Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10240

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,307,578	+		DDA3937_RS10230	0.43	-0.3
2,307,592	+		DDA3937_RS10230	0.45	-0.1
2,307,593	-		DDA3937_RS10230	0.45	+1.2
2,307,593	-		DDA3937_RS10230	0.45	+0.2
2,307,593	-		DDA3937_RS10230	0.45	-2.4
2,307,593	-		DDA3937_RS10230	0.45	-1.7
2,307,745	+		DDA3937_RS10230	0.64	+0.9
2,307,746	-		DDA3937_RS10230	0.64	+0.6
2,307,746	-		DDA3937_RS10230	0.64	-1.2
2,307,750	-				+0.3
2,307,750	-		DDA3937_RS10230	0.64	-2.2
2,307,750	-		DDA3937_RS10230	0.64	+0.1
2,308,016	+				+0.3
2,308,016	+				+0.8
2,308,078	-				+1.0
2,308,101	+				-0.3
2,308,178	+		DDA3937_RS23155	0.15	+1.4
2,308,179	-		DDA3937_RS23155	0.15	+0.2
2,308,179	-		DDA3937_RS23155	0.15	-0.7
2,308,257	+		DDA3937_RS23155	0.38	-0.7
2,308,409	+		DDA3937_RS23155	0.83	-0.3
2,308,409	+		DDA3937_RS23155	0.83	-0.5
2,308,410	-		DDA3937_RS23155	0.83	+0.1
2,308,441	+				+3.9
2,308,441	+				-0.4
2,308,442	-				-0.5
2,308,442	-				-2.5
2,308,442	-				-0.4
2,308,442	-				-0.4
2,308,442	-				-0.5
2,308,442	-				+0.1
2,308,442	-				+0.4
2,308,486	+				-0.3
2,308,531	+				-1.7
2,308,531	+				-1.7
2,308,531	+				+1.5
2,308,532	-				-1.0
2,308,532	-				-1.1
2,308,532	-				-1.2
2,308,532	-				-0.5
2,308,532	-				-1.4
2,308,532	-				+0.6
2,308,535	+				+0.3
2,308,535	+				-1.3
2,308,535	+				-1.1
2,308,535	+				-0.7
2,308,536	-				-0.9
2,308,536	-				-0.8
2,308,553	+				+0.6
2,308,553	+				+0.9
2,308,553	+				+0.3
2,308,553	+				-2.0
2,308,554	-				-0.7
2,308,597	+				+0.6
2,308,598	-				-1.7
2,308,642	+		DDA3937_RS10240	0.12	+0.1
2,308,642	+		DDA3937_RS10240	0.12	-2.7
2,308,643	-		DDA3937_RS10240	0.12	-2.8
2,308,643	-		DDA3937_RS10240	0.12	-0.0
2,308,648	+		DDA3937_RS10240	0.13	-0.8
2,308,648	+		DDA3937_RS10240	0.13	-0.7
2,308,648	+		DDA3937_RS10240	0.13	-0.8
2,308,648	+		DDA3937_RS10240	0.13	-0.1
2,308,648	+		DDA3937_RS10240	0.13	-1.5
2,308,648	+		DDA3937_RS10240	0.13	-0.7
2,308,649	-		DDA3937_RS10240	0.13	+0.2
2,308,649	-		DDA3937_RS10240	0.13	+0.5
2,308,649	-		DDA3937_RS10240	0.13	+0.1
2,308,651	+		DDA3937_RS10240	0.13	-3.4
2,308,651	+		DDA3937_RS10240	0.13	-0.3
2,308,651	+		DDA3937_RS10240	0.13	-1.0
2,308,651	+		DDA3937_RS10240	0.13	+0.3
2,308,651	+		DDA3937_RS10240	0.13	+0.2
