Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS12385 and DDA3937_RS12390 are separated by 261 nucleotides DDA3937_RS12390 and DDA3937_RS12395 are separated by 118 nucleotides
DDA3937_RS12385: DDA3937_RS12385 - LysR family transcriptional regulator, at 2,818,297 to 2,819,190
_RS12385
DDA3937_RS12390: DDA3937_RS12390 - transcriptional regulator TyrR, at 2,819,452 to 2,821,017
_RS12390
DDA3937_RS12395: DDA3937_RS12395 - M20/M25/M40 family metallo-hydrolase, at 2,821,136 to 2,822,695
_RS12395
Position (kb)
2819
2820
2821
2822 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2818.583 kb on + strand, within DDA3937_RS12385 at 2818.584 kb on - strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.617 kb on + strand, within DDA3937_RS12385 at 2818.618 kb on - strand, within DDA3937_RS12385 at 2818.618 kb on - strand, within DDA3937_RS12385 at 2818.618 kb on - strand, within DDA3937_RS12385 at 2818.618 kb on - strand, within DDA3937_RS12385 at 2818.618 kb on - strand, within DDA3937_RS12385 at 2818.619 kb on + strand, within DDA3937_RS12385 at 2818.619 kb on + strand, within DDA3937_RS12385 at 2818.619 kb on + strand, within DDA3937_RS12385 at 2818.619 kb on + strand, within DDA3937_RS12385 at 2818.619 kb on + strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.620 kb on - strand, within DDA3937_RS12385 at 2818.706 kb on + strand, within DDA3937_RS12385 at 2818.817 kb on - strand, within DDA3937_RS12385 at 2818.919 kb on + strand, within DDA3937_RS12385 at 2818.919 kb on + strand, within DDA3937_RS12385 at 2818.941 kb on - strand, within DDA3937_RS12385 at 2818.941 kb on - strand, within DDA3937_RS12385 at 2818.941 kb on - strand, within DDA3937_RS12385 at 2818.970 kb on + strand, within DDA3937_RS12385 at 2818.971 kb on - strand, within DDA3937_RS12385 at 2818.974 kb on + strand, within DDA3937_RS12385 at 2818.975 kb on - strand, within DDA3937_RS12385 at 2819.026 kb on - strand, within DDA3937_RS12385 at 2819.026 kb on - strand, within DDA3937_RS12385 at 2819.053 kb on - strand, within DDA3937_RS12385 at 2819.053 kb on - strand, within DDA3937_RS12385 at 2819.053 kb on - strand, within DDA3937_RS12385 at 2819.053 kb on - strand, within DDA3937_RS12385 at 2819.070 kb on + strand, within DDA3937_RS12385 at 2819.091 kb on + strand, within DDA3937_RS12385 at 2819.091 kb on + strand, within DDA3937_RS12385 at 2819.091 kb on + strand, within DDA3937_RS12385 at 2819.092 kb on - strand, within DDA3937_RS12385 at 2819.119 kb on + strand at 2819.119 kb on + strand at 2819.122 kb on + strand at 2819.159 kb on + strand at 2819.189 kb on - strand at 2819.382 kb on + strand at 2819.382 kb on + strand at 2819.382 kb on + strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.383 kb on - strand at 2819.389 kb on - strand at 2819.506 kb on - strand at 2819.565 kb on - strand at 2819.565 kb on - strand at 2819.573 kb on + strand at 2819.729 kb on + strand, within DDA3937_RS12390 at 2819.771 kb on + strand, within DDA3937_RS12390 