Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09730

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09725 and DDA3937_RS09730 are separated by 14 nucleotidesDDA3937_RS09730 and DDA3937_RS09735 overlap by 4 nucleotides DDA3937_RS09725: DDA3937_RS09725 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,194,575 to 2,195,642 _RS09725 DDA3937_RS09730: DDA3937_RS09730 - histidinol-phosphate transaminase, at 2,195,657 to 2,196,727 _RS09730 DDA3937_RS09735: DDA3937_RS09735 - histidinol dehydrogenase, at 2,196,724 to 2,198,034 _RS09735 Position (kb) 2195 2196 2197Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2194.710 kb on - strand, within DDA3937_RS09725at 2194.723 kb on + strand, within DDA3937_RS09725at 2194.783 kb on + strand, within DDA3937_RS09725at 2194.784 kb on - strand, within DDA3937_RS09725at 2194.801 kb on + strand, within DDA3937_RS09725at 2194.867 kb on - strand, within DDA3937_RS09725at 2194.867 kb on - strand, within DDA3937_RS09725at 2194.969 kb on + strand, within DDA3937_RS09725at 2194.969 kb on + strandat 2194.970 kb on - strand, within DDA3937_RS09725at 2194.970 kb on - strand, within DDA3937_RS09725at 2194.992 kb on - strand, within DDA3937_RS09725at 2195.183 kb on + strand, within DDA3937_RS09725at 2195.184 kb on - strand, within DDA3937_RS09725at 2195.184 kb on - strand, within DDA3937_RS09725at 2195.266 kb on + strand, within DDA3937_RS09725at 2195.266 kb on + strand, within DDA3937_RS09725at 2195.267 kb on - strand, within DDA3937_RS09725at 2195.310 kb on + strand, within DDA3937_RS09725at 2195.310 kb on + strand, within DDA3937_RS09725at 2195.480 kb on + strand, within DDA3937_RS09725at 2195.634 kb on + strandat 2195.635 kb on - strandat 2195.635 kb on - strandat 2195.635 kb on - strandat 2195.659 kb on - strandat 2195.712 kb on + strandat 2195.728 kb on + strandat 2195.842 kb on - strand, within DDA3937_RS09730at 2195.842 kb on - strand, within DDA3937_RS09730at 2195.859 kb on + strand, within DDA3937_RS09730at 2195.860 kb on - strand, within DDA3937_RS09730at 2195.860 kb on - strand, within DDA3937_RS09730at 2195.860 kb on - strand, within DDA3937_RS09730at 2195.862 kb on - strand, within DDA3937_RS09730at 2196.097 kb on + strand, within DDA3937_RS09730at 2196.177 kb on + strand, within DDA3937_RS09730at 2196.177 kb on + strand, within DDA3937_RS09730at 2196.177 kb on + strand, within DDA3937_RS09730at 2196.178 kb on - strand, within DDA3937_RS09730at 2196.178 kb on - strand, within DDA3937_RS09730at 2196.178 kb on - strand, within DDA3937_RS09730at 2196.178 kb on - strand, within DDA3937_RS09730at 2196.285 kb on + strand, within DDA3937_RS09730at 2196.285 kb on + strand, within DDA3937_RS09730at 2196.285 kb on + strand, within DDA3937_RS09730at 2196.285 kb on + strand, within DDA3937_RS09730at 2196.286 kb on - strand, within DDA3937_RS09730at 2196.286 kb on - strand, within DDA3937_RS09730at 2196.286 kb on - strand, within DDA3937_RS09730at 2196.399 kb on + strand, within DDA3937_RS09730at 2196.399 kb on + strand, within DDA3937_RS09730at 2196.399 kb on + strand, within DDA3937_RS09730at 2196.400 kb on - strand, within DDA3937_RS09730at 2196.400 kb on - strand, within DDA3937_RS09730at 2196.400 kb on - strand, within DDA3937_RS09730at 2196.400 