2,308,652	-		DDA3937_RS10240	0.13	-0.5
2,308,652	-		DDA3937_RS10240	0.13	-0.9
2,308,769	-		DDA3937_RS10240	0.22	-1.0
2,308,840	+				+0.3
2,308,841	-		DDA3937_RS10240	0.28	-1.2
2,308,841	-		DDA3937_RS10240	0.28	+0.1
2,308,868	+		DDA3937_RS10240	0.30	-1.5
2,308,877	+		DDA3937_RS10240	0.31	-0.3
2,308,891	+		DDA3937_RS10240	0.32	+0.4
2,308,891	+		DDA3937_RS10240	0.32	+1.0
2,308,892	-		DDA3937_RS10240	0.32	+0.0
2,308,892	-		DDA3937_RS10240	0.32	+0.1
2,308,892	-		DDA3937_RS10240	0.32	-1.0
2,308,912	+		DDA3937_RS10240	0.33	-3.0
2,308,912	+		DDA3937_RS10240	0.33	+0.3
2,308,912	+		DDA3937_RS10240	0.33	-0.2
2,308,916	+		DDA3937_RS10240	0.34	-1.5
2,308,916	+		DDA3937_RS10240	0.34	+0.8
2,308,917	-		DDA3937_RS10240	0.34	-1.5
2,308,917	-		DDA3937_RS10240	0.34	-0.0
2,308,917	-		DDA3937_RS10240	0.34	-2.5
2,308,934	-		DDA3937_RS10240	0.35	-1.1
2,308,934	-		DDA3937_RS10240	0.35	-1.7
2,308,945	+		DDA3937_RS10240	0.36	-0.2
2,308,945	+		DDA3937_RS10240	0.36	-0.9
2,308,945	+		DDA3937_RS10240	0.36	-1.3
2,308,945	+		DDA3937_RS10240	0.36	-1.8
2,308,946	-		DDA3937_RS10240	0.36	-0.4
2,308,946	-		DDA3937_RS10240	0.36	-1.2
2,308,946	-		DDA3937_RS10240	0.36	+0.2
2,308,946	-		DDA3937_RS10240	0.36	-2.5
2,309,047	+		DDA3937_RS10240	0.44	+0.8
2,309,047	+		DDA3937_RS10240	0.44	+0.2
2,309,048	-		DDA3937_RS10240	0.44	-1.5
2,309,086	-		DDA3937_RS10240	0.47	+0.4
2,309,299	+		DDA3937_RS10240	0.64	-0.2
2,309,392	+		DDA3937_RS10240	0.71	-1.1
2,309,393	-		DDA3937_RS10240	0.71	+0.7
2,309,393	-		DDA3937_RS10240	0.71	-1.2
2,309,535	+		DDA3937_RS10240	0.82	-1.1
2,309,535	+		DDA3937_RS10240	0.82	-0.1
2,309,535	+		DDA3937_RS10240	0.82	-2.8
2,309,585	+		DDA3937_RS10240	0.86	+0.1
2,309,585	+		DDA3937_RS10240	0.86	-0.3
2,309,606	+		DDA3937_RS10240	0.88	-0.4
2,309,607	-		DDA3937_RS10240	0.88	-1.1
2,309,607	-		DDA3937_RS10240	0.88	-1.7
2,309,607	-		DDA3937_RS10240	0.88	-0.4
2,309,607	-		DDA3937_RS10240	0.88	+0.7
2,309,671	-				+0.3
2,309,671	-				-3.1
2,309,752	+				-1.7
2,309,752	+				-2.0
2,309,752	+				+2.4
2,309,753	-				-0.0
2,309,789	+				-1.4
2,309,789	+				-1.7
2,309,790	-				+0.1
2,309,790	-				-1.5
2,309,790	-				-1.7
2,309,790	-				-0.5
2,309,821	+				+0.2
2,309,822	-				+0.2
2,309,858	-				+2.7
2,309,858	-				-0.1
