Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06790

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06785 and DDA3937_RS06790 are separated by 178 nucleotidesDDA3937_RS06790 and DDA3937_RS06795 are separated by 82 nucleotides DDA3937_RS06785: DDA3937_RS06785 - NAD-dependent epimerase, at 1,518,286 to 1,519,293 _RS06785 DDA3937_RS06790: DDA3937_RS06790 - nucleotide sugar dehydrogenase, at 1,519,472 to 1,520,638 _RS06790 DDA3937_RS06795: DDA3937_RS06795 - UTP--glucose-1-phosphate uridylyltransferase, at 1,520,721 to 1,521,617 _RS06795 Position (kb) 1519 1520 1521Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1519.283 kb on - strandat 1519.313 kb on - strandat 1519.366 kb on + strandat 1519.366 kb on + strandat 1519.366 kb on + strandat 1519.379 kb on + strandat 1519.417 kb on + strandat 1520.636 kb on + strandat 1520.637 kb on - strandat 1520.637 kb on - strandat 1520.637 kb on - strandat 1520.642 kb on + strandat 1520.643 kb on - strandat 1520.643 kb on - strandat 1520.731 kb on + strandat 1520.731 kb on + strandat 1520.731 kb on + strandat 1520.731 kb on + strandat 1520.867 kb on + strand, within DDA3937_RS06795at 1520.868 kb on - strand, within DDA3937_RS06795at 1520.868 kb on - strand, within DDA3937_RS06795at 1520.868 kb on - strand, within DDA3937_RS06795at 1520.924 kb on + strand, within DDA3937_RS06795at 1521.211 kb on + strand, within DDA3937_RS06795at 1521.212 kb on - strand, within DDA3937_RS06795at 1521.366 kb on + strand, within DDA3937_RS06795at 1521.367 kb on - strand, within DDA3937_RS06795at 1521.429 kb on - strand, within DDA3937_RS06795at 1521.528 kb on + strandat 1521.615 kb on + strandat 1521.615 kb on + strandat 1521.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,519,283 - +0.4
1,519,313 - +0.8
1,519,366 + -1.0
1,519,366 + -0.5
1,519,366 + -0.4
1,519,379 + -2.0
1,519,417 + +0.6
1,520,636 + -1.8
1,520,637 - +4.2
1,520,637 - -1.4
1,520,637 - -1.0
1,520,642 + +1.5
1,520,643 - -0.3
1,520,643 - -0.8
1,520,731 + -0.8
1,520,731 + -0.1
1,520,731 + +1.4
1,520,731 + -0.2
1,520,867 + DDA3937_RS06795 0.16 +1.3
1,520,868 - DDA3937_RS06795 0.16 -0.2
1,520,868 - DDA3937_RS06795 0.16 -0.6
1,520,868 - DDA3937_RS06795 0.16 -1.8
1,520,924 + DDA3937_RS06795 0.23 -0.0
1,521,211 + DDA3937_RS06795 0.55 +0.2
1,521,212 - DDA3937_RS06795 0.55 -1.3
1,521,366 + DDA3937_RS06795 0.72 -0.4
1,521,367 - DDA3937_RS06795 0.72 -0.3
1,521,429 - DDA3937_RS06795 0.79 +0.8
1,521,528 + -0.2
1,521,615 + -0.4
1,521,615 + -0.2
1,521,619 + -0.5

Or see this region's nucleotide sequence