Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04310

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04305 and DDA3937_RS04310 are separated by 155 nucleotidesDDA3937_RS04310 and DDA3937_RS04315 overlap by 8 nucleotidesDDA3937_RS04315 and DDA3937_RS04320 are separated by 56 nucleotidesDDA3937_RS04320 and DDA3937_RS04325 are separated by 111 nucleotides DDA3937_RS04305: DDA3937_RS04305 - SsrA-binding protein SmpB, at 947,711 to 948,193 _RS04305 DDA3937_RS04310: DDA3937_RS04310 - type II toxin-antitoxin system RatA family toxin, at 948,349 to 948,783 _RS04310 DDA3937_RS04315: DDA3937_RS04315 - RnfH family protein, at 948,776 to 949,069 _RS04315 DDA3937_RS04320: DDA3937_RS04320 - outer membrane protein assembly factor BamE, at 949,126 to 949,470 _RS04320 DDA3937_RS04325: DDA3937_RS04325 - DNA repair protein RecN, at 949,582 to 951,243 _RS04325 Position (kb) 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 947.397 kb on + strandat 947.697 kb on + strandat 947.698 kb on - strandat 947.698 kb on - strandat 947.744 kb on - strandat 948.030 kb on + strand, within DDA3937_RS04305at 948.031 kb on - strand, within DDA3937_RS04305at 948.031 kb on - strand, within DDA3937_RS04305at 948.116 kb on + strand, within DDA3937_RS04305at 948.172 kb on + strandat 948.173 kb on - strandat 948.205 kb on + strandat 948.206 kb on - strandat 948.206 kb on - strandat 948.208 kb on - strandat 948.208 kb on - strandat 948.208 kb on - strandat 948.208 kb on - strandat 948.208 kb on - strandat 948.248 kb on + strandat 948.248 kb on + strandat 948.249 kb on - strandat 948.313 kb on - strandat 948.313 kb on - strandat 948.313 kb on - strandat 948.315 kb on + strandat 948.315 kb on + strandat 948.316 kb on - strandat 948.348 kb on + strandat 948.547 kb on - strand, within DDA3937_RS04310at 948.568 kb on - strand, within DDA3937_RS04310at 948.568 kb on - strand, within DDA3937_RS04310at 948.732 kb on + strand, within DDA3937_RS04310at 948.772 kb on + strandat 948.773 kb on - strandat 948.804 kb on - strandat 948.804 kb on - strandat 948.825 kb on - strand, within DDA3937_RS04315at 948.825 kb on - strand, within DDA3937_RS04315at 948.825 kb on - strand, within DDA3937_RS04315at 948.926 kb on - strand, within DDA3937_RS04315at 949.026 kb on + strand, within DDA3937_RS04315at 949.027 kb on - strand, within DDA3937_RS04315at 949.027 kb on - strand, within DDA3937_RS04315at 949.127 kb on + strandat 949.128 kb on - strandat 949.128 kb on - strandat 949.244 kb on + strand, within DDA3937_RS04320at 949.244 kb on + strand, within DDA3937_RS04320at 949.244 kb on + strand, within DDA3937_RS04320at 949.244 kb on + strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.245 kb on - strand, within DDA3937_RS04320at 949.247 kb on + strand, within DDA3937_RS04320at 949.247 kb on + strand, within DDA3937_RS04320at 949.247 kb on + strand, within DDA3937_RS04320at 949.247 kb on + strand, within DDA3937_RS04320at 949.298 kb on + strand, within DDA3937_RS04320at 949.298 kb on + strand, within DDA3937_RS04320at 949.298 kb on + strand, within DDA3937_RS04320at 949.298 kb on + strand, within DDA3937_RS04320at 949.299 kb on - strand, within DDA3937_RS04320at 949.299 kb on - strand, within DDA3937_RS04320at 949.299 kb on - strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.358 kb on + strand, within DDA3937_RS04320at 949.359 kb on - strand, within DDA3937_RS04320at 949.359 kb on - strand, within DDA3937_RS04320at 949.359 kb on - strand, within DDA3937_RS04320at 949.359 kb on - strand, within DDA3937_RS04320at 949.390 kb on + strand, within DDA3937_RS04320at 949.390 kb on + strand, within DDA3937_RS04320at 949.391 kb on - strand, within DDA3937_RS04320at 949.391 kb on - strand, within DDA3937_RS04320at 949.391 kb on - strand, within DDA3937_RS04320at 949.425 kb on + strand, within DDA3937_RS04320at 949.425 kb on + strand, within DDA3937_RS04320at 949.426 kb on - strand, within DDA3937_RS04320at 949.426 kb on - strand, within DDA3937_RS04320at 949.426 kb on - strand, within DDA3937_RS04320at 949.470 kb on + strandat 949.470 kb on + strandat 949.471 kb on - strandat 949.477 kb on + strandat 949.477 kb on + strandat 949.478 kb on - strandat 949.478 kb on - strandat 949.494 kb on + strandat 949.494 kb on + strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.495 kb on - strandat 949.508 kb on + strandat 949.508 kb on + strandat 949.508 kb on + strandat 949.508 kb on + strandat 949.509 kb on - strandat 949.509 kb on - strandat 949.511 kb on + strandat 949.511 kb on + strandat 949.512 kb on - strandat 949.512 kb on - strandat 949.512 kb on - strandat 949.512 kb on - strandat 949.549 kb on - strandat 949.737 kb on - strandat 949.737 kb on - strandat 949.760 kb on - strand, within DDA3937_RS04325