kb on - strand, within DDA3937_RS09730at 2196.408 kb on + strand, within DDA3937_RS09730at 2196.409 kb on - strand, within DDA3937_RS09730at 2196.431 kb on - strand, within DDA3937_RS09730at 2196.440 kb on - strand, within DDA3937_RS09730at 2196.528 kb on + strand, within DDA3937_RS09730at 2196.604 kb on - strand, within DDA3937_RS09730at 2196.604 kb on - strandat 2196.715 kb on + strandat 2196.715 kb on + strandat 2196.716 kb on - strandat 2196.896 kb on + strand, within DDA3937_RS09735at 2196.896 kb on + strand, within DDA3937_RS09735at 2196.896 kb on + strand, within DDA3937_RS09735at 2196.897 kb on - strandat 2196.897 kb on - strand, within DDA3937_RS09735at 2196.909 kb on - strand, within DDA3937_RS09735at 2196.914 kb on + strand, within DDA3937_RS09735at 2196.915 kb on - strand, within DDA3937_RS09735at 2196.915 kb on - strand, within DDA3937_RS09735at 2196.915 kb on - strand, within DDA3937_RS09735at 2197.006 kb on - strand, within DDA3937_RS09735at 2197.006 kb on - strand, within DDA3937_RS09735at 2197.175 kb on - strand, within DDA3937_RS09735at 2197.183 kb on + strand, within DDA3937_RS09735at 2197.184 kb on - strand, within DDA3937_RS09735at 2197.335 kb on + strand, within DDA3937_RS09735at 2197.336 kb on - strand, within DDA3937_RS09735at 2197.354 kb on + strand, within DDA3937_RS09735at 2197.355 kb on - strand, within DDA3937_RS09735at 2197.355 kb on - strand, within DDA3937_RS09735at 2197.391 kb on + strand, within DDA3937_RS09735at 2197.391 kb on + strand, within DDA3937_RS09735at 2197.392 kb on - strand, within DDA3937_RS09735at 2197.392 kb on - strand, within DDA3937_RS09735at 2197.638 kb on + strand, within DDA3937_RS09735at 2197.638 kb on + strand, within DDA3937_RS09735at 2197.638 kb on + strand, within DDA3937_RS09735at 2197.639 kb on - strand, within DDA3937_RS09735at 2197.639 kb on - strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.640 kb on + strand, within DDA3937_RS09735at 2197.641 kb on - strand, within DDA3937_RS09735at 2197.641 kb on - strand, within DDA3937_RS09735at 2197.641 kb on - strand, within DDA3937_RS09735at 2197.641 kb on - strand, within DDA3937_RS09735at 2197.641 kb on - strand, within DDA3937_RS09735at 2197.648 kb on + strand, within DDA3937_RS09735at 2197.649 kb on - strand, within DDA3937_RS09735at 2197.703 kb on - strand, within DDA3937_RS09735at 2197.703 kb on - strand, within DDA3937_RS09735

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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2,194,710 - DDA3937_RS09725 0.13 -1.9
2,194,723 + DDA3937_RS09725 0.14 -0.3
2,194,783 + DDA3937_RS09725 0.19 -2.1
2,194,784 - DDA3937_RS09725 0.20 -1.5
2,194,801 + DDA3937_RS09725 0.21 -2.0
2,194,867 - DDA3937_RS09725 0.27 -1.2
2,194,867 - DDA3937_RS09725 0.27 -3.6
2,194,969 + DDA3937_RS09725 0.37 -0.9
2,194,969 + -1.2
2,194,970 - DDA3937_RS09725 0.37 -2.2
2,194,970 - DDA3937_RS09725 0.37 -2.7
2,194,992 - DDA3937_RS09725 0.39 -3.2
2,195,183 + DDA3937_RS09725 0.57 -0.7
2,195,184 - DDA3937_RS09725 0.57 -2.0
2,195,184 - DDA3937_RS09725 0.57 -2.0
2,195,266 + DDA3937_RS09725 0.65 -2.7
2,195,266 + DDA3937_RS09725 0.65 -3.0
2,195,267 - DDA3937_RS09725 0.65 -2.2
2,195,310 + DDA3937_RS09725 0.69 -1.2
2,195,310 + DDA3937_RS09725 0.69 -4.0
