Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11960

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,718,435	+		DDA3937_RS11955	0.42	-2.0
2,718,435	+		DDA3937_RS11955	0.42	-1.4
2,718,435	+		DDA3937_RS11955	0.42	-3.0
2,718,436	-		DDA3937_RS11955	0.42	-3.0
2,718,516	+		DDA3937_RS11955	0.48	-0.3
2,718,517	-		DDA3937_RS11955	0.49	-1.3
2,718,517	-		DDA3937_RS11955	0.49	-0.9
2,718,520	+		DDA3937_RS11955	0.49	-1.7
2,718,521	-		DDA3937_RS11955	0.49	-1.2
2,718,553	+		DDA3937_RS11955	0.51	-1.5
2,718,553	+		DDA3937_RS11955	0.51	+3.2
2,718,553	+		DDA3937_RS11955	0.51	-0.3
2,718,553	+		DDA3937_RS11955	0.51	+0.0
2,718,553	+		DDA3937_RS11955	0.51	-0.5
2,718,554	-		DDA3937_RS11955	0.51	+0.3
2,718,554	-		DDA3937_RS11955	0.51	+0.1
2,718,554	-		DDA3937_RS11955	0.51	+3.0
2,718,555	+		DDA3937_RS11955	0.52	+0.1
2,718,555	+		DDA3937_RS11955	0.52	+0.9
2,718,567	+		DDA3937_RS11955	0.52	-0.3
2,718,568	-		DDA3937_RS11955	0.53	+0.4
2,718,581	-		DDA3937_RS11955	0.54	-2.7
2,718,710	+		DDA3937_RS11955	0.64	+1.7
2,718,710	+		DDA3937_RS11955	0.64	-0.7
2,718,725	+		DDA3937_RS11955	0.65	+1.3
2,718,725	+		DDA3937_RS11955	0.65	-1.2
2,718,746	+		DDA3937_RS11955	0.67	+0.5
2,718,746	+		DDA3937_RS11955	0.67	-1.5
2,718,747	-		DDA3937_RS11955	0.67	-0.0
2,718,768	+		DDA3937_RS11955	0.68	-0.9
2,718,769	-		DDA3937_RS11955	0.68	-0.9
2,718,808	+		DDA3937_RS11955	0.71	-0.5
2,718,809	-		DDA3937_RS11955	0.72	+0.7
2,718,923	-		DDA3937_RS11955	0.81	-1.3
2,718,926	+		DDA3937_RS11955	0.81	-0.3
2,718,926	+		DDA3937_RS11955	0.81	-1.0
2,718,926	+		DDA3937_RS11955	0.81	-1.8
2,718,927	-		DDA3937_RS11955	0.81	-0.5
2,718,927	-		DDA3937_RS11955	0.81	-0.1
2,718,927	-		DDA3937_RS11955	0.81	-0.3
2,718,970	+		DDA3937_RS11955	0.84	-1.3
2,719,078	+				+0.5
2,719,078	+				-2.7
2,719,078	+				-0.7
2,719,079	-				+0.2
2,719,217	+				+0.6
2,719,218	-				-0.3
2,719,239	-				-1.7
2,719,255	+				-1.3
2,719,256	-				+1.4
2,719,260	-				-1.0
2,719,270	+				+0.2
2,719,270	+				+0.7
2,719,270	+				-0.9
2,719,270	+				+1.0
2,719,270	+				+0.3
2,719,270	+				+0.7
2,719,270	+				+1.0
2,719,270	+				-0.1
2,719,270	+				-0.0
2,719,270	+				+1.2
2,719,271	-				-1.7
2,719,271	-				+1.3
2,719,271	-				+1.7
2,719,271	-				+0.8
2,719,271	-				-0.1
2,719,271	-				-0.4
2,719,271	-				-0.8
2,719,271	-				-0.1
2,719,272	+				-1.6
2,719,273	-				-1.7
2,719,276	+				+1.9
2,719,276	+				-0.9
2,719,300	-				+0.7
2,719,380	+				+0.4
2,719,516	+		DDA3937_RS11960	0.12	-0.3
2,719,516	+		DDA3937_RS11960	0.12	+0.6
2,719,638	-		DDA3937_RS11960	0.23	+0.7
2,719,655	+		DDA3937_RS11960	0.25	+0.4
2,719,656	-		DDA3937_RS11960	0.25	-0.3
2,719,713	+		DDA3937_RS11960	0.30	-0.6
2,719,713	+		DDA3937_RS11960	0.30	+0.3
2,719,713	+		DDA3937_RS11960	0.30	-0.7
2,719,714	-		DDA3937_RS11960	0.31	+1.0
2,719,714	-		DDA3937_RS11960	0.31	+0.9
2,719,714	-		DDA3937_RS11960	0.31	-2.3
2,719,714	-		DDA3937_RS11960	0.31	-2.5
2,719,714	-		DDA3937_RS11960	0.31	+0.5
2,719,931	+		DDA3937_RS11960	0.51	-1.5
2,719,932	-		DDA3937_RS11960	0.51	+1.2
2,719,932	-		DDA3937_RS11960	0.51	+1.1
2,719,986	-		DDA3937_RS11960	0.56	+1.7
2,720,039	+		DDA3937_RS11960	0.61	+0.9
2,720,040	-		DDA3937_RS11960	0.61	+0.3
