Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12390

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS12385 and DDA3937_RS12390 are separated by 261 nucleotidesDDA3937_RS12390 and DDA3937_RS12395 are separated by 118 nucleotides DDA3937_RS12385: DDA3937_RS12385 - LysR family transcriptional regulator, at 2,818,297 to 2,819,190 _RS12385 DDA3937_RS12390: DDA3937_RS12390 - transcriptional regulator TyrR, at 2,819,452 to 2,821,017 _RS12390 DDA3937_RS12395: DDA3937_RS12395 - M20/M25/M40 family metallo-hydrolase, at 2,821,136 to 2,822,695 _RS12395 Position (kb) 2819 2820 2821 2822Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2818.583 kb on + strand, within DDA3937_RS12385at 2818.584 kb on - strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.617 kb on + strand, within DDA3937_RS12385at 2818.618 kb on - strand, within DDA3937_RS12385at 2818.618 kb on - strand, within DDA3937_RS12385at 2818.618 kb on - strand, within DDA3937_RS12385at 2818.618 kb on - strand, within DDA3937_RS12385at 2818.618 kb on - strand, within DDA3937_RS12385at 2818.619 kb on + strand, within DDA3937_RS12385at 2818.619 kb on + strand, within DDA3937_RS12385at 2818.619 kb on + strand, within DDA3937_RS12385at 2818.619 kb on + strand, within DDA3937_RS12385at 2818.619 kb on + strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.620 kb on - strand, within DDA3937_RS12385at 2818.706 kb on + strand, within DDA3937_RS12385at 2818.817 kb on - strand, within DDA3937_RS12385at 2818.919 kb on + strand, within DDA3937_RS12385at 2818.919 kb on + strand, within DDA3937_RS12385at 2818.941 kb on - strand, within DDA3937_RS12385at 2818.941 kb on - strand, within DDA3937_RS12385at 2818.941 kb on - strand, within DDA3937_RS12385at 2818.970 kb on + strand, within DDA3937_RS12385at 2818.971 kb on - strand, within DDA3937_RS12385at 2818.974 kb on + strand, within DDA3937_RS12385at 2818.975 kb on - strand, within DDA3937_RS12385at 2819.026 kb on - strand, within DDA3937_RS12385at 2819.026 kb on - strand, within DDA3937_RS12385at 2819.053 kb on - strand, within DDA3937_RS12385at 2819.053 kb on - strand, within DDA3937_RS12385at 2819.053 kb on - strand, within DDA3937_RS12385at 2819.053 kb on - strand, within DDA3937_RS12385at 2819.070 kb on + strand, within DDA3937_RS12385at 2819.091 kb on + strand, within DDA3937_RS12385at 2819.091 kb on + strand, within DDA3937_RS12385at 2819.091 kb on + strand, within DDA3937_RS12385at 2819.092 kb on - strand, within DDA3937_RS12385at 2819.119 kb on + strandat 2819.119 kb on + strandat 2819.122 kb on + strandat 2819.159 kb on + strandat 2819.189 kb on - strandat 2819.382 kb on + strandat 2819.382 kb on + strandat 2819.382 kb on + strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.383 kb on - strandat 2819.389 kb on - strandat 2819.506 kb on - strandat 2819.565 kb on - strandat 2819.565 kb on - strandat 2819.573 kb on + strandat 2819.729 kb on + strand, within DDA3937_RS12390at 2819.771 kb on + strand, within