Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03005

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03000 and DDA3937_RS03005 are separated by 257 nucleotidesDDA3937_RS03005 and DDA3937_RS03010 are separated by 105 nucleotides DDA3937_RS03000: DDA3937_RS03000 - DMT family transporter, at 662,446 to 663,390 _RS03000 DDA3937_RS03005: DDA3937_RS03005 - Obg family GTPase CgtA, at 663,648 to 664,823 _RS03005 DDA3937_RS03010: DDA3937_RS03010 - serine-type D-Ala-D-Ala carboxypeptidase, at 664,929 to 666,362 _RS03010 Position (kb) 663 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 662.728 kb on + strand, within DDA3937_RS03000at 662.729 kb on - strand, within DDA3937_RS03000at 662.732 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.733 kb on + strand, within DDA3937_RS03000at 662.734 kb on - strand, within DDA3937_RS03000at 662.734 kb on - strand, within DDA3937_RS03000at 662.734 kb on - strand, within DDA3937_RS03000at 662.734 kb on - strand, within DDA3937_RS03000at 662.734 kb on - strandat 662.734 kb on - strand, within DDA3937_RS03000at 662.734 kb on - strand, within DDA3937_RS03000at 662.881 kb on - strand, within DDA3937_RS03000at 662.881 kb on - strand, within DDA3937_RS03000at 662.914 kb on + strand, within DDA3937_RS03000at 662.915 kb on - strand, within DDA3937_RS03000at 662.915 kb on - strand, within DDA3937_RS03000at 662.915 kb on - strand, within DDA3937_RS03000at 662.915 kb on - strand, within DDA3937_RS03000at 662.954 kb on + strand, within DDA3937_RS03000at 662.987 kb on + strand, within DDA3937_RS03000at 663.029 kb on - strand, within DDA3937_RS03000at 663.029 kb on - strand, within DDA3937_RS03000at 663.029 kb on - strand, within DDA3937_RS03000at 663.029 kb on - strand, within DDA3937_RS03000at 663.029 kb on - strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.030 kb on + strand, within DDA3937_RS03000at 663.031 kb on - strand, within DDA3937_RS03000at 663.031 kb on - strand, within DDA3937_RS03000at 663.031 kb on - strand, within DDA3937_RS03000at 663.031 kb on - strand, within DDA3937_RS03000at 663.041 kb on + strand, within DDA3937_RS03000at 663.042 kb on - strand, within DDA3937_RS03000at 663.048 kb on + strand, within DDA3937_RS03000at 663.048 kb on + strand, within DDA3937_RS03000at 663.048 kb on + strand, within DDA3937_RS03000at 663.049 kb on - strand, within DDA3937_RS03000at 663.192 kb on + strand, within DDA3937_RS03000at 663.192 kb on + strand, within DDA3937_RS03000at 663.193 kb on - strand, within DDA3937_RS03000at 663.219 kb on + strand, within DDA3937_RS03000at 663.220 kb on - strand, within DDA3937_RS03000at 663.220 kb on - strand, within DDA3937_RS03000at 663.220 kb on - strand, within DDA3937_RS03000at 663.220 kb on - strand, within DDA3937_RS03000at 663.239 kb on + strand, within DDA3937_RS03000at 663.264 kb on - strand, within DDA3937_RS03000at 663.295 kb on + strand, within DDA3937_RS03000at 663.296 kb on - strandat 663.296 kb on - strandat 663.296 kb on - strandat 663.296 kb on - strandat 663.392 kb on + strandat 663.392 kb on + strandat 663.393 kb on - strandat 663.448 kb on + strandat 663.449 kb on - strandat 663.452 kb on - strandat 663.479 kb on + strandat 663.479 kb on + strandat 663.541 kb on + strandat 663.541 kb on + strandat 663.541 kb on + strandat 663.541 kb on + strandat 663.541 kb on + strandat 663.541 kb on + strandat 663.594 kb on + strandat 663.599 kb on + strandat 663.599 kb on + strandat 664.813 kb on - strandat 664.821 kb on + strandat 664.872 kb on + strandat 664.873 kb on - strandat 664.883 kb on - strandat 664.907 kb on - strandat 664.942 kb on + strandat 664.942 kb on + strandat 664.942 kb on + strandat 664.942 kb on + strandat 664.942 kb on + strandat 664.942 kb on + strandat 664.943 kb on - strandat 664.943 kb on - strandat 664.943 kb on - strandat 664.943 kb on - strandat 664.944 kb on + strandat 664.944 kb on + strandat 664.945 kb on - strandat 664.945 kb on - strandat 664.945 kb on - strandat 664.945 