2,720,040	-		DDA3937_RS11960	0.61	+0.0
2,720,040	-		DDA3937_RS11960	0.61	-1.8
2,720,113	+		DDA3937_RS11960	0.68	-0.0
2,720,164	+		DDA3937_RS11960	0.73	+1.2
2,720,164	+		DDA3937_RS11960	0.73	+0.8
2,720,165	-		DDA3937_RS11960	0.73	+0.1
2,720,165	-		DDA3937_RS11960	0.73	+1.1
2,720,165	-		DDA3937_RS11960	0.73	-0.5
2,720,168	+		DDA3937_RS11960	0.74	-2.1
2,720,168	+		DDA3937_RS11960	0.74	+0.6
2,720,169	-		DDA3937_RS11960	0.74	-0.2
2,720,195	+		DDA3937_RS11960	0.76	-0.5
2,720,195	+		DDA3937_RS11960	0.76	+0.5
2,720,219	+		DDA3937_RS11960	0.78	-0.8
2,720,219	+		DDA3937_RS11960	0.78	+1.4
2,720,219	+		DDA3937_RS11960	0.78	+0.3
2,720,220	-		DDA3937_RS11960	0.79	-0.2
2,720,220	-		DDA3937_RS11960	0.79	-1.3
2,720,220	-		DDA3937_RS11960	0.79	-1.0
2,720,239	+				+1.1
2,720,240	-		DDA3937_RS11960	0.80	+0.0
2,720,303	+		DDA3937_RS11960	0.86	+0.1
2,720,491	+				-0.7
2,720,491	+				-0.4
2,720,492	-				-0.6
2,720,499	+				+0.8
2,720,500	-				-3.5
2,720,510	+				+0.3
2,720,511	-				+2.0
2,720,511	-				+0.2
2,720,512	+				-0.7
2,720,512	+				+0.8
2,720,528	-				+1.3
2,720,578	+				-1.3
2,720,657	+				+1.0
2,720,658	-				+1.5
2,720,758	-				+0.9
2,720,806	+		DDA3937_RS11965	0.10	+1.8
2,720,806	+		DDA3937_RS11965	0.10	-0.5
2,720,807	-		DDA3937_RS11965	0.10	+0.5
2,720,807	-		DDA3937_RS11965	0.10	+1.6
2,720,807	-		DDA3937_RS11965	0.10	+0.9
2,720,815	-		DDA3937_RS11965	0.11	+0.4
2,720,820	+		DDA3937_RS11965	0.11	+1.4
2,720,820	+		DDA3937_RS11965	0.11	+2.1
2,720,820	+		DDA3937_RS11965	0.11	+2.1
2,720,838	-		DDA3937_RS11965	0.12	+0.5
2,720,861	+		DDA3937_RS11965	0.13	+1.1
2,720,861	+		DDA3937_RS11965	0.13	-0.0
2,720,861	+		DDA3937_RS11965	0.13	+1.1
2,720,862	-		DDA3937_RS11965	0.13	+0.0
2,720,947	-		DDA3937_RS11965	0.17	+2.0
2,720,948	+		DDA3937_RS11965	0.17	-0.3
2,720,949	-		DDA3937_RS11965	0.17	+0.0
2,720,949	-		DDA3937_RS11965	0.17	+0.2
2,720,949	-		DDA3937_RS11965	0.17	+1.0
2,721,057	+		DDA3937_RS11965	0.23	+0.8
2,721,058	-		DDA3937_RS11965	0.23	+0.9
2,721,081	+		DDA3937_RS11965	0.24	-0.2
2,721,082	-		DDA3937_RS11965	0.24	+1.0
2,721,086	+		DDA3937_RS11965	0.24	+0.9
2,721,087	-		DDA3937_RS11965	0.24	+0.1
2,721,104	+		DDA3937_RS11965	0.25	+0.7
2,721,105	-		DDA3937_RS11965	0.25	+1.8
2,721,105	-		DDA3937_RS11965	0.25	+1.8
2,721,105	-		DDA3937_RS11965	0.25	+1.3
2,721,152	+		DDA3937_RS11965	0.27	+0.5
2,721,308	+		DDA3937_RS11965	0.35	+0.2
2,721,308	+		DDA3937_RS11965	0.35	-0.1
2,721,309	-		DDA3937_RS11965	0.35	+1.0
2,721,311	+		DDA3937_RS11965	0.35	+3.8
2,721,311	+		DDA3937_RS11965	0.35	+0.3
2,721,311	+		DDA3937_RS11965	0.35	-1.2
2,721,311	+		DDA3937_RS11965	0.35	+1.4
2,721,312	-		DDA3937_RS11965	0.35	+1.3
2,721,312	-		DDA3937_RS11965	0.35	+1.0
2,721,312	-		DDA3937_RS11965	0.35	+1.7
2,721,315	+		DDA3937_RS11965	0.36	+2.1
2,721,315	+		DDA3937_RS11965	0.36	+0.7
2,721,315	+		DDA3937_RS11965	0.36	-1.3
2,721,315	+		DDA3937_RS11965	0.36	-0.4
2,721,316	-		DDA3937_RS11965	0.36	-0.4
2,721,316	-		DDA3937_RS11965	0.36	+0.8
2,721,316	-		DDA3937_RS11965	0.36	+0.6
2,721,316	-		DDA3937_RS11965	0.36	+0.8
2,721,316	-		DDA3937_RS11965	0.36	+0.1
2,721,316	-		DDA3937_RS11965	0.36	+1.4
2,721,333	+		DDA3937_RS11965	0.36	-0.2