DDA3937_RS12390at 2819.787 kb on + strand, within DDA3937_RS12390at 2819.930 kb on + strand, within DDA3937_RS12390at 2819.931 kb on - strand, within DDA3937_RS12390at 2819.931 kb on - strand, within DDA3937_RS12390at 2820.194 kb on + strandat 2820.194 kb on + strand, within DDA3937_RS12390at 2820.331 kb on + strand, within DDA3937_RS12390at 2820.405 kb on + strand, within DDA3937_RS12390at 2820.406 kb on - strand, within DDA3937_RS12390at 2820.463 kb on + strand, within DDA3937_RS12390at 2820.464 kb on - strand, within DDA3937_RS12390at 2820.572 kb on - strand, within DDA3937_RS12390at 2820.623 kb on + strand, within DDA3937_RS12390at 2820.624 kb on - strand, within DDA3937_RS12390at 2820.802 kb on - strand, within DDA3937_RS12390at 2820.802 kb on - strand, within DDA3937_RS12390at 2820.802 kb on - strand, within DDA3937_RS12390at 2820.888 kb on + strandat 2820.943 kb on - strandat 2821.003 kb on + strandat 2821.003 kb on + strandat 2821.021 kb on + strandat 2821.066 kb on - strandat 2821.066 kb on - strandat 2821.137 kb on + strandat 2821.137 kb on + strandat 2821.138 kb on - strandat 2821.206 kb on + strandat 2821.206 kb on + strandat 2821.207 kb on - strandat 2821.207 kb on - strandat 2821.239 kb on + strandat 2821.239 kb on + strandat 2821.246 kb on + strandat 2821.246 kb on + strandat 2821.246 kb on + strandat 2821.247 kb on - strandat 2821.247 kb on - strandat 2821.247 kb on - strandat 2821.247 kb on - strandat 2821.247 kb on - strandat 2821.310 kb on - strand, within DDA3937_RS12395at 2821.310 kb on - strand, within DDA3937_RS12395at 2821.480 kb on + strand, within DDA3937_RS12395at 2821.480 kb on + strand, within DDA3937_RS12395at 2821.481 kb on - strandat 2821.519 kb on - strand, within DDA3937_RS12395at 2821.519 kb on - strand, within DDA3937_RS12395at 2821.535 kb on + strand, within DDA3937_RS12395at 2821.540 kb on - strand, within DDA3937_RS12395at 2821.557 kb on + strand, within DDA3937_RS12395at 2821.557 kb on + strand, within DDA3937_RS12395at 2821.557 kb on + strand, within DDA3937_RS12395at 2821.558 kb on - strand, within DDA3937_RS12395at 2821.558 kb on - strand, within DDA3937_RS12395at 2821.558 kb on - strand, within DDA3937_RS12395at 2821.558 kb on - strand, within DDA3937_RS12395at 2821.558 kb on - strand, within DDA3937_RS12395at 2821.563 kb on + strand, within DDA3937_RS12395at 2821.563 kb on + strand, within DDA3937_RS12395at 2821.564 kb on - strand, within DDA3937_RS12395at 2821.588 kb on + strand, within DDA3937_RS12395at 2821.595 kb on - strand, within DDA3937_RS12395at 2821.597 kb on + strand, within DDA3937_RS12395at 2821.597 kb on + strand, within DDA3937_RS12395at 2821.597 kb on + strand, within DDA3937_RS12395at 2821.597 kb on + strandat 2821.597 kb on + strand, within DDA3937_RS12395at 2821.597 kb on + strandat 2821.597 kb on + strand, within DDA3937_RS12395at 2821.598 kb on - strand, within DDA3937_RS12395at 2821.598 kb on - strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.629 