Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04040 and DDA3937_RS04045 overlap by 4 nucleotides DDA3937_RS04045 and DDA3937_RS04050 are separated by 474 nucleotides DDA3937_RS04050 and DDA3937_RS04055 overlap by 4 nucleotides DDA3937_RS04055 and DDA3937_RS21905 overlap by 1 nucleotides
DDA3937_RS04040: DDA3937_RS04040 - type II toxin-antitoxin system RelE/ParE family toxin, at 901,385 to 901,696
_RS04040
DDA3937_RS04045: DDA3937_RS04045 - DNA-damage-inducible protein J, at 901,693 to 901,977
_RS04045
DDA3937_RS04050: DDA3937_RS04050 - AAA family ATPase, at 902,452 to 903,081
_RS04050
DDA3937_RS04055: DDA3937_RS04055 - hypothetical protein, at 903,078 to 903,527
_RS04055
DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039
_RS21905
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 901.473 kb on + strand, within DDA3937_RS04040 at 901.473 kb on + strand, within DDA3937_RS04040 at 901.483 kb on + strand, within DDA3937_RS04040 at 901.664 kb on - strand, within DDA3937_RS04040 at 901.929 kb on + strand at 901.966 kb on + strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.990 kb on + strand at 902.026 kb on + strand at 902.079 kb on + strand at 902.080 kb on - strand at 902.134 kb on + strand at 902.134 kb on + strand at 902.135 kb on - strand at 902.135 kb on - strand at 902.135 kb on - strand at 902.137 kb on + strand at 902.138 kb on - strand at 902.162 kb on + strand at 902.162 kb on + strand at 902.181 kb on + strand at 902.181 kb on + strand at 902.221 kb on + strand at 902.221 kb on + strand at 902.227 kb on + strand at 902.235 kb on + strand at 902.235 kb on + strand at 902.236 kb on - strand at 902.239 kb on + strand at 902.239 kb on + strand at 902.239 kb on + strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.242 kb on - strand at 902.245 kb on + strand at 902.245 kb on + strand at 902.249 kb on + strand at 902.261 kb on - strand at 902.296 kb on - strand at 902.296 kb on - strand at 902.298 kb on - strand at 902.298 kb on - strand at 902.298 kb on - strand at 902.348 kb on + strand at 902.379 kb on - strand at 902.397 kb on + strand at 902.406 kb on + strand at 902.407 kb on - strand at 902.435 kb on - strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.438 kb on + strand at 902.439 kb on - strand at 902.440 kb on + strand at 902.469 kb on + strand at 902.514 kb on + strand at 902.580 kb on + strand, within DDA3937_RS04050 at 902.602 kb on - strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.730 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.781 kb on + strand, within DDA3937_RS04050 at 902.784 kb on - strand, within DDA3937_RS04050 at 902.826 kb on + strand, within DDA3937_RS04050 at 902.829 kb on + strand, within DDA3937_RS04050 at 902.899 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.972 kb on + strand, within DDA3937_RS04050 at 903.040 kb on - strand at 903.040 kb on - strand at 903.553 kb on - strand at 903.579 kb on + strand, within DDA3937_RS21905 at 903.582 kb on - strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.688 kb on - strand, within DDA3937_RS21905 at 903.696 kb on + strand, within DDA3937_RS21905 at 903.697 kb on - strand, within DDA3937_RS21905 at 903.724 kb on + strand, within DDA3937_RS21905 at 903.738 