2,309,988	-				-0.7
2,310,001	+		DDA3937_RS10245	0.11	-1.4
2,310,205	+		DDA3937_RS10245	0.21	-1.2
2,310,205	+		DDA3937_RS10245	0.21	+0.1
2,310,206	-		DDA3937_RS10245	0.21	-1.1
2,310,206	-		DDA3937_RS10245	0.21	+1.3
2,310,214	+		DDA3937_RS10245	0.22	+0.7
2,310,214	+		DDA3937_RS10245	0.22	+0.6
2,310,215	-		DDA3937_RS10245	0.22	-1.3
2,310,215	-		DDA3937_RS10245	0.22	-1.6
2,310,248	-		DDA3937_RS10245	0.23	-1.1
2,310,248	-		DDA3937_RS10245	0.23	-1.0
2,310,295	+		DDA3937_RS10245	0.26	-1.0
2,310,295	+		DDA3937_RS10245	0.26	+0.2
2,310,388	+		DDA3937_RS10245	0.31	-0.1
2,310,388	+		DDA3937_RS10245	0.31	-0.5
2,310,388	+		DDA3937_RS10245	0.31	-0.7
2,310,388	+		DDA3937_RS10245	0.31	-1.5
2,310,389	-		DDA3937_RS10245	0.31	+0.1
2,310,485	+		DDA3937_RS10245	0.36	+0.1
2,310,486	-		DDA3937_RS10245	0.36	+0.3
2,310,486	-		DDA3937_RS10245	0.36	+0.1
2,310,486	-		DDA3937_RS10245	0.36	-0.7
2,310,505	+		DDA3937_RS10245	0.37	+0.6
2,310,514	+		DDA3937_RS10245	0.37	-1.9
2,310,523	+		DDA3937_RS10245	0.38	-0.2
2,310,568	+		DDA3937_RS10245	0.40	-0.5
2,310,568	+		DDA3937_RS10245	0.40	+0.6
2,310,568	+		DDA3937_RS10245	0.40	+1.3
2,310,568	+		DDA3937_RS10245	0.40	+0.3
2,310,568	+		DDA3937_RS10245	0.40	+0.8
2,310,568	+		DDA3937_RS10245	0.40	+0.3
2,310,569	-		DDA3937_RS10245	0.40	-1.2
2,310,569	-		DDA3937_RS10245	0.40	-1.6
2,310,569	-		DDA3937_RS10245	0.40	-1.0
2,310,569	-		DDA3937_RS10245	0.40	+0.1
2,310,569	-		DDA3937_RS10245	0.40	-0.7
2,310,569	-		DDA3937_RS10245	0.40	+1.3
2,310,586	+		DDA3937_RS10245	0.41	+0.5
2,310,586	+		DDA3937_RS10245	0.41	-0.1
2,310,586	+		DDA3937_RS10245	0.41	+0.3
2,310,586	+		DDA3937_RS10245	0.41	+0.3
2,310,587	-		DDA3937_RS10245	0.41	-0.5
2,310,587	-		DDA3937_RS10245	0.41	-2.5
2,310,587	-		DDA3937_RS10245	0.41	-1.9
2,310,590	+		DDA3937_RS10245	0.41	-1.3
2,310,590	+		DDA3937_RS10245	0.41	-0.8
2,310,591	-		DDA3937_RS10245	0.41	-0.9
2,310,591	-		DDA3937_RS10245	0.41	-2.0
2,310,707	-		DDA3937_RS10245	0.47	+0.4
2,310,740	-		DDA3937_RS10245	0.49	+0.5
2,310,757	+		DDA3937_RS10245	0.50	-1.8
2,310,757	+		DDA3937_RS10245	0.50	-3.2
2,310,757	+		DDA3937_RS10245	0.50	-2.2
2,310,757	+		DDA3937_RS10245	0.50	-2.5
2,310,758	-		DDA3937_RS10245	0.50	+2.0
2,310,758	-		DDA3937_RS10245	0.50	-0.7
2,310,758	-		DDA3937_RS10245	0.50	-0.1