kb on + strand, within DDA3937_RS12395at 2821.630 kb on - strand, within DDA3937_RS12395at 2821.630 kb on - strand, within DDA3937_RS12395at 2821.630 kb on - strand, within DDA3937_RS12395at 2821.630 kb on - strand, within DDA3937_RS12395at 2821.821 kb on + strand, within DDA3937_RS12395at 2821.822 kb on - strand, within DDA3937_RS12395at 2822.002 kb on + strand, within DDA3937_RS12395at 2822.002 kb on + strand, within DDA3937_RS12395at 2822.002 kb on + strand, within DDA3937_RS12395at 2822.002 kb on + strand, within DDA3937_RS12395at 2822.003 kb on - strand, within DDA3937_RS12395at 2822.005 kb on + strand, within DDA3937_RS12395at 2822.006 kb on - strand, within DDA3937_RS12395

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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2,818,583 + DDA3937_RS12385 0.32 -0.0
2,818,584 - DDA3937_RS12385 0.32 -0.2
2,818,617 + DDA3937_RS12385 0.36 -0.3
2,818,617 + DDA3937_RS12385 0.36 +0.1
2,818,617 + DDA3937_RS12385 0.36 -0.6
2,818,617 + DDA3937_RS12385 0.36 -0.9
2,818,617 + DDA3937_RS12385 0.36 -0.6
2,818,617 + DDA3937_RS12385 0.36 +0.4
2,818,618 - DDA3937_RS12385 0.36 +0.4
2,818,618 - DDA3937_RS12385 0.36 +0.8
2,818,618 - DDA3937_RS12385 0.36 +1.2
2,818,618 - DDA3937_RS12385 0.36 -0.3
2,818,618 - DDA3937_RS12385 0.36 -1.2
2,818,619 + DDA3937_RS12385 0.36 +0.5
2,818,619 + DDA3937_RS12385 0.36 -0.4
2,818,619 + DDA3937_RS12385 0.36 -1.1
2,818,619 + DDA3937_RS12385 0.36 +0.5
2,818,619 + DDA3937_RS12385 0.36 -1.6
2,818,620 - DDA3937_RS12385 0.36 -0.8
2,818,620 - DDA3937_RS12385 0.36 +1.2
2,818,620 - DDA3937_RS12385 0.36 -0.1
2,818,620 - DDA3937_RS12385 0.36 +0.2
2,818,620 - DDA3937_RS12385 0.36 +1.1
2,818,620 - DDA3937_RS12385 0.36 +0.2
2,818,620 - DDA3937_RS12385 0.36 -0.8
2,818,620 - DDA3937_RS12385 0.36 +0.5
2,818,706 + DDA3937_RS12385 0.46 +1.4
2,818,817 - DDA3937_RS12385 0.58 +1.1
2,818,919 + DDA3937_RS12385 0.70 -1.4
2,818,919 + DDA3937_RS12385 0.70 -2.2
2,818,941 - DDA3937_RS12385 0.72 +0.6
2,818,941 - DDA3937_RS12385 0.72 -1.3
2,818,941 - DDA3937_RS12385 0.72 +0.3
2,818,970 + DDA3937_RS12385 0.75 +1.4
2,818,971 - DDA3937_RS12385 0.75 -1.4
2,818,974 + DDA3937_RS12385 0.76 -0.3
2,818,975 - DDA3937_RS12385 0.76 -0.4
2,819,026 - DDA3937_RS12385 0.82 +1.1
2,819,026 - DDA3937_RS12385 0.82 +2.5
2,819,053 - DDA3937_RS12385 0.85 -1.2
2,819,053 - DDA3937_RS12385 0.85 -0.1
2,819,053 - DDA3937_RS12385 0.85 -0.0
2,819,053 - DDA3937_RS12385 0.85 -1.1
2,819,070 + DDA3937_RS12385 0.86 -1.1
2,819,091 + DDA3937_RS12385 0.89 -0.8
2,819,091 + DDA3937_RS12385 0.89 -1.3
2,819,091 + DDA3937_RS12385 0.89 -2.2
2,819,092 - DDA3937_RS12385 0.89 -0.6
2,819,119 + -1.2
2,819,119 + -0.6
2,819,122 + -2.2
2,819,159 + -1.2
2,819,189 - -0.8
2,819,382 + -1.9
2,819,382 + -1.2
2,819,382 + +1.2
2,819,383 - +0.4
2,819,383 - -2.2
2,819,383 - +0.4
2,819,383 - -0.3
2,819,383 - -0.0
2,819,383 - +1.0
2,819,383 - -0.2
2,819,389 - -1.2
2,819,506 - -1.6
2,819,565 - -0.6
2,819,565 - -0.6
2,819,573 + -0.2
