Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09725 and DDA3937_RS09730 are separated by 14 nucleotides DDA3937_RS09730 and DDA3937_RS09735 overlap by 4 nucleotides
DDA3937_RS09725: DDA3937_RS09725 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,194,575 to 2,195,642
_RS09725
DDA3937_RS09730: DDA3937_RS09730 - histidinol-phosphate transaminase, at 2,195,657 to 2,196,727
_RS09730
DDA3937_RS09735: DDA3937_RS09735 - histidinol dehydrogenase, at 2,196,724 to 2,198,034
_RS09735
Position (kb)
2195
2196
2197 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2194.710 kb on - strand, within DDA3937_RS09725 at 2194.723 kb on + strand, within DDA3937_RS09725 at 2194.783 kb on + strand, within DDA3937_RS09725 at 2194.784 kb on - strand, within DDA3937_RS09725 at 2194.801 kb on + strand, within DDA3937_RS09725 at 2194.867 kb on - strand, within DDA3937_RS09725 at 2194.867 kb on - strand, within DDA3937_RS09725 at 2194.969 kb on + strand, within DDA3937_RS09725 at 2194.969 kb on + strand at 2194.970 kb on - strand, within DDA3937_RS09725 at 2194.970 kb on - strand, within DDA3937_RS09725 at 2194.992 kb on - strand, within DDA3937_RS09725 at 2195.183 kb on + strand, within DDA3937_RS09725 at 2195.184 kb on - strand, within DDA3937_RS09725 at 2195.184 kb on - strand, within DDA3937_RS09725 at 2195.266 kb on + strand, within DDA3937_RS09725 at 2195.266 kb on + strand, within DDA3937_RS09725 at 2195.267 kb on - strand, within DDA3937_RS09725 at 2195.310 kb on + strand, within DDA3937_RS09725 at 2195.310 kb on + strand, within DDA3937_RS09725 at 2195.480 kb on + strand, within DDA3937_RS09725 at 2195.634 kb on + strand at 2195.635 kb on - strand at 2195.635 kb on - strand at 2195.635 kb on - strand at 2195.659 kb on - strand at 2195.712 kb on + strand at 2195.728 kb on + strand at 2195.842 kb on - strand, within DDA3937_RS09730 at 2195.842 kb on - strand, within DDA3937_RS09730 at 2195.859 kb on + strand, within DDA3937_RS09730 at 2195.860 kb on - strand, within DDA3937_RS09730 at 2195.860 kb on - strand, within DDA3937_RS09730 at 2195.860 kb on - strand, within DDA3937_RS09730 at 2195.862 kb on - strand, within DDA3937_RS09730 at 2196.097 kb on + strand, within DDA3937_RS09730 at 2196.177 kb on + strand, within DDA3937_RS09730 at 2196.177 kb on + strand, within DDA3937_RS09730 at 2196.177 kb on + strand, within DDA3937_RS09730 at 2196.178 kb on - strand, within DDA3937_RS09730 at 2196.178 kb on - strand, within DDA3937_RS09730 at 2196.178 kb on - strand, within DDA3937_RS09730 at 2196.178 kb on - strand, within DDA3937_RS09730 at 2196.285 kb on + strand, within DDA3937_RS09730 at 2196.285 kb on + strand, within DDA3937_RS09730 at 2196.285 kb on + strand, within DDA3937_RS09730 at 2196.285 kb on + strand, within DDA3937_RS09730 at 2196.286 kb on - strand, within DDA3937_RS09730 at 2196.286 kb on - strand, within DDA3937_RS09730 at 2196.286 kb on - strand, within DDA3937_RS09730 at 2196.399 kb on + strand, within DDA3937_RS09730 at 2196.399 kb on + strand, within DDA3937_RS09730 at 2196.399 kb on + strand, within DDA3937_RS09730 at 2196.400 kb on - strand, within DDA3937_RS09730 at 2196.400 kb on - strand, within DDA3937_RS09730 at 2196.400 kb on - strand, within DDA3937_RS09730 at 