Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10455

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,352,607	+				-0.2
2,352,607	+				-1.0
2,352,607	+				-3.5
2,352,607	+				-0.8
2,352,608	-				+0.8
2,352,662	+		DDA3937_RS10445	0.17	-1.7
2,352,699	-		DDA3937_RS10445	0.36	-2.2
2,352,757	-		DDA3937_RS10445	0.65	-0.8
2,352,787	+		DDA3937_RS10445	0.80	-0.4
2,352,788	-		DDA3937_RS10445	0.80	-0.3
2,352,788	-		DDA3937_RS10445	0.80	+2.4
2,352,843	-				+0.3
2,352,851	+				-1.2
2,352,852	-				+0.7
2,353,044	+		DDA3937_RS10450	0.24	+1.2
2,353,044	+		DDA3937_RS10450	0.24	-0.3
2,353,044	+		DDA3937_RS10450	0.24	-1.0
2,353,044	+		DDA3937_RS10450	0.24	-0.8
2,353,045	-		DDA3937_RS10450	0.24	-3.4
2,353,048	+		DDA3937_RS10450	0.25	+0.0
2,353,048	+		DDA3937_RS10450	0.25	-0.1
2,353,048	+		DDA3937_RS10450	0.25	-0.2
2,353,049	-		DDA3937_RS10450	0.25	-1.3
2,353,049	-		DDA3937_RS10450	0.25	+1.2
2,353,054	+		DDA3937_RS10450	0.26	-1.5
2,353,079	+		DDA3937_RS10450	0.30	-2.0
2,353,080	-		DDA3937_RS10450	0.30	-1.0
2,353,080	-		DDA3937_RS10450	0.30	-0.3
2,353,080	-		DDA3937_RS10450	0.30	+2.0
2,353,080	-		DDA3937_RS10450	0.30	+1.9
2,353,150	+		DDA3937_RS10450	0.41	+0.2
2,353,151	-		DDA3937_RS10450	0.41	-0.6
2,353,151	-		DDA3937_RS10450	0.41	-0.7
2,353,209	-		DDA3937_RS10450	0.50	+1.3
2,353,209	-		DDA3937_RS10450	0.50	-1.0
2,353,209	-		DDA3937_RS10450	0.50	+2.2
2,353,209	-		DDA3937_RS10450	0.50	+0.2
2,353,242	-		DDA3937_RS10450	0.56	+0.0
2,353,262	+		DDA3937_RS10450	0.59	-0.7
2,353,262	+		DDA3937_RS10450	0.59	-0.5
2,353,263	-		DDA3937_RS10450	0.59	-1.0
2,353,371	-		DDA3937_RS10450	0.76	-1.1
2,353,399	+		DDA3937_RS10450	0.80	+0.8
2,353,399	+		DDA3937_RS10450	0.80	-0.3
2,353,400	-		DDA3937_RS10450	0.81	-1.7
2,353,400	-		DDA3937_RS10450	0.81	+0.2
2,353,430	-		DDA3937_RS10450	0.85	+0.8
2,353,492	-				-0.0
2,353,495	+				+3.7
2,353,495	+				+0.1
2,353,496	-				+0.2
2,353,496	-				+0.8
2,353,496	-				+0.5
2,353,612	+				-1.0
2,353,612	+				-1.0
2,353,612	+				+0.1
2,353,612	+				+0.6
2,353,617	+				+0.3
2,353,617	+				+1.9
2,353,689	-		DDA3937_RS10455	0.12	+0.6
2,353,691	-		DDA3937_RS10455	0.12	+1.1
2,353,691	-		DDA3937_RS10455	0.12	+0.9
2,353,718	-		DDA3937_RS10455	0.16	+0.4
2,353,767	-		DDA3937_RS10455	0.23	-0.3
2,353,787	+		DDA3937_RS10455	0.25	+1.0
2,353,801	+		DDA3937_RS10455	0.27	+0.7
2,353,813	+		DDA3937_RS10455	0.29	-0.1
2,353,842	-		DDA3937_RS10455	0.33	-0.4
2,353,842	-		DDA3937_RS10455	0.33	+0.8
2,353,842	-		DDA3937_RS10455	0.33	-1.7
2,353,842	-		DDA3937_RS10455	0.33	-0.3
2,353,865	+		DDA3937_RS10455	0.36	-0.2
2,353,866	-		DDA3937_RS10455	0.36	+0.1
2,353,866	-		DDA3937_RS10455	0.36	+0.1
2,353,866	-		DDA3937_RS10455	0.36	+0.1
2,353,867	+		DDA3937_RS10455	0.36	-0.8
2,353,880	+		DDA3937_RS10455	0.38	-0.7
2,353,883	+		DDA3937_RS10455	0.38	-0.5
2,353,883	+		DDA3937_RS10455	0.38	-1.7
2,353,883	+		DDA3937_RS10455	0.38	+1.1
2,353,883	+		DDA3937_RS10455	0.38	+0.2
2,353,884	-		DDA3937_RS10455	0.39	+0.6
