Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03715

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03710 and DDA3937_RS03715 are separated by 16 nucleotidesDDA3937_RS03715 and DDA3937_RS03720 are separated by 17 nucleotides DDA3937_RS03710: DDA3937_RS03710 - sugar ABC transporter ATP-binding protein, at 820,434 to 821,981 _RS03710 DDA3937_RS03715: DDA3937_RS03715 - ABC transporter permease, at 821,998 to 823,032 _RS03715 DDA3937_RS03720: DDA3937_RS03720 - Gfo/Idh/MocA family oxidoreductase, at 823,050 to 824,183 _RS03720 Position (kb) 821 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 821.025 kb on + strand, within DDA3937_RS03710at 821.025 kb on + strand, within DDA3937_RS03710at 821.025 kb on + strand, within DDA3937_RS03710at 821.026 kb on - strand, within DDA3937_RS03710at 821.026 kb on - strand, within DDA3937_RS03710at 821.026 kb on - strand, within DDA3937_RS03710at 821.077 kb on + strand, within DDA3937_RS03710at 821.077 kb on + strandat 821.077 kb on + strand, within DDA3937_RS03710at 821.078 kb on - strand, within DDA3937_RS03710at 821.094 kb on + strand, within DDA3937_RS03710at 821.422 kb on - strand, within DDA3937_RS03710at 821.565 kb on + strand, within DDA3937_RS03710at 821.565 kb on + strand, within DDA3937_RS03710at 821.566 kb on - strand, within DDA3937_RS03710at 821.702 kb on + strand, within DDA3937_RS03710at 821.703 kb on - strand, within DDA3937_RS03710at 821.703 kb on - strand, within DDA3937_RS03710at 821.703 kb on - strand, within DDA3937_RS03710at 821.988 kb on + strandat 821.988 kb on + strandat 821.989 kb on - strandat 821.989 kb on - strandat 821.989 kb on - strandat 821.989 kb on - strandat 821.989 kb on - strandat 821.989 kb on - strandat 821.989 kb on - strandat 822.190 kb on + strand, within DDA3937_RS03715at 822.191 kb on - strand, within DDA3937_RS03715at 822.290 kb on - strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.621 kb on + strand, within DDA3937_RS03715at 822.622 kb on - strand, within DDA3937_RS03715at 822.622 kb on - strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.695 kb on + strand, within DDA3937_RS03715at 822.696 kb on - strand, within DDA3937_RS03715at 822.718 kb on + strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.719 kb on - strand, within DDA3937_RS03715at 822.946 kb on + strandat 822.947 kb on - strandat 822.947 kb on - strandat 822.949 kb on + strandat 822.950 kb on - strandat 822.961 kb on - strandat 823.000 kb on - strandat 823.004 kb on - strandat 823.004 kb on - strandat 823.086 kb on + strandat 823.134 kb on + strandat 823.134 kb on + strandat 823.134 kb on + strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.135 kb on - strandat 823.292 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.482 kb on - strand, within DDA3937_RS03720at 823.539 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.644 kb on + strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.909 kb on - strand, within DDA3937_RS03720

