Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08725

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,968,638	-		DDA3937_RS08715	0.76	-0.5
1,968,638	-		DDA3937_RS08715	0.76	-0.8
1,968,651	+		DDA3937_RS08715	0.78	+0.4
1,968,652	-		DDA3937_RS08715	0.78	-2.1
1,968,688	+		DDA3937_RS08715	0.82	+2.9
1,968,688	+		DDA3937_RS08715	0.82	+0.1
1,968,689	-		DDA3937_RS08715	0.82	-1.6
1,968,724	+		DDA3937_RS08715	0.86	+0.1
1,968,724	+		DDA3937_RS08715	0.86	+1.6
1,968,724	+		DDA3937_RS08715	0.86	-0.3
1,968,725	-		DDA3937_RS08715	0.86	+1.1
1,968,725	-		DDA3937_RS08715	0.86	-1.5
1,968,725	-		DDA3937_RS08715	0.86	-1.0
1,968,725	-				+0.4
1,968,725	-		DDA3937_RS08715	0.86	-0.5
1,968,739	-		DDA3937_RS08715	0.87	-0.7
1,968,758	-		DDA3937_RS08715	0.89	-0.6
1,968,758	-		DDA3937_RS08715	0.89	+1.2
1,968,817	-				+1.2
1,968,947	-				+1.8
1,969,030	+				+0.4
1,969,030	+				+2.6
1,969,030	+				-1.7
1,969,030	+				+0.9
1,969,030	+				+2.2
1,969,030	+				+1.1
1,969,043	+		DDA3937_RS23125	0.14	+0.2
1,969,043	+		DDA3937_RS23125	0.14	+1.1
1,969,043	+		DDA3937_RS23125	0.14	+0.9
1,969,043	+		DDA3937_RS23125	0.14	-1.9
1,969,043	+		DDA3937_RS23125	0.14	-0.2
1,969,043	+		DDA3937_RS23125	0.14	-0.1
1,969,043	+		DDA3937_RS23125	0.14	+1.8
1,969,044	-		DDA3937_RS23125	0.14	-2.4
1,969,044	-		DDA3937_RS23125	0.14	-0.3
1,969,044	-		DDA3937_RS23125	0.14	-1.9
1,969,044	-		DDA3937_RS23125	0.14	+0.1
1,969,047	+		DDA3937_RS23125	0.15	-1.1
1,969,047	+		DDA3937_RS23125	0.15	+0.4
1,969,047	+		DDA3937_RS23125	0.15	-0.4
1,969,047	+		DDA3937_RS23125	0.15	+0.4
1,969,048	-		DDA3937_RS23125	0.15	+0.8
1,969,048	-		DDA3937_RS23125	0.15	-2.0
1,969,048	-		DDA3937_RS23125	0.15	-1.4
1,969,048	-		DDA3937_RS23125	0.15	-0.8
1,969,048	-		DDA3937_RS23125	0.15	+2.6
1,969,048	-		DDA3937_RS23125	0.15	+0.9
1,969,048	-		DDA3937_RS23125	0.15	-1.0
1,969,049	+		DDA3937_RS23125	0.15	+2.1
1,969,049	+		DDA3937_RS23125	0.15	-0.9
1,969,049	+		DDA3937_RS23125	0.15	+0.3
1,969,049	+		DDA3937_RS23125	0.15	-0.3
1,969,049	+		DDA3937_RS23125	0.15	+0.4
1,969,049	+		DDA3937_RS23125	0.15	+1.0
1,969,049	+		DDA3937_RS23125	0.15	+2.5
1,969,049	+		DDA3937_RS23125	0.15	+0.7
1,969,049	+		DDA3937_RS23125	0.15	+0.3
1,969,050	-		DDA3937_RS23125	0.16	-0.6
1,969,050	-		DDA3937_RS23125	0.16	+0.1
1,969,050	-		DDA3937_RS23125	0.16	-1.9
1,969,050	-		DDA3937_RS23125	0.16	-0.0
1,969,050	-		DDA3937_RS23125	0.16	+0.3
1,969,050	-		DDA3937_RS23125	0.16	-1.9
1,969,050	-		DDA3937_RS23125	0.16	-2.2
1,969,050	-		DDA3937_RS23125	0.16	-0.1
1,969,050	-		DDA3937_RS23125	0.16	-2.9
1,969,050	-		DDA3937_RS23125	0.16	-1.9
1,969,050	-		DDA3937_RS23125	0.16	+0.5
1,969,050	-		DDA3937_RS23125	0.16	-0.6