2,195,480 + DDA3937_RS09725 0.85 -3.7
2,195,634 + -2.3
2,195,635 - -2.0
2,195,635 - -4.1
2,195,635 - -2.5
2,195,659 - -0.8
2,195,712 + -2.5
2,195,728 + -1.6
2,195,842 - DDA3937_RS09730 0.17 -3.0
2,195,842 - DDA3937_RS09730 0.17 -3.0
2,195,859 + DDA3937_RS09730 0.19 -4.2
2,195,860 - DDA3937_RS09730 0.19 -2.0
2,195,860 - DDA3937_RS09730 0.19 -3.6
2,195,860 - DDA3937_RS09730 0.19 -0.9
2,195,862 - DDA3937_RS09730 0.19 -1.6
2,196,097 + DDA3937_RS09730 0.41 -2.5
2,196,177 + DDA3937_RS09730 0.49 -1.6
2,196,177 + DDA3937_RS09730 0.49 -1.2
2,196,177 + DDA3937_RS09730 0.49 -1.2
2,196,178 - DDA3937_RS09730 0.49 -2.2
2,196,178 - DDA3937_RS09730 0.49 -1.0
2,196,178 - DDA3937_RS09730 0.49 -2.8
2,196,178 - DDA3937_RS09730 0.49 -2.0
2,196,285 + DDA3937_RS09730 0.59 -1.5
2,196,285 + DDA3937_RS09730 0.59 -2.4
2,196,285 + DDA3937_RS09730 0.59 -2.8
2,196,285 + DDA3937_RS09730 0.59 -2.5
2,196,286 - DDA3937_RS09730 0.59 -0.1
2,196,286 - DDA3937_RS09730 0.59 -1.2
2,196,286 - DDA3937_RS09730 0.59 -2.4
2,196,399 + DDA3937_RS09730 0.69 -2.6
2,196,399 + DDA3937_RS09730 0.69 -3.2
2,196,399 + DDA3937_RS09730 0.69 -2.8
2,196,400 - DDA3937_RS09730 0.69 -1.5
2,196,400 - DDA3937_RS09730 0.69 -1.6
2,196,400 - DDA3937_RS09730 0.69 -3.0
2,196,400 - DDA3937_RS09730 0.69 -2.2
2,196,408 + DDA3937_RS09730 0.70 -2.8
2,196,409 - DDA3937_RS09730 0.70 +0.4
2,196,431 - DDA3937_RS09730 0.72 -4.2
2,196,440 - DDA3937_RS09730 0.73 -0.2
2,196,528 + DDA3937_RS09730 0.81 +0.0
2,196,604 - DDA3937_RS09730 0.88 -1.7
2,196,604 - -1.2
2,196,715 + -3.0
2,196,715 + -3.1
2,196,716 - -2.7
2,196,896 + DDA3937_RS09735 0.13 -0.6
2,196,896 + DDA3937_RS09735 0.13 -0.5
2,196,896 + DDA3937_RS09735 0.13 -1.6
2,196,897 - -0.6
2,196,897 - DDA3937_RS09735 0.13 -2.2
2,196,909 - DDA3937_RS09735 0.14 -4.1
2,196,914 + DDA3937_RS09735 0.14 -1.2
2,196,915 - DDA3937_RS09735 0.15 -2.2
2,196,915 - DDA3937_RS09735 0.15 -1.5
2,196,915 - DDA3937_RS09735 0.15 -2.2
2,197,006 - DDA3937_RS09735 0.22 -1.2
2,197,006 - DDA3937_RS09735 0.22 -0.9
2,197,175 - DDA3937_RS09735 0.34 -3.8
2,197,183 + DDA3937_RS09735 0.35 -1.5
2,197,184 - DDA3937_RS09735 0.35 -3.2
2,197,335 + DDA3937_RS09735 0.47 -0.3
2,197,336 - DDA3937_RS09735 0.47 -2.9
2,197,354 + DDA3937_RS09735 0.48 -2.5
2,197,355 - DDA3937_RS09735 0.48 -1.5
2,197,355 - DDA3937_RS09735 0.48 -1.1
2,197,391 + DDA3937_RS09735 0.51 -1.2
2,197,391 + DDA3937_RS09735 0.51 -2.2
2,197,392 - DDA3937_RS09735 0.51 -1.8
2,197,392 - DDA3937_RS09735 0.51 -0.2
2,197,638 + DDA3937_RS09735 0.70 -3.8
2,197,638 + DDA3937_RS09735 0.70 -3.0
2,197,638 + DDA3937_RS09735 0.70 -4.1
2,197,639 - DDA3937_RS09735 0.70 -1.4
2,197,639 - DDA3937_RS09735 0.70 -3.9
2,197,640 + DDA3937_RS09735 0.70 -2.0
2,197,640 + DDA3937_RS09735 0.70 -2.5
2,197,640 + DDA3937_RS09735 0.70 -1.1
2,197,640 + DDA3937_RS09735 0.70 -0.6
2,197,640 + DDA3937_RS09735 0.70 -1.3
2,197,640 + DDA3937_RS09735 0.70 -0.9
2,197,641 - DDA3937_RS09735 0.70 -2.6
2,197,641 - DDA3937_RS09735 0.70 -2.8
2,197,641 - DDA3937_RS09735 0.70 -2.0
2,197,641 - DDA3937_RS09735 0.70 -3.1
2,197,641 - DDA3937_RS09735 0.70 -1.2
2,197,648 + DDA3937_RS09735 0.70 -1.6
2,197,649 - DDA3937_RS09735 0.71 -4.9
2,197,703 - DDA3937_RS09735 0.75 -1.5
2,197,703 - DDA3937_RS09735 0.75 -2.0

Or see this region's nucleotide sequence