Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09575 and DDA3937_RS09580 are separated by 19 nucleotides DDA3937_RS09580 and DDA3937_RS09585 are separated by 228 nucleotides
DDA3937_RS09575: DDA3937_RS09575 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 2,155,847 to 2,157,568
_RS09575
DDA3937_RS09580: DDA3937_RS09580 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,157,588 to 2,159,354
_RS09580
DDA3937_RS09585: DDA3937_RS09585 - thioredoxin-disulfide reductase, at 2,159,583 to 2,160,539
_RS09585
Position (kb)
2157
2158
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2157.616 kb on - strand at 2157.646 kb on - strand at 2157.707 kb on - strand at 2157.837 kb on + strand, within DDA3937_RS09580 at 2158.027 kb on - strand at 2158.514 kb on - strand, within DDA3937_RS09580 at 2158.556 kb on - strand, within DDA3937_RS09580 at 2158.921 kb on + strand, within DDA3937_RS09580 at 2159.380 kb on - strand at 2159.380 kb on - strand at 2159.397 kb on - strand at 2159.399 kb on - strand at 2159.400 kb on + strand at 2159.494 kb on + strand at 2159.522 kb on + strand at 2159.532 kb on - strand at 2159.532 kb on - strand at 2159.585 kb on - strand at 2159.585 kb on - strand at 2159.585 kb on - strand at 2159.930 kb on + strand at 2160.024 kb on + strand, within DDA3937_RS09585 at 2160.025 kb on - strand, within DDA3937_RS09585 at 2160.049 kb on + strand, within DDA3937_RS09585 at 2160.050 kb on - strand at 2160.050 kb on - strand, within DDA3937_RS09585 at 2160.335 kb on + strand, within DDA3937_RS09585 at 2160.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,157,616 - +0.0 2,157,646 - -1.0 2,157,707 - -2.2 2,157,837 + DDA3937_RS09580 0.14 -1.6 2,158,027 - +1.4 2,158,514 - DDA3937_RS09580 0.52 -1.5 2,158,556 - DDA3937_RS09580 0.55 -1.6 2,158,921 + DDA3937_RS09580 0.75 -0.6 2,159,380 - +1.0 2,159,380 - +0.8 2,159,397 - -0.2 2,159,399 - -0.1 2,159,400 + -0.6 2,159,494 + +0.4 2,159,522 + -0.5 2,159,532 - +0.6 2,159,532 - -1.0 2,159,585 - +0.1 2,159,585 - +2.6 2,159,585 - -0.9 2,159,930 + -1.2 2,160,024 + DDA3937_RS09585 0.46 -1.2 2,160,025 - DDA3937_RS09585 0.46 -1.2 2,160,049 + DDA3937_RS09585 0.49 +0.8 2,160,050 - -1.6 2,160,050 - DDA3937_RS09585 0.49 -2.8 2,160,335 + DDA3937_RS09585 0.79 -2.0 2,160,336 - +0.4
Or see this region's nucleotide sequence