kb on + strand, within DDA3937_RS21905 at 903.751 kb on - strand, within DDA3937_RS21905 at 903.755 kb on - strand, within DDA3937_RS21905 at 903.802 kb on + strand, within DDA3937_RS21905 at 903.828 kb on + strand, within DDA3937_RS21905 at 903.843 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.921 kb on - strand, within DDA3937_RS21905 at 903.925 kb on + strand, within DDA3937_RS21905 at 903.927 kb on + strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.979 kb on - strand, within DDA3937_RS21905 at 904.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 901,473 + DDA3937_RS04040 0.28 +2.3 901,473 + DDA3937_RS04040 0.28 -1.1 901,483 + DDA3937_RS04040 0.31 -0.7 901,664 - DDA3937_RS04040 0.89 -0.8 901,929 + +0.9 901,966 + +1.3 901,967 - -0.1 901,967 - -1.0 901,967 - -0.5 901,967 - -0.5 901,967 - -1.4 901,967 - -0.2 901,967 - +0.5 901,967 - +0.6 901,967 - +0.7 901,990 + +0.5 902,026 + +0.6 902,079 + -1.0 902,080 - +0.5 902,134 + -1.9 902,134 + -0.9 902,135 - +0.0 902,135 - -0.2 902,135 - -2.0 902,137 + -1.4 902,138 - +0.1 902,162 + -0.3 902,162 + +0.0 902,181 + -1.5 902,181 + -0.3 902,221 + -1.7 902,221 + -1.4 902,227 + +0.2 902,235 + -0.3 902,235 + -0.2 902,236 - -0.3 902,239 + -1.6 902,239 + +0.6 902,239 + -0.3 902,240 - -0.3 902,240 - -1.4 902,240 - -0.6 902,240 - -0.4 902,242 - +0.5 902,245 + -0.2 902,245 + +0.3 902,249 + -0.9 902,261 - -0.2 902,296 - -0.1 902,296 - +0.2 902,298 - -2.8 902,298 - -0.6 902,298 - -0.7 902,348 + +0.4 902,379 - -0.3 902,397 + -0.7 902,406 + -1.7 902,407 - +0.6 902,435 - -1.5 902,436 + -0.1 902,436 + -1.1 902,436 + +1.9 902,437 - -0.1 902,437 - +0.4 902,437 - -1.2 902,438 + +0.8 902,439 - -0.8 902,440 + +0.7 902,469 + +0.9 902,514 + +0.3 902,580 + DDA3937_RS04050 0.20 +3.7 902,602 - DDA3937_RS04050 0.24 -0.1 902,622 + DDA3937_RS04050 0.27 +2.0 902,622 + DDA3937_RS04050 0.27 -0.3 902,730 - DDA3937_RS04050 0.44 -0.1 902,773 - DDA3937_RS04050 0.51 -2.6 902,773 - DDA3937_RS04050 0.51 -2.1 902,781 + DDA3937_RS04050 0.52 +0.5 902,784 - DDA3937_RS04050 0.53 -0.3 902,826 + DDA3937_RS04050 0.59 +1.2 902,829 + DDA3937_RS04050 0.60 -1.1 902,899 + DDA3937_RS04050 0.71 -1.3 902,912 + DDA3937_RS04050 0.73 -0.5 902,912 + DDA3937_RS04050 0.73 -0.3 902,912 + DDA3937_RS04050 0.73 +1.3 902,912 + DDA3937_RS04050 0.73 -0.1 902,972 + DDA3937_RS04050 0.83 +1.4 903,040 - -1.4 903,040 - +0.9 903,553 - -0.2 903,579 + DDA3937_RS21905 0.10 -1.3 903,582 - DDA3937_RS21905 0.11 -1.4 903,687 + DDA3937_RS21905 0.31 +1.2 903,687 + DDA3937_RS21905 0.31 -1.0 903,687 + DDA3937_RS21905 0.31 -0.8 903,688 - DDA3937_RS21905 0.31 -0.6 903,696 + DDA3937_RS21905 0.33 +0.9 903,697 - DDA3937_RS21905 0.33 -1.2 903,724 + DDA3937_RS21905 0.38 -0.7 903,738 + DDA3937_RS21905 0.41 -1.2 903,751 - DDA3937_RS21905 0.44 -0.2 903,755 - DDA3937_RS21905 0.44 +0.5 903,802 + DDA3937_RS21905 0.54 -1.4 903,828 + DDA3937_RS21905 0.59 +0.3 903,843 + DDA3937_RS21905 0.62 +2.3 903,885 + DDA3937_RS21905 0.70 +2.1 903,885 + DDA3937_RS21905 0.70 +1.3 903,921 - DDA3937_RS21905 0.77 -1.7 903,925 + DDA3937_RS21905 0.78 -1.1 903,927 + DDA3937_RS21905 0.78 -0.5 903,928 - DDA3937_RS21905 0.78 -0.9 903,928 - DDA3937_RS21905 0.78 +0.5 903,979 - DDA3937_RS21905 0.88 -1.4 904,070 + -0.5
Or see this region's nucleotide sequence