Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS10290 and DDA3937_RS10295 are separated by 265 nucleotides DDA3937_RS10295 and DDA3937_RS10300 are separated by 84 nucleotides
DDA3937_RS10290: DDA3937_RS10290 - signal peptide peptidase SppA, at 2,319,143 to 2,320,993
_RS10290
DDA3937_RS10295: DDA3937_RS10295 - NAD(P)H nitroreductase, at 2,321,259 to 2,321,810
_RS10295
DDA3937_RS10300: DDA3937_RS10300 - DNA topoisomerase III, at 2,321,895 to 2,323,820
_RS10300
Position (kb)
2321
2322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2320.277 kb on - strand, within DDA3937_RS10290 at 2320.284 kb on + strand, within DDA3937_RS10290 at 2320.377 kb on + strand, within DDA3937_RS10290 at 2320.377 kb on + strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.378 kb on - strand, within DDA3937_RS10290 at 2320.435 kb on - strand, within DDA3937_RS10290 at 2320.435 kb on - strand at 2320.435 kb on - strand, within DDA3937_RS10290 at 2320.437 kb on + strand, within DDA3937_RS10290 at 2320.438 kb on - strand, within DDA3937_RS10290 at 2320.438 kb on - strand, within DDA3937_RS10290 at 2320.445 kb on - strand, within DDA3937_RS10290 at 2320.448 kb on - strand, within DDA3937_RS10290 at 2320.472 kb on - strand, within DDA3937_RS10290 at 2320.491 kb on + strand, within DDA3937_RS10290 at 2320.518 kb on + strand, within DDA3937_RS10290 at 2320.518 kb on + strand, within DDA3937_RS10290 at 2320.518 kb on + strand, within DDA3937_RS10290 at 2320.518 kb on + strand, within DDA3937_RS10290 at 2320.521 kb on + strand, within DDA3937_RS10290 at 2320.602 kb on + strand, within DDA3937_RS10290 at 2320.603 kb on - strand, within DDA3937_RS10290 at 2320.603 kb on - strand, within DDA3937_RS10290 at 2320.603 kb on - strand, within DDA3937_RS10290 at 2320.603 kb on - strand, within DDA3937_RS10290 at 2320.792 kb on + strand, within DDA3937_RS10290 at 2320.823 kb on + strand at 2320.869 kb on + strand at 2320.870 kb on - strand at 2320.870 kb on - strand at 2320.870 kb on - strand at 2320.870 kb on - strand at 2320.918 kb on + strand at 2320.962 kb on - strand at 2321.124 kb on + strand at 2321.124 kb on + strand at 2321.125 kb on - strand at 2321.135 kb on + strand at 2321.136 kb on - strand at 2321.136 kb on - strand at 2321.139 kb on + strand at 2321.140 kb on - strand at 2321.140 kb on - strand at 2321.188 kb on + strand at 2321.221 kb on - strand at 2321.343 kb on - strand, within DDA3937_RS10295 at 2321.343 kb on - strand, within DDA3937_RS10295 at 2321.343 kb on - strand, within DDA3937_RS10295 at 2321.406 kb on - strand, within DDA3937_RS10295 at 2321.646 kb on - strand, within DDA3937_RS10295 at 2321.737 kb on + strand, within DDA3937_RS10295 at 2321.737 kb on + strand, within DDA3937_RS10295 at 2321.738 kb on - strand, within DDA3937_RS10295 at 2321.738 kb on - strand, within DDA3937_RS10295 at 2321.753 kb on + strand, within DDA3937_RS10295 at 2321.802 kb on + strand at 2321.802 kb on + strand at 2321.802 kb on + strand at 2321.802 kb on + strand at 2321.803 kb on - strand at 2321.809 kb on - strand at 2322.054 kb on + strand at 2322.224 kb on - strand, within DDA3937_RS10300 at 2322.246 kb on + strand, within DDA3937_RS10300 at 2322.246 kb on + strand, within DDA3937_RS10300 at 2322.247 kb on - strand at 2322.247 kb on - strand, within DDA3937_RS10300 at 2322.247 kb on - strand, within DDA3937_RS10300 at 2322.408 kb on + strand, within DDA3937_RS10300 at 2322.408 kb on + strand, within DDA3937_RS10300 at 2322.408 kb on + strand, within DDA3937_RS10300 at 2322.408 kb on + strand, within DDA3937_RS10300 at 2322.409 kb on - strand, within DDA3937_RS10300 at 2322.432 kb on + strand, within DDA3937_RS10300 at 2322.433 kb on - strand, within DDA3937_RS10300 at 2322.433 kb on - strand, within DDA3937_RS10300 at 2322.434 kb on + strand, within