	-				+0.1
2,979,828	-				+0.7
2,979,828	-				+0.4
2,979,828	-				-0.2
2,979,828	-				-0.9
2,979,857	+				-1.8
2,979,867	+				-0.2
2,979,895	+				-0.6
2,979,899	+				-0.6
2,979,900	-				+0.3
2,979,993	-				-0.5
2,979,994	+				-1.8
2,979,994	+				+0.3
2,979,995	-				+0.1
2,980,001	+				+1.1
2,980,002	-				+1.4
2,980,002	-				-0.2
2,980,002	-				+0.1
2,980,002	-				+0.7
2,980,004	-				+0.9
2,980,008	-				+0.4
2,980,067	+				-0.8
2,980,069	+				-0.2
2,980,070	-				-0.1
2,980,127	+				+0.4
2,980,140	-		DDA3937_RS13045	0.11	+0.4
2,980,172	-		DDA3937_RS13045	0.17	-0.4
2,980,172	-				-1.6
2,980,174	+		DDA3937_RS13045	0.17	-0.1
2,980,175	-		DDA3937_RS13045	0.17	-3.1
2,980,175	-		DDA3937_RS13045	0.17	-0.6
2,980,236	+		DDA3937_RS13045	0.29	+0.2
2,980,236	+		DDA3937_RS13045	0.29	+0.2
2,980,236	+		DDA3937_RS13045	0.29	-1.2
2,980,236	+		DDA3937_RS13045	0.29	-1.2
2,980,236	+		DDA3937_RS13045	0.29	-0.0
2,980,236	+		DDA3937_RS13045	0.29	-0.7
2,980,236	+		DDA3937_RS13045	0.29	-1.1
2,980,237	-		DDA3937_RS13045	0.29	-0.2
2,980,237	-		DDA3937_RS13045	0.29	+1.6
2,980,237	-		DDA3937_RS13045	0.29	-0.7
2,980,237	-		DDA3937_RS13045	0.29	-0.6
2,980,237	-		DDA3937_RS13045	0.29	+0.9
2,980,237	-		DDA3937_RS13045	0.29	+0.6
2,980,241	+		DDA3937_RS13045	0.30	+0.8
2,980,241	+		DDA3937_RS13045	0.30	-1.4
2,980,242	-		DDA3937_RS13045	0.30	+2.5
2,980,242	-		DDA3937_RS13045	0.30	+1.9
2,980,242	-		DDA3937_RS13045	0.30	+0.2
2,980,242	-		DDA3937_RS13045	0.30	-0.8
2,980,242	-		DDA3937_RS13045	0.30	-0.4
2,980,276	-		DDA3937_RS13045	0.36	-1.5
2,980,300	+		DDA3937_RS13045	0.41	+0.7
2,980,301	-		DDA3937_RS13045	0.41	-1.8
2,980,301	-		DDA3937_RS13045	0.41	+0.1
2,980,301	-		DDA3937_RS13045	0.41	+1.2
2,980,331	+		DDA3937_RS13045	0.46	-1.2
2,980,376	+		DDA3937_RS13045	0.55	-0.5
2,980,520	+		DDA3937_RS13045	0.81	+0.3
2,980,520	+		DDA3937_RS13045	0.81	+0.5
2,980,520	+		DDA3937_RS13045	0.81	+1.2
2,980,520	+		DDA3937_RS13045	0.81	-0.8
2,980,520	+		DDA3937_RS13045	0.81	-1.0
2,980,521	-		DDA3937_RS13045	0.81	+0.9
2,980,521	-		DDA3937_RS13045	0.81	-2.4
2,980,521	-		DDA3937_RS13045	0.81	-0.5
2,980,521	-		DDA3937_RS13045	0.81	-0.2
2,980,521	-		DDA3937_RS13045	0.81	+0.4
2,980,522	+		DDA3937_RS13045	0.81	-0.1
2,980,522	+		DDA3937_RS13045	0.81	+0.8
2,980,522	+		DDA3937_RS13045	0.81	+0.4
2,980,522	+		DDA3937_RS13045	0.81	-1.6
2,980,522	+		DDA3937_RS13045	0.81	-0.7
2,980,522	+		DDA3937_RS13045	0.81	-0.8
2,980,522	+		DDA3937_RS13045	0.81	-0.5
2,980,523	-		DDA3937_RS13045	0.82	-2.8
2,980,523	-		DDA3937_RS13045	0.82	+1.0
2,980,523	-		DDA3937_RS13045	0.82	+0.6
2,980,523	-		DDA3937_RS13045	0.82	-0.0
2,980,523	-		DDA3937_RS13045	0.82	-0.4
2,980,523	-		DDA3937_RS13045	0.82	-1.5
2,980,523	-		DDA3937_RS13045	0.82	-0.9
2,980,523	-		DDA3937_RS13045	0.82	-0.9
2,980,523	-		DDA3937_RS13045	0.82	+1.5
2,980,523	-		DDA3937_RS13045	0.82	+1.0
2,980,612	+				+0.0
2,980,613	-				+0.7
2,980,613	-				-1.2
2,980,647	+				+0.4
2,980,647	+				-1.6
2,980,648	-				-1.2
2,980,648	-				-0.6
2,980,659	+				-1.6