1,969,050	-		DDA3937_RS23125	0.16	-2.2
1,969,050	-		DDA3937_RS23125	0.16	+0.4
1,969,076	+		DDA3937_RS23125	0.23	+2.2
1,969,076	+		DDA3937_RS23125	0.23	+2.4
1,969,076	+		DDA3937_RS23125	0.23	-1.9
1,969,077	-		DDA3937_RS23125	0.24	-0.7
1,969,080	-		DDA3937_RS23125	0.24	+0.7
1,969,096	-		DDA3937_RS23125	0.29	+0.4
1,969,112	-		DDA3937_RS23125	0.34	+0.4
1,969,295	+		DDA3937_RS23125	0.88	+1.9
1,969,295	+		DDA3937_RS23125	0.88	-0.3
1,969,295	+		DDA3937_RS23125	0.88	-1.4
1,969,295	+		DDA3937_RS23125	0.88	-0.0
1,969,295	+		DDA3937_RS23125	0.88	-0.7
1,969,295	+		DDA3937_RS23125	0.88	+0.8
1,969,295	+		DDA3937_RS23125	0.88	+0.6
1,969,296	-		DDA3937_RS23125	0.88	+0.3
1,969,296	-		DDA3937_RS23125	0.88	-0.6
1,969,296	-		DDA3937_RS23125	0.88	+0.2
1,969,296	-		DDA3937_RS23125	0.88	-0.4
1,969,296	-		DDA3937_RS23125	0.88	-1.9
1,969,296	-		DDA3937_RS23125	0.88	-2.4
1,969,296	-		DDA3937_RS23125	0.88	-1.2
1,969,296	-		DDA3937_RS23125	0.88	-1.7
1,969,296	-		DDA3937_RS23125	0.88	-1.3
1,969,296	-		DDA3937_RS23125	0.88	+3.0
1,969,312	+				-1.2
1,969,330	+				+2.9
1,969,330	+				+0.8
1,969,330	+				+0.3
1,969,330	+				+1.4
1,969,331	-				-1.6
1,969,331	-				-0.3
1,969,447	+				+7.7
1,969,479	+				+4.3
1,969,480	-				-3.0
1,969,514	+				+2.8
1,969,528	-				-0.2
1,969,539	+				+0.7
1,969,539	+				+3.2
1,969,540	-				-2.4
1,969,580	+				+3.0
1,969,646	+				-0.8
1,969,646	+				+0.2
1,969,646	+				-1.4
1,969,646	+				-0.4
1,969,646	+				-0.6
1,969,647	-				-1.0
1,969,669	+				+1.8
1,969,678	+		DDA3937_RS08725	0.10	-1.0
1,969,702	-		DDA3937_RS08725	0.15	-1.9
1,969,738	+		DDA3937_RS08725	0.21	-0.5
1,969,738	+		DDA3937_RS08725	0.21	-0.7
1,969,754	+		DDA3937_RS08725	0.24	-0.5
1,969,792	+		DDA3937_RS08725	0.31	-2.7
1,969,792	+		DDA3937_RS08725	0.31	-1.2
1,969,793	-		DDA3937_RS08725	0.32	-1.2
1,969,803	+		DDA3937_RS08725	0.34	-0.5
1,969,803	+		DDA3937_RS08725	0.34	-1.4
1,969,807	-		DDA3937_RS08725	0.34	-1.4
1,969,807	-		DDA3937_RS08725	0.34	-1.6
1,969,845	+		DDA3937_RS08725	0.41	-2.0
1,969,846	-		DDA3937_RS08725	0.41	+4.5
1,969,909	+		DDA3937_RS08725	0.53	-1.6
1,969,910	-		DDA3937_RS08725	0.53	-2.9
1,969,910	-		DDA3937_RS08725	0.53	-0.4
1,969,952	-		DDA3937_RS08725	0.61	-1.0
1,969,952	-		DDA3937_RS08725	0.61	-2.6
1,969,968	-		DDA3937_RS08725	0.64	+0.4
1,970,000	+		DDA3937_RS08725	0.70	+1.1
1,970,000	+		DDA3937_RS08725	0.70	-1.2
1,970,003	-		DDA3937_RS08725	0.71	-2.4
1,970,003	-		DDA3937_RS08725	0.71	-2.2
1,970,003	-		DDA3937_RS08725	0.71	-1.0
1,970,065	+		DDA3937_RS08725	0.82	-1.4
1,970,156	+				-0.4
1,970,156	+				-1.9
1,970,157	-				+0.4
1,970,157	-				-0.7
1,970,157	-				-0.2
1,970,178	-				-2.3