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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947,397 + +3.2
947,697 + -1.4
947,698 - +0.4
947,698 - -2.3
947,744 - +0.4
948,030 + DDA3937_RS04305 0.66 +0.9
948,031 - DDA3937_RS04305 0.66 -1.7
948,031 - DDA3937_RS04305 0.66 -0.8
948,116 + DDA3937_RS04305 0.84 -1.1
948,172 + -0.4
948,173 - +1.3
948,205 + -1.5
948,206 - -3.0
948,206 - -0.2
948,208 - -0.9
948,208 - -2.7
948,208 - -0.9
948,208 - +0.9
948,208 - -0.4
948,248 + +2.5
948,248 + -2.1
948,249 - +0.0
948,313 - +0.6
948,313 - -0.7
948,313 - -1.1
948,315 + +0.7
948,315 + +1.4
948,316 - +0.6
948,348 + -0.7
948,547 - DDA3937_RS04310 0.46 -0.1
948,568 - DDA3937_RS04310 0.50 -1.9
948,568 - DDA3937_RS04310 0.50 -2.3
948,732 + DDA3937_RS04310 0.88 -0.7
948,772 + -0.8
948,773 - -0.7
948,804 - -0.9
948,804 - +0.3
948,825 - DDA3937_RS04315 0.17 -1.6
948,825 - DDA3937_RS04315 0.17 -1.4
948,825 - DDA3937_RS04315 0.17 -1.7
948,926 - DDA3937_RS04315 0.51 +0.9
949,026 + DDA3937_RS04315 0.85 +0.9
949,027 - DDA3937_RS04315 0.85 -1.9
949,027 - DDA3937_RS04315 0.85 -1.1
949,127 + -1.0
949,128 - +1.6
949,128 - +1.2
949,244 + DDA3937_RS04320 0.34 +0.9
949,244 + DDA3937_RS04320 0.34 -1.1
949,244 + DDA3937_RS04320 0.34 +0.3
949,244 + DDA3937_RS04320 0.34 -1.3
949,245 - DDA3937_RS04320 0.34 +0.3
949,245 - DDA3937_RS04320 0.34 -0.1
949,245 - DDA3937_RS04320 0.34 +0.5
949,245 - DDA3937_RS04320 0.34 +0.9
949,245 - DDA3937_RS04320 0.34 +2.2
949,245 - DDA3937_RS04320 0.34 -1.7
949,245 - DDA3937_RS04320 0.34 -0.7
949,245 - DDA3937_RS04320 0.34 -0.9
949,245 - DDA3937_RS04320 0.34 -1.1
949,247 + DDA3937_RS04320 0.35 +0.9
949,247 + DDA3937_RS04320 0.35 -0.3
949,247 + DDA3937_RS04320 0.35 +1.9
949,247 + DDA3937_RS04320 0.35 +0.3
949,298 + DDA3937_RS04320 0.50 -1.5
949,298 + DDA3937_RS04320 0.50 -2.7
949,298 + DDA3937_RS04320 0.50 -2.1
949,298 + DDA3937_RS04320 0.50 -1.1
949,299 - DDA3937_RS04320 0.50 -1.6
949,299 - DDA3937_RS04320 0.50 -1.5
949,299 - DDA3937_RS04320 0.50 -0.7
949,358 + DDA3937_RS04320 0.67 -0.0
949,358 + DDA3937_RS04320 0.67 -0.7
949,358 + DDA3937_RS04320 0.67 -0.1
949,358 + DDA3937_RS04320 0.67 -1.5
949,358 + DDA3937_RS04320 0.67 -0.5
949,358 + DDA3937_RS04320 0.67 -1.1
949,359 - DDA3937_RS04320 0.68 -1.5
949,359 - DDA3937_RS04320 0.68 -0.5
949,359 - DDA3937_RS04320 0.68 +0.9
949,359 - DDA3937_RS04320 0.68 +1.7
949,390 + DDA3937_RS04320 0.77 +2.1
949,390 + DDA3937_RS04320 0.77 -0.9
949,391 - DDA3937_RS04320 0.77 -0.2
949,391 - DDA3937_RS04320 0.77 +0.4
949,391 - DDA3937_RS04320 0.77 -2.3
949,425 + DDA3937_RS04320 0.87 -0.9
949,425 + DDA3937_RS04320 0.87 -1.4
949,426 - DDA3937_RS04320 0.87 -1.5
949,426 - DDA3937_RS04320 0.87 -1.9
949,426 - DDA3937_RS04320 0.87 -0.1
949,470 + -0.7
949,470 + -1.9
949,471 - -0.9
949,477 + -0.7
949,477 + -0.9
949,478 - -0.2
949,478 - -1.7
949,494 + -1.2
949,494 + -1.1
949,495 - -0.6
949,495 - +0.2
949,495 - -0.4
949,495 - -1.9
949,495 - +0.3
949,495 - +1.9
949,495 - +0.7
949,495 - -0.9
949,495 - -0.5
949,495 - -1.9
949,508 + +0.5
949,508 + -1.7
949,508 + +1.1
949,508 + -0.7
949,509 - -0.4
949,509 - -0.7
949,511 + -0.9
949,511 + -0.4
949,512 - -0.4
949,512 - -1.1
949,512 - -0.1
949,512 - +1.6
949,549 - -0.1
949,737 - -0.9
949,737 - -1.0
949,760 - DDA3937_RS04325 0.11 -0.7

Or see this region's nucleotide sequence