Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06785 and DDA3937_RS06790 are separated by 178 nucleotides DDA3937_RS06790 and DDA3937_RS06795 are separated by 82 nucleotides
DDA3937_RS06785: DDA3937_RS06785 - NAD-dependent epimerase, at 1,518,286 to 1,519,293
_RS06785
DDA3937_RS06790: DDA3937_RS06790 - nucleotide sugar dehydrogenase, at 1,519,472 to 1,520,638
_RS06790
DDA3937_RS06795: DDA3937_RS06795 - UTP--glucose-1-phosphate uridylyltransferase, at 1,520,721 to 1,521,617
_RS06795
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1519.283 kb on - strand at 1519.313 kb on - strand at 1519.366 kb on + strand at 1519.366 kb on + strand at 1519.366 kb on + strand at 1519.379 kb on + strand at 1519.417 kb on + strand at 1520.636 kb on + strand at 1520.637 kb on - strand at 1520.637 kb on - strand at 1520.637 kb on - strand at 1520.642 kb on + strand at 1520.643 kb on - strand at 1520.643 kb on - strand at 1520.731 kb on + strand at 1520.731 kb on + strand at 1520.731 kb on + strand at 1520.731 kb on + strand at 1520.867 kb on + strand, within DDA3937_RS06795 at 1520.868 kb on - strand, within DDA3937_RS06795 at 1520.868 kb on - strand, within DDA3937_RS06795 at 1520.868 kb on - strand, within DDA3937_RS06795 at 1520.924 kb on + strand, within DDA3937_RS06795 at 1521.211 kb on + strand, within DDA3937_RS06795 at 1521.212 kb on - strand, within DDA3937_RS06795 at 1521.366 kb on + strand, within DDA3937_RS06795 at 1521.367 kb on - strand, within DDA3937_RS06795 at 1521.429 kb on - strand, within DDA3937_RS06795 at 1521.528 kb on + strand at 1521.615 kb on + strand at 1521.615 kb on + strand at 1521.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 1,519,283 - +0.4 1,519,313 - +0.8 1,519,366 + -1.0 1,519,366 + -0.5 1,519,366 + -0.4 1,519,379 + -2.0 1,519,417 + +0.6 1,520,636 + -1.8 1,520,637 - +4.2 1,520,637 - -1.4 1,520,637 - -1.0 1,520,642 + +1.5 1,520,643 - -0.3 1,520,643 - -0.8 1,520,731 + -0.8 1,520,731 + -0.1 1,520,731 + +1.4 1,520,731 + -0.2 1,520,867 + DDA3937_RS06795 0.16 +1.3 1,520,868 - DDA3937_RS06795 0.16 -0.2 1,520,868 - DDA3937_RS06795 0.16 -0.6 1,520,868 - DDA3937_RS06795 0.16 -1.8 1,520,924 + DDA3937_RS06795 0.23 -0.0 1,521,211 + DDA3937_RS06795 0.55 +0.2 1,521,212 - DDA3937_RS06795 0.55 -1.3 1,521,366 + DDA3937_RS06795 0.72 -0.4 1,521,367 - DDA3937_RS06795 0.72 -0.3 1,521,429 - DDA3937_RS06795 0.79 +0.8 1,521,528 + -0.2 1,521,615 + -0.4 1,521,615 + -0.2 1,521,619 + -0.5
Or see this region's nucleotide sequence