2196.400 kb on - strand, within DDA3937_RS09730 at 2196.408 kb on + strand, within DDA3937_RS09730 at 2196.409 kb on - strand, within DDA3937_RS09730 at 2196.431 kb on - strand, within DDA3937_RS09730 at 2196.440 kb on - strand, within DDA3937_RS09730 at 2196.528 kb on + strand, within DDA3937_RS09730 at 2196.604 kb on - strand, within DDA3937_RS09730 at 2196.604 kb on - strand at 2196.715 kb on + strand at 2196.715 kb on + strand at 2196.716 kb on - strand at 2196.896 kb on + strand, within DDA3937_RS09735 at 2196.896 kb on + strand, within DDA3937_RS09735 at 2196.896 kb on + strand, within DDA3937_RS09735 at 2196.897 kb on - strand at 2196.897 kb on - strand, within DDA3937_RS09735 at 2196.909 kb on - strand, within DDA3937_RS09735 at 2196.914 kb on + strand, within DDA3937_RS09735 at 2196.915 kb on - strand, within DDA3937_RS09735 at 2196.915 kb on - strand, within DDA3937_RS09735 at 2196.915 kb on - strand, within DDA3937_RS09735 at 2197.006 kb on - strand, within DDA3937_RS09735 at 2197.006 kb on - strand, within DDA3937_RS09735 at 2197.175 kb on - strand, within DDA3937_RS09735 at 2197.183 kb on + strand, within DDA3937_RS09735 at 2197.184 kb on - strand, within DDA3937_RS09735 at 2197.335 kb on + strand, within DDA3937_RS09735 at 2197.336 kb on - strand, within DDA3937_RS09735 at 2197.354 kb on + strand, within DDA3937_RS09735 at 2197.355 kb on - strand, within DDA3937_RS09735 at 2197.355 kb on - strand, within DDA3937_RS09735 at 2197.391 kb on + strand, within DDA3937_RS09735 at 2197.391 kb on + strand, within DDA3937_RS09735 at 2197.392 kb on - strand, within DDA3937_RS09735 at 2197.392 kb on - strand, within DDA3937_RS09735 at 2197.638 kb on + strand, within DDA3937_RS09735 at 2197.638 kb on + strand, within DDA3937_RS09735 at 2197.638 kb on + strand, within DDA3937_RS09735 at 2197.639 kb on - strand, within DDA3937_RS09735 at 2197.639 kb on - strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.640 kb on + strand, within DDA3937_RS09735 at 2197.641 kb on - strand, within DDA3937_RS09735 at 2197.641 kb on - strand, within DDA3937_RS09735 at 2197.641 kb on - strand, within DDA3937_RS09735 at 2197.641 kb on - strand, within DDA3937_RS09735 at 2197.641 kb on - strand, within DDA3937_RS09735 at 2197.648 kb on + strand, within DDA3937_RS09735 at 2197.649 kb on - strand, within DDA3937_RS09735 at 2197.703 kb on - strand, within DDA3937_RS09735 at 2197.703 kb on - strand, within DDA3937_RS09735
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,194,710 - DDA3937_RS09725 0.13 -1.9 2,194,723 + DDA3937_RS09725 0.14 -0.3 2,194,783 + DDA3937_RS09725 0.19 -2.1 2,194,784 - DDA3937_RS09725 0.20 -1.5 2,194,801 + DDA3937_RS09725 0.21 -2.0 2,194,867 - DDA3937_RS09725 0.27 -1.2 2,194,867 - DDA3937_RS09725 0.27 -3.6 2,194,969 + DDA3937_RS09725 0.37 -0.9 2,194,969 + -1.2 2,194,970 - DDA3937_RS09725 0.37 -2.2 2,194,970 - DDA3937_RS09725 0.37 -2.7 2,194,992 - DDA3937_RS09725 0.39 -3.2 2,195,183 + DDA3937_RS09725 0.57 -0.7 2,195,184 - DDA3937_RS09725 0.57 -2.0 2,195,184 - DDA3937_RS09725 0.57 -2.0 2,195,266 + DDA3937_RS09725 0.65 -2.7 2,195,266 + DDA3937_RS09725 0.65 -3.0 2,195,267 - DDA3937_RS09725 0.65 -2.2 2,195,310 + DDA3937_RS09725 0.69 -1.2 2,195,310 + DDA3937_RS09725 0.69 -4.0 2,195,480 + DDA3937_RS09725 0.85 -3.7 2,195,634 + -2.3 2,195,635 - -2.0 2,195,635 - -4.1 2,195,635 - -2.5 2,195,659 - -0.8 2,195,712 + -2.5 2,195,728 + -1.6 2,195,842 - DDA3937_RS09730 0.17 -3.0 2,195,842 - DDA3937_RS09730 0.17 -3.0 2,195,859 + DDA3937_RS09730 0.19 -4.2 2,195,860 - DDA3937_RS09730 0.19 -2.0 2,195,860 - DDA3937_RS09730 0.19 -3.6 2,195,860 - DDA3937_RS09730 0.19 -0.9 2,195,862 - DDA3937_RS09730 0.19 -1.6 2,196,097 + DDA3937_RS09730 0.41 -2.5 2,196,177 + DDA3937_RS09730 0.49 -1.6 2,196,177 + DDA3937_RS09730 0.49 -1.2 2,196,177 + DDA3937_RS09730 0.49 -1.2 2,196,178 - DDA3937_RS09730 0.49 -2.2 2,196,178 - DDA3937_RS09730 0.49 -1.0 2,196,178 - DDA3937_RS09730 0.49 -2.8 2,196,178 - DDA3937_RS09730 0.49 -2.0 2,196,285 + DDA3937_RS09730 0.59 -1.5 2,196,285 + DDA3937_RS09730 0.59 -2.4 2,196,285 + DDA3937_RS09730 0.59 -2.8 2,196,285 + DDA3937_RS09730 0.59 -2.5 2,196,286 - DDA3937_RS09730 0.59 -0.1 2,196,286 - DDA3937_RS09730 0.59 -1.2 2,196,286 - DDA3937_RS09730 0.59 -2.4 2,196,399 + DDA3937_RS09730 0.69 -2.6 2,196,399 + DDA3937_RS09730 0.69 -3.2 2,196,399 + DDA3937_RS09730 0.69 -2.8 2,196,400 - DDA3937_RS09730 0.69 -1.5 2,196,400 - DDA3937_RS09730 0.69 -1.6 2,196,400 - DDA3937_RS09730 0.69 -3.0 2,196,400 - DDA3937_RS09730 0.69 -2.2 2,196,408 + DDA3937_RS09730 0.70 -2.8 2,196,409 - DDA3937_RS09730 0.70 +0.4 2,196,431 - DDA3937_RS09730 0.72 -4.2 2,196,440 - DDA3937_RS09730 0.73 -0.2 2,196,528 + DDA3937_RS09730 0.81 +0.0 2,196,604 - DDA3937_RS09730 0.88 -1.7 2,196,604 - -1.2 2,196,715 + -3.0 2,196,715 + -3.1 2,196,716 - -2.7 2,196,896 + DDA3937_RS09735 0.13 -0.6 2,196,896 + DDA3937_RS09735 0.13 -0.5 2,196,896 + DDA3937_RS09735 0.13 -1.6 2,196,897 - -0.6 2,196,897 - DDA3937_RS09735 0.13 -2.2 2,196,909 - DDA3937_RS09735 0.14 -4.1 2,196,914 + DDA3937_RS09735 0.14 -1.2 2,196,915 - DDA3937_RS09735 0.15 -2.2 2,196,915 - DDA3937_RS09735 0.15 -1.5 2,196,915 - DDA3937_RS09735 0.15 -2.2 2,197,006 - DDA3937_RS09735 0.22 -1.2 2,197,006 - DDA3937_RS09735 0.22 -0.9 2,197,175 - DDA3937_RS09735 0.34 -3.8 2,197,183 + DDA3937_RS09735 0.35 -1.5 2,197,184 - DDA3937_RS09735 0.35 -3.2 2,197,335 + DDA3937_RS09735 0.47 -0.3 2,197,336 - DDA3937_RS09735 0.47 -2.9 2,197,354 + DDA3937_RS09735 0.48 -2.5 2,197,355 - DDA3937_RS09735 0.48 -1.5 2,197,355 - DDA3937_RS09735 0.48 -1.1 2,197,391 + DDA3937_RS09735 0.51 -1.2 2,197,391 + DDA3937_RS09735 0.51 -2.2 2,197,392 - DDA3937_RS09735 0.51 -1.8 2,197,392 - DDA3937_RS09735 0.51 -0.2 2,197,638 + DDA3937_RS09735 0.70 -3.8 2,197,638 + DDA3937_RS09735 0.70 -3.0 2,197,638 + DDA3937_RS09735 0.70 -4.1 2,197,639 - DDA3937_RS09735 0.70 -1.4 2,197,639 - DDA3937_RS09735 0.70 -3.9 2,197,640 + DDA3937_RS09735 0.70 -2.0 2,197,640 + DDA3937_RS09735 0.70 -2.5 2,197,640 + DDA3937_RS09735 0.70 -1.1 2,197,640 + DDA3937_RS09735 0.70 -0.6 2,197,640 + DDA3937_RS09735 0.70 -1.3 2,197,640 + DDA3937_RS09735 0.70 -0.9 2,197,641 - DDA3937_RS09735 0.70 -2.6 2,197,641 - DDA3937_RS09735 0.70 -2.8 2,197,641 - DDA3937_RS09735 0.70 -2.0 2,197,641 - DDA3937_RS09735 0.70 -3.1 2,197,641 - DDA3937_RS09735 0.70 -1.2 2,197,648 + DDA3937_RS09735 0.70 -1.6 2,197,649 - DDA3937_RS09735 0.71 -4.9 2,197,703 - DDA3937_RS09735 0.75 -1.5 2,197,703 - DDA3937_RS09735 0.75 -2.0
Or see this region's nucleotide sequence