Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10295

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS10290 and DDA3937_RS10295 are separated by 265 nucleotidesDDA3937_RS10295 and DDA3937_RS10300 are separated by 84 nucleotides DDA3937_RS10290: DDA3937_RS10290 - signal peptide peptidase SppA, at 2,319,143 to 2,320,993 _RS10290 DDA3937_RS10295: DDA3937_RS10295 - NAD(P)H nitroreductase, at 2,321,259 to 2,321,810 _RS10295 DDA3937_RS10300: DDA3937_RS10300 - DNA topoisomerase III, at 2,321,895 to 2,323,820 _RS10300 Position (kb) 2321 2322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2320.277 kb on - strand, within DDA3937_RS10290at 2320.284 kb on + strand, within DDA3937_RS10290at 2320.377 kb on + strand, within DDA3937_RS10290at 2320.377 kb on + strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.378 kb on - strand, within DDA3937_RS10290at 2320.435 kb on - strand, within DDA3937_RS10290at 2320.435 kb on - strandat 2320.435 kb on - strand, within DDA3937_RS10290at 2320.437 kb on + strand, within DDA3937_RS10290at 2320.438 kb on - strand, within DDA3937_RS10290at 2320.438 kb on - strand, within DDA3937_RS10290at 2320.445 kb on - strand, within DDA3937_RS10290at 2320.448 kb on - strand, within DDA3937_RS10290at 2320.472 kb on - strand, within DDA3937_RS10290at 2320.491 kb on + strand, within DDA3937_RS10290at 2320.518 kb on + strand, within DDA3937_RS10290at 2320.518 kb on + strand, within DDA3937_RS10290at 2320.518 kb on + strand, within DDA3937_RS10290at 2320.518 kb on + strand, within DDA3937_RS10290at 2320.521 kb on + strand, within DDA3937_RS10290at 2320.602 kb on + strand, within DDA3937_RS10290at 2320.603 kb on - strand, within DDA3937_RS10290at 2320.603 kb on - strand, within DDA3937_RS10290at 2320.603 kb on - strand, within DDA3937_RS10290at 2320.603 kb on - strand, within DDA3937_RS10290at 2320.792 kb on + strand, within DDA3937_RS10290at 2320.823 kb on + strandat 2320.869 kb on + strandat 2320.870 kb on - strandat 2320.870 kb on - strandat 2320.870 kb on - strandat 2320.870 kb on - strandat 2320.918 kb on + strandat 2320.962 kb on - strandat 2321.124 kb on + strandat 2321.124 kb on + strandat 2321.125 kb on - strandat 2321.135 kb on + strandat 2321.136 kb on - strandat 2321.136 kb on - strandat 2321.139 kb on + strandat 2321.140 kb on - strandat 2321.140 kb on - strandat 2321.188 kb on + strandat 2321.221 kb on - strandat 2321.343 kb on - strand, within DDA3937_RS10295at 2321.343 kb on - strand, within DDA3937_RS10295at 2321.343 kb on - strand, within DDA3937_RS10295at 2321.406 kb on - strand, within DDA3937_RS10295at 2321.646 kb on - strand, within DDA3937_RS10295at 2321.737 kb on + strand, within DDA3937_RS10295at 2321.737 kb on + strand, within DDA3937_RS10295at 2321.738 kb on - strand, within DDA3937_RS10295at 2321.738 kb on - strand, within DDA3937_RS10295at 2321.753 kb on + strand, within DDA3937_RS10295at 2321.802 kb on + strandat 2321.802 kb on + strandat 2321.802 kb on + strandat 2321.802 kb on + strandat 2321.803 kb on - strandat 2321.809 kb on - strandat 2322.054 kb on + strandat 2322.224 kb on - strand, within DDA3937_RS10300at 2322.246 kb on + strand, within DDA3937_RS10300at 2322.246 kb on + strand, within DDA3937_RS10300at 2322.247 kb on - strandat 2322.247 kb on - strand, within DDA3937_RS10300at 2322.247 kb on - strand, within DDA3937_RS10300at 2322.408 kb on + strand, within DDA3937_RS10300at 2322.408 kb on + strand, within DDA3937_RS10300at 2322.408 kb on + strand, within DDA3937_RS10300at 2322.408 kb on + strand, within DDA3937_RS10300at 2322.409 kb on - strand, within DDA3937_RS10300at 2322.432 kb on + strand, within DDA3937_RS10300at 2322.433 kb on - strand, within DDA3937_RS10300at 2322.433 kb on - strand, within DDA3937_RS10300at 2322.434 kb on + strand, within DDA3937_RS10300at 2322.435 kb on - strand, within DDA3937_RS10300at 2322.435 kb on - strand, within DDA3937_RS10300at 2322.435 kb on - strand, within DDA3937_RS10300at 2322.555 kb on + strand, within DDA3937_RS10300at 2322.555 kb on + strand, within DDA3937_RS10300at 2322.556 kb on - strand, within DDA3937_RS10300at 2322.556 kb on - strand, within DDA3937_RS10300at 2322.639 kb on + strand, within DDA3937_RS10300at 2322.729 kb on + strand, within DDA3937_RS10300at 2322.729 kb on + strand, within DDA3937_RS10300at 2322.730 kb on - strand, within DDA3937_RS10300at 2322.732 kb on - strand, within DDA3937_RS10300at 2322.738 kb on - strand, within DDA3937_RS10300