at 2819.787 kb on + strand, within DDA3937_RS12390 at 2819.930 kb on + strand, within DDA3937_RS12390 at 2819.931 kb on - strand, within DDA3937_RS12390 at 2819.931 kb on - strand, within DDA3937_RS12390 at 2820.194 kb on + strand at 2820.194 kb on + strand, within DDA3937_RS12390 at 2820.331 kb on + strand, within DDA3937_RS12390 at 2820.405 kb on + strand, within DDA3937_RS12390 at 2820.406 kb on - strand, within DDA3937_RS12390 at 2820.463 kb on + strand, within DDA3937_RS12390 at 2820.464 kb on - strand, within DDA3937_RS12390 at 2820.572 kb on - strand, within DDA3937_RS12390 at 2820.623 kb on + strand, within DDA3937_RS12390 at 2820.624 kb on - strand, within DDA3937_RS12390 at 2820.802 kb on - strand, within DDA3937_RS12390 at 2820.802 kb on - strand, within DDA3937_RS12390 at 2820.802 kb on - strand, within DDA3937_RS12390 at 2820.888 kb on + strand at 2820.943 kb on - strand at 2821.003 kb on + strand at 2821.003 kb on + strand at 2821.021 kb on + strand at 2821.066 kb on - strand at 2821.066 kb on - strand at 2821.137 kb on + strand at 2821.137 kb on + strand at 2821.138 kb on - strand at 2821.206 kb on + strand at 2821.206 kb on + strand at 2821.207 kb on - strand at 2821.207 kb on - strand at 2821.239 kb on + strand at 2821.239 kb on + strand at 2821.246 kb on + strand at 2821.246 kb on + strand at 2821.246 kb on + strand at 2821.247 kb on - strand at 2821.247 kb on - strand at 2821.247 kb on - strand at 2821.247 kb on - strand at 2821.247 kb on - strand at 2821.310 kb on - strand, within DDA3937_RS12395 at 2821.310 kb on - strand, within DDA3937_RS12395 at 2821.480 kb on + strand, within DDA3937_RS12395 at 2821.480 kb on + strand, within DDA3937_RS12395 at 2821.481 kb on - strand at 2821.519 kb on - strand, within DDA3937_RS12395 at 2821.519 kb on - strand, within DDA3937_RS12395 at 2821.535 kb on + strand, within DDA3937_RS12395 at 2821.540 kb on - strand, within DDA3937_RS12395 at 2821.557 kb on + strand, within DDA3937_RS12395 at 2821.557 kb on + strand, within DDA3937_RS12395 at 2821.557 kb on + strand, within DDA3937_RS12395 at 2821.558 kb on - strand, within DDA3937_RS12395 at 2821.558 kb on - strand, within DDA3937_RS12395 at 2821.558 kb on - strand, within DDA3937_RS12395 at 2821.558 kb on - strand, within DDA3937_RS12395 at 2821.558 kb on - strand, within DDA3937_RS12395 at 2821.563 kb on + strand, within DDA3937_RS12395 at 2821.563 kb on + strand, within DDA3937_RS12395 at 2821.564 kb on - strand, within DDA3937_RS12395 at 2821.588 kb on + strand, within DDA3937_RS12395 at 2821.595 kb on - strand, within DDA3937_RS12395 at 2821.597 kb on + strand, within DDA3937_RS12395 at 2821.597 kb on + strand, within DDA3937_RS12395 at 2821.597 kb on + strand, within DDA3937_RS12395 at 2821.597 kb on + strand at 2821.597 kb on + strand, within DDA3937_RS12395 at 2821.597 kb on + strand at 2821.597 kb on + strand, within DDA3937_RS12395 at 2821.598 kb on - strand, within DDA3937_RS12395 at 2821.598 kb on - strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.629 kb on + strand, within DDA3937_RS12395 at 2821.630 kb on - strand, within DDA3937_RS12395 at 2821.630 kb on - strand, within DDA3937_RS12395 at 2821.630 kb on - strand, within DDA3937_RS12395 at 2821.630 kb on - strand, within DDA3937_RS12395 at 2821.821 kb on + strand, within DDA3937_RS12395 at 2821.822 kb on - strand, within DDA3937_RS12395 at 2822.002 kb on + strand, within DDA3937_RS12395 at 2822.002 kb on + strand, within DDA3937_RS12395 at 2822.002 kb on + strand, within DDA3937_RS12395 at 2822.002 kb on + strand, within DDA3937_RS12395 at 2822.003 kb on - strand, within DDA3937_RS12395 at 2822.005 kb on + strand, within DDA3937_RS12395 at 2822.006 kb on - strand, within DDA3937_RS12395
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,818,583 + DDA3937_RS12385 0.32 -0.0 2,818,584 - DDA3937_RS12385 0.32 -0.2 2,818,617 + DDA3937_RS12385 0.36 -0.3 2,818,617 + DDA3937_RS12385 0.36 +0.1 2,818,617 + DDA3937_RS12385 0.36 -0.6 2,818,617 + DDA3937_RS12385 0.36 -0.9 2,818,617 + DDA3937_RS12385 0.36 -0.6 2,818,617 + DDA3937_RS12385 0.36 +0.4 2,818,618 - DDA3937_RS12385 0.36 +0.4 2,818,618 - DDA3937_RS12385 0.36 +0.8 2,818,618 - DDA3937_RS12385 0.36 +1.2 2,818,618 - DDA3937_RS12385 0.36 -0.3 2,818,618 - DDA3937_RS12385 0.36 -1.2 2,818,619 + DDA3937_RS12385 0.36 +0.5 2,818,619 + DDA3937_RS12385 0.36 -0.4 2,818,619 + DDA3937_RS12385 0.36 -1.1 2,818,619 + DDA3937_RS12385 0.36 +0.5 2,818,619 + DDA3937_RS12385 0.36 -1.6 2,818,620 - DDA3937_RS12385 0.36 -0.8 2,818,620 - DDA3937_RS12385 0.36 +1.2 2,818,620 - DDA3937_RS12385 0.36 -0.1 2,818,620 - DDA3937_RS12385 0.36 +0.2 2,818,620 - DDA3937_RS12385 0.36 +1.1 2,818,620 - DDA3937_RS12385 0.36 +0.2 2,818,620 - DDA3937_RS12385 0.36 -0.8 2,818,620 - DDA3937_RS12385 0.36 +0.5 2,818,706 + DDA3937_RS12385 0.46 +1.4 2,818,817 - DDA3937_RS12385 0.58 +1.1 2,818,919 + DDA3937_RS12385 0.70 -1.4 2,818,919 + DDA3937_RS12385 0.70 -2.2 2,818,941 - DDA3937_RS12385 0.72 +0.6 2,818,941 - DDA3937_RS12385 0.72 -1.3 2,818,941 - DDA3937_RS12385 0.72 +0.3 2,818,970 + DDA3937_RS12385 0.75 +1.4 2,818,971 - DDA3937_RS12385 0.75 -1.4 2,818,974 + DDA3937_RS12385 0.76 -0.3 2,818,975 - DDA3937_RS12385 0.76 -0.4 2,819,026 - DDA3937_RS12385 0.82 +1.1 2,819,026 - DDA3937_RS12385 0.82 +2.5 2,819,053 - DDA3937_RS12385 0.85 -1.2 2,819,053 - DDA3937_RS12385 0.85 -0.1 2,819,053 - DDA3937_RS12385 0.85 -0.0 2,819,053 - DDA3937_RS12385 0.85 -1.1 2,819,070 + DDA3937_RS12385 0.86 -1.1 2,819,091 + DDA3937_RS12385 0.89 -0.8 2,819,091 + DDA3937_RS12385 0.89 -1.3 2,819,091 + DDA3937_RS12385 0.89 -2.2 2,819,092 - DDA3937_RS12385 0.89 -0.6 2,819,119 + -1.2 2,819,119 + -0.6 2,819,122 + -2.2 2,819,159 + -1.2 2,819,189 - -0.8 2,819,382 + -1.9 2,819,382 + -1.2 2,819,382 + +1.2 2,819,383 - +0.4 2,819,383 - -2.2 2,819,383 - +0.4 2,819,383 - -0.3 2,819,383 - -0.0 2,819,383 - +1.0 2,819,383 - -0.2 2,819,389 - -1.2 2,819,506 - -1.6 2,819,565 - -0.6 2,819,565 - -0.6 2,819,573 + -0.2 2,819,729 + DDA3937_RS12390 0.18 -1.9 2,819,771 + DDA3937_RS12390 0.20 -0.5 2,819,787 + DDA3937_RS12390 0.21 -0.9 2,819,930 + DDA3937_RS12390 0.31 -2.2 2,819,931 - DDA3937_RS12390 0.31 -1.9 2,819,931 - DDA3937_RS12390 0.31 -2.4 2,820,194 + -0.6 2,820,194 + DDA3937_RS12390 0.47 -1.6 2,820,331 + DDA3937_RS12390 0.56 -2.2 2,820,405 + DDA3937_RS12390 0.61 -2.9 2,820,406 - DDA3937_RS12390 0.61 -2.9 2,820,463 + DDA3937_RS12390 0.65 -3.9 2,820,464 - DDA3937_RS12390 0.65 -0.6 2,820,572 - DDA3937_RS12390 0.72 +0.4 2,820,623 + DDA3937_RS12390 0.75 -0.6 2,820,624 - DDA3937_RS12390 0.75 -2.6 2,820,802 - DDA3937_RS12390 0.86 -1.5 2,820,802 - DDA3937_RS12390 0.86 -1.1 2,820,802 - DDA3937_RS12390 0.86 +0.4 2,820,888 + -2.8 2,820,943 - +1.4 2,821,003 + -0.8 2,821,003 + -0.4 2,821,021 + -1.2 2,821,066 - +0.6 2,821,066 - +0.2 2,821,137 + -0.6 2,821,137 + -0.8 2,821,138 - +1.0 2,821,206 + +0.4 2,821,206 + +2.0 2,821,207 - -1.4 2,821,207 - -0.4 2,821,239 + -0.3 2,821,239 + -2.4 2,821,246 + -2.4 2,821,246 + -1.8 2,821,246 + +0.4 2,821,247 - +2.2 2,821,247 - +0.1 2,821,247 - -1.9 2,821,247 - +0.0 2,821,247 - -0.3 2,821,310 - DDA3937_RS12395 0.11 +0.4 2,821,310 - DDA3937_RS12395 0.11 +0.1 2,821,480 + DDA3937_RS12395 0.22 -3.1 2,821,480 + DDA3937_RS12395 0.22 -0.1 2,821,481 - -1.6 2,821,519 - DDA3937_RS12395 0.25 -1.7 2,821,519 - DDA3937_RS12395 0.25 -1.0 2,821,535 + DDA3937_RS12395 0.26 -2.4 2,821,540 - DDA3937_RS12395 0.26 -0.4 2,821,557 + DDA3937_RS12395 0.27 -0.8 2,821,557 + DDA3937_RS12395 0.27 -2.4 2,821,557 + DDA3937_RS12395 0.27 -0.4 2,821,558 - DDA3937_RS12395 0.27 +1.0 2,821,558 - DDA3937_RS12395 0.27 -0.0 2,821,558 - DDA3937_RS12395 0.27 -1.9 2,821,558 - DDA3937_RS12395 0.27 +1.2 2,821,558 - DDA3937_RS12395 0.27 +2.3 2,821,563 + DDA3937_RS12395 0.27 -0.5 2,821,563 + DDA3937_RS12395 0.27 +1.2 2,821,564 - DDA3937_RS12395 0.27 -0.0 2,821,588 + DDA3937_RS12395 0.29 -0.8 2,821,595 - DDA3937_RS12395 0.29 -2.4 2,821,597 + DDA3937_RS12395 0.30 -0.0 2,821,597 + DDA3937_RS12395 0.30 -1.1 2,821,597 + DDA3937_RS12395 0.30 -1.2 2,821,597 + -0.2 2,821,597 + DDA3937_RS12395 0.30 -0.6 2,821,597 + -0.9 2,821,597 + DDA3937_RS12395 0.30 +0.2 2,821,598 - DDA3937_RS12395 0.30 -0.5 2,821,598 - DDA3937_RS12395 0.30 -1.2 2,821,629 + DDA3937_RS12395 0.32 -0.0 2,821,629 + DDA3937_RS12395 0.32 -0.9 2,821,629 + DDA3937_RS12395 0.32 -0.1 2,821,629 + DDA3937_RS12395 0.32 -0.6 2,821,629 + DDA3937_RS12395 0.32 +0.4 2,821,629 + DDA3937_RS12395 0.32 -2.1 2,821,630 - DDA3937_RS12395 0.32 -2.4 2,821,630 - DDA3937_RS12395 0.32 -0.3 2,821,630 - DDA3937_RS12395 0.32 +0.5 2,821,630 - DDA3937_RS12395 0.32 -0.2 2,821,821 + DDA3937_RS12395 0.44 -1.1 2,821,822 - DDA3937_RS12395 0.44 -1.3 2,822,002 + DDA3937_RS12395 0.56 -0.9 2,822,002 + DDA3937_RS12395 0.56 -0.6 2,822,002 + DDA3937_RS12395 0.56 -1.9 2,822,002 + DDA3937_RS12395 0.56 -0.2 2,822,003 - DDA3937_RS12395 0.56 -0.6 2,822,005 + DDA3937_RS12395 0.56 +0.4 2,822,006 - DDA3937_RS12395 0.56 -0.0
Or see this region's nucleotide sequence