1,970,197	+				-0.9
1,970,197	+				+0.2
1,970,198	-				+0.1
1,970,198	-				-0.1
1,970,207	+				-1.9
1,970,208	-				-1.6
1,970,208	-				+1.3
1,970,213	+				+0.4
1,970,213	+				-1.8
1,970,214	-				-0.2
1,970,214	-				-1.3
1,970,214	-				+0.3
1,970,214	-				+0.2
1,970,214	-				+0.8
1,970,223	+				-0.6
1,970,223	+				-0.6
1,970,223	+				-1.7
1,970,224	-				-2.9
1,970,224	-				-2.2
1,970,225	+				-0.6
1,970,225	+				+0.2
1,970,225	+				-0.1
1,970,225	+				+0.6
1,970,226	-				-2.2
1,970,226	-				+0.4
1,970,226	-				-1.7
1,970,226	-				-0.9
1,970,239	+				+0.7
1,970,240	-				+0.1
1,970,241	+				-2.6
1,970,241	+				-0.6
1,970,288	+				-0.1
1,970,288	+				+0.2
1,970,288	+				+0.1
1,970,292	+				+0.4
1,970,315	+				-1.3
1,970,315	+				-2.2
1,970,318	+				-0.6
1,970,319	-				-0.3
1,970,402	+		DDA3937_RS08730	0.17	+0.7
1,970,402	+		DDA3937_RS08730	0.17	+2.7
1,970,414	+		DDA3937_RS08730	0.19	-1.0
1,970,414	+		DDA3937_RS08730	0.19	-0.6
1,970,414	+		DDA3937_RS08730	0.19	-0.3
1,970,415	-		DDA3937_RS08730	0.19	+0.8
1,970,415	-		DDA3937_RS08730	0.19	+1.1
1,970,446	-		DDA3937_RS08730	0.23	+0.2
1,970,446	-		DDA3937_RS08730	0.23	-1.3
1,970,446	-		DDA3937_RS08730	0.23	+0.7
1,970,475	+		DDA3937_RS08730	0.27	-1.4
1,970,475	+		DDA3937_RS08730	0.27	-0.6
1,970,475	+		DDA3937_RS08730	0.27	-1.1
1,970,475	+		DDA3937_RS08730	0.27	-0.2
1,970,475	+		DDA3937_RS08730	0.27	-0.3
1,970,475	+		DDA3937_RS08730	0.27	-2.0
1,970,476	-		DDA3937_RS08730	0.28	-0.6
1,970,477	+		DDA3937_RS08730	0.28	+0.1
1,970,478	-		DDA3937_RS08730	0.28	+0.7
1,970,486	+		DDA3937_RS08730	0.29	+1.0
1,970,486	+		DDA3937_RS08730	0.29	-0.7
1,970,486	+		DDA3937_RS08730	0.29	-0.6
1,970,487	-				-1.2
1,970,487	-		DDA3937_RS08730	0.29	-0.4
1,970,606	+		DDA3937_RS08730	0.47	+0.4
1,970,606	+		DDA3937_RS08730	0.47	+0.1
1,970,607	-		DDA3937_RS08730	0.47	-0.6
1,970,646	+		DDA3937_RS08730	0.52	+0.5
1,970,647	-		DDA3937_RS08730	0.53	+1.9
1,970,647	-		DDA3937_RS08730	0.53	+0.4
1,970,647	-		DDA3937_RS08730	0.53	-1.6
1,970,647	-		DDA3937_RS08730	0.53	-0.8
1,970,679	+		DDA3937_RS08730	0.57	+0.1
1,970,714	+		DDA3937_RS08730	0.62	-0.6
1,970,714	+		DDA3937_RS08730	0.62	-0.3
1,970,715	-		DDA3937_RS08730	0.63	-0.7
1,970,783	+		DDA3937_RS08730	0.73	-2.2
1,970,813	+		DDA3937_RS08730	0.77	-1.2
1,970,814	-		DDA3937_RS08730	0.77	-0.7
1,970,814	-		DDA3937_RS08730	0.77	+0.9
1,970,814	-		DDA3937_RS08730	0.77	+1.4
1,970,828	+		DDA3937_RS08730	0.79	-2.2
1,970,828	+		DDA3937_RS08730	0.79	-2.4
1,970,829	-		DDA3937_RS08730	0.79	+0.0
1,970,829	-		DDA3937_RS08730	0.79	-2.2
1,970,829	-		DDA3937_RS08730	0.79	-0.4
1,970,829	-		DDA3937_RS08730	0.79	+0.8
1,970,829	-		DDA3937_RS08730	0.79	-2.0