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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2,320,277 - DDA3937_RS10290 0.61 +0.6
2,320,284 + DDA3937_RS10290 0.62 -1.6
2,320,377 + DDA3937_RS10290 0.67 -0.3
2,320,377 + DDA3937_RS10290 0.67 +0.1
2,320,378 - DDA3937_RS10290 0.67 -0.3
2,320,378 - DDA3937_RS10290 0.67 -2.0
2,320,378 - DDA3937_RS10290 0.67 -0.8
2,320,378 - DDA3937_RS10290 0.67 -0.2
2,320,378 - DDA3937_RS10290 0.67 -1.6
2,320,378 - DDA3937_RS10290 0.67 -0.2
2,320,435 - DDA3937_RS10290 0.70 +1.7
2,320,435 - -1.2
2,320,435 - DDA3937_RS10290 0.70 -0.3
2,320,437 + DDA3937_RS10290 0.70 +0.0
2,320,438 - DDA3937_RS10290 0.70 +1.3
2,320,438 - DDA3937_RS10290 0.70 -0.2
2,320,445 - DDA3937_RS10290 0.70 +1.0
2,320,448 - DDA3937_RS10290 0.71 -0.6
2,320,472 - DDA3937_RS10290 0.72 +0.5
2,320,491 + DDA3937_RS10290 0.73 +0.9
2,320,518 + DDA3937_RS10290 0.74 -0.1
2,320,518 + DDA3937_RS10290 0.74 +1.2
2,320,518 + DDA3937_RS10290 0.74 -0.0
2,320,518 + DDA3937_RS10290 0.74 +1.1
2,320,521 + DDA3937_RS10290 0.74 -0.4
2,320,602 + DDA3937_RS10290 0.79 -1.2
2,320,603 - DDA3937_RS10290 0.79 -0.1
2,320,603 - DDA3937_RS10290 0.79 +0.3
2,320,603 - DDA3937_RS10290 0.79 -0.0
2,320,603 - DDA3937_RS10290 0.79 -0.9
2,320,792 + DDA3937_RS10290 0.89 -0.8
2,320,823 + -0.3
2,320,869 + -1.4
2,320,870 - +0.1
2,320,870 - -1.2
2,320,870 - +0.4
2,320,870 - -0.6
2,320,918 + -1.4
2,320,962 - +0.6
2,321,124 + +2.4
2,321,124 + +1.2
2,321,125 - -1.0
2,321,135 + -0.1
2,321,136 - -0.6
2,321,136 - -1.2
2,321,139 + -0.9
2,321,140 - -0.5
2,321,140 - -0.4
2,321,188 + +1.2
2,321,221 - -0.1
2,321,343 - DDA3937_RS10295 0.15 -0.4
2,321,343 - DDA3937_RS10295 0.15 -3.0
2,321,343 - DDA3937_RS10295 0.15 -2.0
2,321,406 - DDA3937_RS10295 0.27 -2.2
2,321,646 - DDA3937_RS10295 0.70 -1.0
2,321,737 + DDA3937_RS10295 0.87 +0.1
2,321,737 + DDA3937_RS10295 0.87 -1.2
2,321,738 - DDA3937_RS10295 0.87 -0.7
2,321,738 - DDA3937_RS10295 0.87 -2.1
2,321,753 + DDA3937_RS10295 0.89 -2.1
2,321,802 + -2.1
2,321,802 + +0.4
2,321,802 + +0.7
2,321,802 + -0.8
2,321,803 - -2.0
2,321,809 - -1.1
2,322,054 + -1.1
2,322,224 - DDA3937_RS10300 0.17 +1.6
2,322,246 + DDA3937_RS10300 0.18 -1.5
2,322,246 + DDA3937_RS10300 0.18 -0.1
2,322,247 - +0.4
2,322,247 - DDA3937_RS10300 0.18 -0.2
2,322,247 - DDA3937_RS10300 0.18 +0.5
2,322,408 + DDA3937_RS10300 0.27 -0.2
2,322,408 + DDA3937_RS10300 0.27 -1.0
2,322,408 + DDA3937_RS10300 0.27 -1.1
2,322,408 + DDA3937_RS10300 0.27 -3.2
2,322,409 - DDA3937_RS10300 0.27 -0.7
2,322,432 + DDA3937_RS10300 0.28 +0.5
2,322,433 - DDA3937_RS10300 0.28 -2.1
2,322,433 - DDA3937_RS10300 0.28 -1.5
2,322,434 + DDA3937_RS10300 0.28 +0.9
2,322,435 - DDA3937_RS10300 0.28 +0.1
2,322,435 - DDA3937_RS10300 0.28 +0.8
2,322,435 - DDA3937_RS10300 0.28 +0.2
2,322,555 + DDA3937_RS10300 0.34 +0.4
2,322,555 + DDA3937_RS10300 0.34 -0.2
2,322,556 - DDA3937_RS10300 0.34 +0.6
2,322,556 - DDA3937_RS10300 0.34 -0.2
2,322,639 + DDA3937_RS10300 0.39 -0.6
2,322,729 + DDA3937_RS10300 0.43 +0.4
2,322,729 + DDA3937_RS10300 0.43 -1.1
2,322,730 - DDA3937_RS10300 0.43 -1.1
2,322,732 - DDA3937_RS10300 0.43 -0.6
2,322,738 - DDA3937_RS10300 0.44 -1.6

Or see this region's nucleotide sequence