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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821,025 + DDA3937_RS03710 0.38 -1.1
821,025 + DDA3937_RS03710 0.38 -0.7
821,025 + DDA3937_RS03710 0.38 -2.3
821,026 - DDA3937_RS03710 0.38 +0.7
821,026 - DDA3937_RS03710 0.38 -1.5
821,026 - DDA3937_RS03710 0.38 -0.6
821,077 + DDA3937_RS03710 0.42 +0.9
821,077 + +0.5
821,077 + DDA3937_RS03710 0.42 +0.1
821,078 - DDA3937_RS03710 0.42 -1.1
821,094 + DDA3937_RS03710 0.43 -1.7
821,422 - DDA3937_RS03710 0.64 -0.4
821,565 + DDA3937_RS03710 0.73 +0.2
821,565 + DDA3937_RS03710 0.73 +0.9
821,566 - DDA3937_RS03710 0.73 -0.5
821,702 + DDA3937_RS03710 0.82 -0.2
821,703 - DDA3937_RS03710 0.82 -0.9
821,703 - DDA3937_RS03710 0.82 +1.1
821,703 - DDA3937_RS03710 0.82 -0.6
821,988 + +0.0
821,988 + -0.5
821,989 - -1.3
821,989 - -0.4
821,989 - -0.1
821,989 - -0.6
821,989 - -0.6
821,989 - +0.8
821,989 - +0.1
822,190 + DDA3937_RS03715 0.19 -0.0
822,191 - DDA3937_RS03715 0.19 -0.6
822,290 - DDA3937_RS03715 0.28 -0.6
822,621 + DDA3937_RS03715 0.60 -1.4
822,621 + DDA3937_RS03715 0.60 +1.6
822,621 + DDA3937_RS03715 0.60 -2.3
822,621 + DDA3937_RS03715 0.60 +0.5
822,622 - DDA3937_RS03715 0.60 -1.4
822,622 - DDA3937_RS03715 0.60 -1.4
822,695 + DDA3937_RS03715 0.67 -1.1
822,695 + DDA3937_RS03715 0.67 -0.1
822,695 + DDA3937_RS03715 0.67 -1.9
822,696 - DDA3937_RS03715 0.67 -2.1
822,718 + DDA3937_RS03715 0.70 -0.9
822,719 - DDA3937_RS03715 0.70 -0.2
822,719 - DDA3937_RS03715 0.70 +0.2
822,719 - DDA3937_RS03715 0.70 -0.6
822,719 - DDA3937_RS03715 0.70 -0.2
822,946 + +0.3
822,947 - -0.2
822,947 - -3.1
822,949 + -1.6
822,950 - +0.7
822,961 - -0.9
823,000 - +0.5
823,004 - -0.1
823,004 - -1.3
823,086 + -1.1
823,134 + -0.6
823,134 + +0.5
823,134 + -0.2
823,135 - -0.6
823,135 - -0.3
823,135 - +0.4
823,135 - +0.2
823,135 - -0.2
823,135 - +0.5
823,135 - -0.1
823,292 + DDA3937_RS03720 0.21 +0.7
823,443 + DDA3937_RS03720 0.35 +0.2
823,443 + DDA3937_RS03720 0.35 -0.6
823,443 + DDA3937_RS03720 0.35 -0.2
823,443 + DDA3937_RS03720 0.35 -0.9
823,443 + DDA3937_RS03720 0.35 +0.8
823,444 - DDA3937_RS03720 0.35 -0.6
823,444 - DDA3937_RS03720 0.35 -0.0
823,444 - DDA3937_RS03720 0.35 -0.1
823,444 - DDA3937_RS03720 0.35 +1.2
823,444 - DDA3937_RS03720 0.35 +0.2
823,444 - DDA3937_RS03720 0.35 -0.7
823,482 - DDA3937_RS03720 0.38 -0.1
823,539 + DDA3937_RS03720 0.43 -0.8
823,634 + DDA3937_RS03720 0.51 -0.6
823,634 + DDA3937_RS03720 0.51 +0.2
823,644 + DDA3937_RS03720 0.52 +2.3
823,645 - DDA3937_RS03720 0.52 +0.6
823,645 - DDA3937_RS03720 0.52 +1.6
823,669 + DDA3937_RS03720 0.55 +0.7
823,669 + DDA3937_RS03720 0.55 -0.7
823,669 + DDA3937_RS03720 0.55 -0.4
823,842 + DDA3937_RS03720 0.70 -0.3
823,842 + DDA3937_RS03720 0.70 -0.9
823,842 + DDA3937_RS03720 0.70 +0.3
823,842 + DDA3937_RS03720 0.70 +0.7
823,842 + DDA3937_RS03720 0.70 +0.3
823,842 + DDA3937_RS03720 0.70 +0.8
823,842 + DDA3937_RS03720 0.70 -0.7
823,842 + DDA3937_RS03720 0.70 +1.7
823,843 - DDA3937_RS03720 0.70 +0.3
823,843 - DDA3937_RS03720 0.70 -1.2
823,843 - DDA3937_RS03720 0.70 -1.4
823,843 - DDA3937_RS03720 0.70 -0.3
823,843 - DDA3937_RS03720 0.70 -1.2
823,843 - DDA3937_RS03720 0.70 +0.3
823,877 + DDA3937_RS03720 0.73 -0.4
823,877 + DDA3937_RS03720 0.73 +0.3
823,909 - DDA3937_RS03720 0.76 +1.6

Or see this region's nucleotide sequence