2,353,904	+		DDA3937_RS10455	0.41	+0.1
2,353,905	-		DDA3937_RS10455	0.41	+0.3
2,353,920	-		DDA3937_RS10455	0.43	+1.3
2,353,922	-		DDA3937_RS10455	0.44	+0.0
2,353,922	-		DDA3937_RS10455	0.44	+0.6
2,353,922	-		DDA3937_RS10455	0.44	+1.5
2,353,931	-		DDA3937_RS10455	0.45	-1.9
2,353,954	+		DDA3937_RS10455	0.48	-0.4
2,353,954	+		DDA3937_RS10455	0.48	-3.3
2,353,954	+		DDA3937_RS10455	0.48	-2.3
2,353,955	-		DDA3937_RS10455	0.48	-2.7
2,353,958	-		DDA3937_RS10455	0.49	+1.7
2,353,958	-		DDA3937_RS10455	0.49	+0.3
2,353,970	+		DDA3937_RS10455	0.50	-0.7
2,353,992	-		DDA3937_RS10455	0.53	-0.5
2,353,992	-		DDA3937_RS10455	0.53	+1.3
2,353,992	-		DDA3937_RS10455	0.53	+0.1
2,353,993	+		DDA3937_RS10455	0.53	+0.7
2,353,993	+		DDA3937_RS10455	0.53	+0.5
2,353,993	+		DDA3937_RS10455	0.53	+0.8
2,354,002	+		DDA3937_RS10455	0.55	-0.7
2,354,012	+		DDA3937_RS10455	0.56	-1.0
2,354,013	-		DDA3937_RS10455	0.56	-2.0
2,354,077	+		DDA3937_RS10455	0.65	-2.3
2,354,077	+		DDA3937_RS10455	0.65	+0.1
2,354,077	+		DDA3937_RS10455	0.65	-1.3
2,354,077	+		DDA3937_RS10455	0.65	-1.3
2,354,078	-		DDA3937_RS10455	0.65	+0.9
2,354,119	+		DDA3937_RS10455	0.71	-1.3
2,354,119	+				-1.7
2,354,120	-		DDA3937_RS10455	0.71	-0.5
2,354,135	+		DDA3937_RS10455	0.73	-1.7
2,354,135	+		DDA3937_RS10455	0.73	+0.7
2,354,135	+				+1.1
2,354,136	-		DDA3937_RS10455	0.73	-1.1
2,354,289	-				-3.1
2,354,289	-				+2.2
2,354,289	-				+1.3
2,354,292	+				+0.9
2,354,292	+				+0.1
2,354,293	-				+0.9
2,354,355	+				-0.9
2,354,586	-				-0.7
2,354,611	+				+1.5
2,354,634	+				+1.1
2,354,662	+				-1.3
2,354,734	+				-1.2
2,354,742	+				-0.5
2,354,743	-				+1.9
2,354,789	-				-0.3
2,354,809	+				-2.8
2,354,810	-				+1.1
2,354,834	+				-0.1
2,354,887	+				+0.4
2,354,888	-				-2.3
2,355,011	-		DDA3937_RS10460	0.25	-2.0
2,355,011	-		DDA3937_RS10460	0.25	-3.0
2,355,011	-		DDA3937_RS10460	0.25	-0.5
2,355,094	+		DDA3937_RS10460	0.35	+0.3
2,355,094	+		DDA3937_RS10460	0.35	+0.0
2,355,094	+		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-2.0
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,098	+		DDA3937_RS10460	0.36	-0.7
2,355,098	+		DDA3937_RS10460	0.36	-1.2
2,355,098	+		DDA3937_RS10460	0.36	+0.3
2,355,098	+		DDA3937_RS10460	0.36	+0.3
2,355,099	-		DDA3937_RS10460	0.36	-2.0
2,355,099	-		DDA3937_RS10460	0.36	-0.3
2,355,099	-		DDA3937_RS10460	0.36	+0.3
2,355,099	-		DDA3937_RS10460	0.36	-1.7
2,355,099	-		DDA3937_RS10460	0.36	-1.5
2,355,099	-		DDA3937_RS10460	0.36	+0.3
2,355,161	+		DDA3937_RS10460	0.44	-0.7
2,355,162	-		DDA3937_RS10460	0.44	-0.7
2,355,162	-		DDA3937_RS10460	0.44	-0.7
2,355,225	+		DDA3937_RS10460	0.51	-0.7
2,355,274	+		DDA3937_RS10460	0.58	-2.0
2,355,285	+		DDA3937_RS10460	0.59	-0.7
2,355,286	-		DDA3937_RS10460	0.59	+0.6
2,355,286	-		DDA3937_RS10460	0.59	+2.9
2,355,286	-		DDA3937_RS10460	0.59	-2.0
2,355,286	-				+0.3
2,355,313	+		DDA3937_RS10460	0.62	-1.7
2,355,314	-		DDA3937_RS10460	0.62	-0.7
2,355,314	-		DDA3937_RS10460	0.62	+1.5
2,355,318	+		DDA3937_RS10460	0.63	-1.7