DDA3937_RS10300 at 2322.435 kb on - strand, within DDA3937_RS10300 at 2322.435 kb on - strand, within DDA3937_RS10300 at 2322.435 kb on - strand, within DDA3937_RS10300 at 2322.555 kb on + strand, within DDA3937_RS10300 at 2322.555 kb on + strand, within DDA3937_RS10300 at 2322.556 kb on - strand, within DDA3937_RS10300 at 2322.556 kb on - strand, within DDA3937_RS10300 at 2322.639 kb on + strand, within DDA3937_RS10300 at 2322.729 kb on + strand, within DDA3937_RS10300 at 2322.729 kb on + strand, within DDA3937_RS10300 at 2322.730 kb on - strand, within DDA3937_RS10300 at 2322.732 kb on - strand, within DDA3937_RS10300 at 2322.738 kb on - strand, within DDA3937_RS10300
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,320,277 - DDA3937_RS10290 0.61 +0.6 2,320,284 + DDA3937_RS10290 0.62 -1.6 2,320,377 + DDA3937_RS10290 0.67 -0.3 2,320,377 + DDA3937_RS10290 0.67 +0.1 2,320,378 - DDA3937_RS10290 0.67 -0.3 2,320,378 - DDA3937_RS10290 0.67 -2.0 2,320,378 - DDA3937_RS10290 0.67 -0.8 2,320,378 - DDA3937_RS10290 0.67 -0.2 2,320,378 - DDA3937_RS10290 0.67 -1.6 2,320,378 - DDA3937_RS10290 0.67 -0.2 2,320,435 - DDA3937_RS10290 0.70 +1.7 2,320,435 - -1.2 2,320,435 - DDA3937_RS10290 0.70 -0.3 2,320,437 + DDA3937_RS10290 0.70 +0.0 2,320,438 - DDA3937_RS10290 0.70 +1.3 2,320,438 - DDA3937_RS10290 0.70 -0.2 2,320,445 - DDA3937_RS10290 0.70 +1.0 2,320,448 - DDA3937_RS10290 0.71 -0.6 2,320,472 - DDA3937_RS10290 0.72 +0.5 2,320,491 + DDA3937_RS10290 0.73 +0.9 2,320,518 + DDA3937_RS10290 0.74 -0.1 2,320,518 + DDA3937_RS10290 0.74 +1.2 2,320,518 + DDA3937_RS10290 0.74 -0.0 2,320,518 + DDA3937_RS10290 0.74 +1.1 2,320,521 + DDA3937_RS10290 0.74 -0.4 2,320,602 + DDA3937_RS10290 0.79 -1.2 2,320,603 - DDA3937_RS10290 0.79 -0.1 2,320,603 - DDA3937_RS10290 0.79 +0.3 2,320,603 - DDA3937_RS10290 0.79 -0.0 2,320,603 - DDA3937_RS10290 0.79 -0.9 2,320,792 + DDA3937_RS10290 0.89 -0.8 2,320,823 + -0.3 2,320,869 + -1.4 2,320,870 - +0.1 2,320,870 - -1.2 2,320,870 - +0.4 2,320,870 - -0.6 2,320,918 + -1.4 2,320,962 - +0.6 2,321,124 + +2.4 2,321,124 + +1.2 2,321,125 - -1.0 2,321,135 + -0.1 2,321,136 - -0.6 2,321,136 - -1.2 2,321,139 + -0.9 2,321,140 - -0.5 2,321,140 - -0.4 2,321,188 + +1.2 2,321,221 - -0.1 2,321,343 - DDA3937_RS10295 0.15 -0.4 2,321,343 - DDA3937_RS10295 0.15 -3.0 2,321,343 - DDA3937_RS10295 0.15 -2.0 2,321,406 - DDA3937_RS10295 0.27 -2.2 2,321,646 - DDA3937_RS10295 0.70 -1.0 2,321,737 + DDA3937_RS10295 0.87 +0.1 2,321,737 + DDA3937_RS10295 0.87 -1.2 2,321,738 - DDA3937_RS10295 0.87 -0.7 2,321,738 - DDA3937_RS10295 0.87 -2.1 2,321,753 + DDA3937_RS10295 0.89 -2.1 2,321,802 + -2.1 2,321,802 + +0.4 2,321,802 + +0.7 2,321,802 + -0.8 2,321,803 - -2.0 2,321,809 - -1.1 2,322,054 + -1.1 2,322,224 - DDA3937_RS10300 0.17 +1.6 2,322,246 + DDA3937_RS10300 0.18 -1.5 2,322,246 + DDA3937_RS10300 0.18 -0.1 2,322,247 - +0.4 2,322,247 - DDA3937_RS10300 0.18 -0.2 2,322,247 - DDA3937_RS10300 0.18 +0.5 2,322,408 + DDA3937_RS10300 0.27 -0.2 2,322,408 + DDA3937_RS10300 0.27 -1.0 2,322,408 + DDA3937_RS10300 0.27 -1.1 2,322,408 + DDA3937_RS10300 0.27 -3.2 2,322,409 - DDA3937_RS10300 0.27 -0.7 2,322,432 + DDA3937_RS10300 0.28 +0.5 2,322,433 - DDA3937_RS10300 0.28 -2.1 2,322,433 - DDA3937_RS10300 0.28 -1.5 2,322,434 + DDA3937_RS10300 0.28 +0.9 2,322,435 - DDA3937_RS10300 0.28 +0.1 2,322,435 - DDA3937_RS10300 0.28 +0.8 2,322,435 - DDA3937_RS10300 0.28 +0.2 2,322,555 + DDA3937_RS10300 0.34 +0.4 2,322,555 + DDA3937_RS10300 0.34 -0.2 2,322,556 - DDA3937_RS10300 0.34 +0.6 2,322,556 - DDA3937_RS10300 0.34 -0.2 2,322,639 + DDA3937_RS10300 0.39 -0.6 2,322,729 + DDA3937_RS10300 0.43 +0.4 2,322,729 + DDA3937_RS10300 0.43 -1.1 2,322,730 - DDA3937_RS10300 0.43 -1.1 2,322,732 - DDA3937_RS10300 0.43 -0.6 2,322,738 - DDA3937_RS10300 0.44 -1.6
Or see this region's nucleotide sequence