Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05605

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS05595 and DDA3937_RS05600 are separated by 16 nucleotidesDDA3937_RS05600 and DDA3937_RS05605 overlap by 1 nucleotidesDDA3937_RS05605 and DDA3937_RS05610 overlap by 11 nucleotides DDA3937_RS05595: DDA3937_RS05595 - protoheme IX farnesyltransferase, at 1,249,533 to 1,250,423 _RS05595 DDA3937_RS05600: DDA3937_RS05600 - cytochrome o ubiquinol oxidase subunit IV, at 1,250,440 to 1,250,772 _RS05600 DDA3937_RS05605: DDA3937_RS05605 - cytochrome o ubiquinol oxidase subunit III, at 1,250,772 to 1,251,386 _RS05605 DDA3937_RS05610: DDA3937_RS05610 - cytochrome o ubiquinol oxidase subunit I, at 1,251,376 to 1,253,367 _RS05610 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -1 0 1 2at 1249.790 kb on + strand, within DDA3937_RS05595at 1249.800 kb on - strand, within DDA3937_RS05595at 1250.320 kb on + strand, within DDA3937_RS05595at 1250.418 kb on - strandat 1250.418 kb on - strandat 1251.108 kb on - strand, within DDA3937_RS05605at 1251.458 kb on + strandat 1251.458 kb on + strandat 1251.462 kb on - strandat 1251.462 kb on - strandat 1251.954 kb on - strand, within DDA3937_RS05610at 1251.964 kb on - strand, within DDA3937_RS05610at 1252.142 kb on - strand, within DDA3937_RS05610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
1,249,790 + DDA3937_RS05595 0.29 -0.8
1,249,800 - DDA3937_RS05595 0.30 -0.6
1,250,320 + DDA3937_RS05595 0.88 -1.1
1,250,418 - -1.2
1,250,418 - -1.3
1,251,108 - DDA3937_RS05605 0.55 +0.0
1,251,458 + +2.6
1,251,458 + -1.3
1,251,462 - +0.9
1,251,462 - -0.9
1,251,954 - DDA3937_RS05610 0.29 +0.4
1,251,964 - DDA3937_RS05610 0.30 +0.2
1,252,142 - DDA3937_RS05610 0.38 -1.3

Or see this region's nucleotide sequence