2,819,729 + DDA3937_RS12390 0.18 -1.9
2,819,771 + DDA3937_RS12390 0.20 -0.5
2,819,787 + DDA3937_RS12390 0.21 -0.9
2,819,930 + DDA3937_RS12390 0.31 -2.2
2,819,931 - DDA3937_RS12390 0.31 -1.9
2,819,931 - DDA3937_RS12390 0.31 -2.4
2,820,194 + -0.6
2,820,194 + DDA3937_RS12390 0.47 -1.6
2,820,331 + DDA3937_RS12390 0.56 -2.2
2,820,405 + DDA3937_RS12390 0.61 -2.9
2,820,406 - DDA3937_RS12390 0.61 -2.9
2,820,463 + DDA3937_RS12390 0.65 -3.9
2,820,464 - DDA3937_RS12390 0.65 -0.6
2,820,572 - DDA3937_RS12390 0.72 +0.4
2,820,623 + DDA3937_RS12390 0.75 -0.6
2,820,624 - DDA3937_RS12390 0.75 -2.6
2,820,802 - DDA3937_RS12390 0.86 -1.5
2,820,802 - DDA3937_RS12390 0.86 -1.1
2,820,802 - DDA3937_RS12390 0.86 +0.4
2,820,888 + -2.8
2,820,943 - +1.4
2,821,003 + -0.8
2,821,003 + -0.4
2,821,021 + -1.2
2,821,066 - +0.6
2,821,066 - +0.2
2,821,137 + -0.6
2,821,137 + -0.8
2,821,138 - +1.0
2,821,206 + +0.4
2,821,206 + +2.0
2,821,207 - -1.4
2,821,207 - -0.4
2,821,239 + -0.3
2,821,239 + -2.4
2,821,246 + -2.4
2,821,246 + -1.8
2,821,246 + +0.4
2,821,247 - +2.2
2,821,247 - +0.1
2,821,247 - -1.9
2,821,247 - +0.0
2,821,247 - -0.3
2,821,310 - DDA3937_RS12395 0.11 +0.4
2,821,310 - DDA3937_RS12395 0.11 +0.1
2,821,480 + DDA3937_RS12395 0.22 -3.1
2,821,480 + DDA3937_RS12395 0.22 -0.1
2,821,481 - -1.6
2,821,519 - DDA3937_RS12395 0.25 -1.7
2,821,519 - DDA3937_RS12395 0.25 -1.0
2,821,535 + DDA3937_RS12395 0.26 -2.4
2,821,540 - DDA3937_RS12395 0.26 -0.4
2,821,557 + DDA3937_RS12395 0.27 -0.8
2,821,557 + DDA3937_RS12395 0.27 -2.4
2,821,557 + DDA3937_RS12395 0.27 -0.4
2,821,558 - DDA3937_RS12395 0.27 +1.0
2,821,558 - DDA3937_RS12395 0.27 -0.0
2,821,558 - DDA3937_RS12395 0.27 -1.9
2,821,558 - DDA3937_RS12395 0.27 +1.2
2,821,558 - DDA3937_RS12395 0.27 +2.3
2,821,563 + DDA3937_RS12395 0.27 -0.5
2,821,563 + DDA3937_RS12395 0.27 +1.2
2,821,564 - DDA3937_RS12395 0.27 -0.0
2,821,588 + DDA3937_RS12395 0.29 -0.8
2,821,595 - DDA3937_RS12395 0.29 -2.4
2,821,597 + DDA3937_RS12395 0.30 -0.0
2,821,597 + DDA3937_RS12395 0.30 -1.1
2,821,597 + DDA3937_RS12395 0.30 -1.2
2,821,597 + -0.2
2,821,597 + DDA3937_RS12395 0.30 -0.6
2,821,597 + -0.9
2,821,597 + DDA3937_RS12395 0.30 +0.2
2,821,598 - DDA3937_RS12395 0.30 -0.5
2,821,598 - DDA3937_RS12395 0.30 -1.2
2,821,629 + DDA3937_RS12395 0.32 -0.0
2,821,629 + DDA3937_RS12395 0.32 -0.9
2,821,629 + DDA3937_RS12395 0.32 -0.1
2,821,629 + DDA3937_RS12395 0.32 -0.6
2,821,629 + DDA3937_RS12395 0.32 +0.4
2,821,629 + DDA3937_RS12395 0.32 -2.1
2,821,630 - DDA3937_RS12395 0.32 -2.4
2,821,630 - DDA3937_RS12395 0.32 -0.3
2,821,630 - DDA3937_RS12395 0.32 +0.5
2,821,630 - DDA3937_RS12395 0.32 -0.2
2,821,821 + DDA3937_RS12395 0.44 -1.1
2,821,822 - DDA3937_RS12395 0.44 -1.3
2,822,002 + DDA3937_RS12395 0.56 -0.9
2,822,002 + DDA3937_RS12395 0.56 -0.6
2,822,002 + DDA3937_RS12395 0.56 -1.9
2,822,002 + DDA3937_RS12395 0.56 -0.2
2,822,003 - DDA3937_RS12395 0.56 -0.6
2,822,005 + DDA3937_RS12395 0.56 +0.4
2,822,006 - DDA3937_RS12395 0.56 -0.0

Or see this region's nucleotide sequence