kb on - strandat 664.945 kb on - strandat 664.955 kb on - strandat 664.955 kb on - strandat 665.032 kb on + strandat 665.033 kb on - strandat 665.072 kb on + strandat 665.072 kb on + strandat 665.089 kb on + strand, within DDA3937_RS03010at 665.089 kb on + strand, within DDA3937_RS03010at 665.089 kb on + strand, within DDA3937_RS03010at 665.089 kb on + strand, within DDA3937_RS03010at 665.089 kb on + strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.090 kb on - strand, within DDA3937_RS03010at 665.091 kb on + strand, within DDA3937_RS03010at 665.092 kb on - strand, within DDA3937_RS03010at 665.166 kb on + strand, within DDA3937_RS03010at 665.166 kb on + strand, within DDA3937_RS03010at 665.166 kb on + strand, within DDA3937_RS03010at 665.167 kb on - strand, within DDA3937_RS03010at 665.207 kb on - strand, within DDA3937_RS03010at 665.234 kb on + strand, within DDA3937_RS03010at 665.236 kb on + strand, within DDA3937_RS03010at 665.236 kb on + strand, within DDA3937_RS03010at 665.237 kb on - strand, within DDA3937_RS03010at 665.276 kb on + strand, within DDA3937_RS03010at 665.276 kb on + strand, within DDA3937_RS03010at 665.276 kb on + strand, within DDA3937_RS03010at 665.277 kb on - strand, within DDA3937_RS03010at 665.277 kb on - strand, within DDA3937_RS03010at 665.277 kb on - strand, within DDA3937_RS03010at 665.421 kb on + strand, within DDA3937_RS03010at 665.422 kb on - strand, within DDA3937_RS03010at 665.469 kb on + strand, within DDA3937_RS03010at 665.469 kb on + strand, within DDA3937_RS03010at 665.470 kb on - strand, within DDA3937_RS03010at 665.602 kb on + strand, within DDA3937_RS03010at 665.602 kb on + strand, within DDA3937_RS03010at 665.603 kb on - strand, within DDA3937_RS03010at 665.619 kb on + strand, within DDA3937_RS03010at 665.670 kb on - strand, within DDA3937_RS03010at 665.716 kb on + strand, within DDA3937_RS03010at 665.779 kb on + strand, within DDA3937_RS03010at 665.779 kb on + strand, within DDA3937_RS03010

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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662,728 + DDA3937_RS03000 0.30 +1.1
662,729 - DDA3937_RS03000 0.30 +0.8
662,732 + DDA3937_RS03000 0.30 +0.4
662,733 + DDA3937_RS03000 0.30 -2.4
662,733 + DDA3937_RS03000 0.30 -2.4
662,733 + DDA3937_RS03000 0.30 +0.0
662,733 + DDA3937_RS03000 0.30 -1.3
662,733 + DDA3937_RS03000 0.30 +1.9
662,733 + DDA3937_RS03000 0.30 -0.4
662,734 - DDA3937_RS03000 0.30 +1.9
662,734 - DDA3937_RS03000 0.30 +0.9
662,734 - DDA3937_RS03000 0.30 +1.4
662,734 - DDA3937_RS03000 0.30 -0.2
662,734 - -0.1
662,734 - DDA3937_RS03000 0.30 -1.1
662,734 - DDA3937_RS03000 0.30 +1.4
662,881 - DDA3937_RS03000 0.46 +0.4
662,881 - DDA3937_RS03000 0.46 -0.7
662,914 + DDA3937_RS03000 0.50 +0.4
662,915 - DDA3937_RS03000 0.50 +0.5
662,915 - DDA3937_RS03000 0.50 +0.9
662,915 - DDA3937_RS03000 0.50 +1.1
662,915 - DDA3937_RS03000 0.50 -0.4
662,954 + DDA3937_RS03000 0.54 -0.2
662,987 + DDA3937_RS03000 0.57 -1.4
663,029 - DDA3937_RS03000 0.62 -0.1
663,029 - DDA3937_RS03000 0.62 -1.2
663,029 - DDA3937_RS03000 0.62 +2.7
663,029 - DDA3937_RS03000 0.62 -0.5
663,029 - DDA3937_RS03000 0.62 -0.1
663,030 + DDA3937_RS03000 0.62 -2.3
663,030 + DDA3937_RS03000 0.62 -2.1
663,030 + DDA3937_RS03000 0.62 +2.3
663,030 + DDA3937_RS03000 0.62 +1.4
663,030 + DDA3937_RS03000 0.62 +2.3
663,030 + DDA3937_RS03000 0.62 -1.9
663,031 - DDA3937_RS03000 0.62 +0.9
663,031 - DDA3937_RS03000 0.62 -1.4
663,031 - DDA3937_RS03000 0.62 -1.5
663,031 - DDA3937_RS03000 0.62 -0.1
663,041 + DDA3937_RS03000 0.63 +1.6
663,042 - DDA3937_RS03000 0.63 +0.6
663,048 + DDA3937_RS03000 0.64 -0.8
663,048 + DDA3937_RS03000 0.64 -1.7
663,048 + DDA3937_RS03000 0.64 +0.9
663,049 - DDA3937_RS03000 0.64 -0.8
663,192 + DDA3937_RS03000 0.79 -0.1
663,192 + DDA3937_RS03000 0.79 -0.1
663,193 - DDA3937_RS03000 0.79 +0.3
663,219 + DDA3937_RS03000 0.82 -2.4
663,220 - DDA3937_RS03000 0.82 -0.3
663,220 - DDA3937_RS03000 0.82 -0.4
663,220 - DDA3937_RS03000 0.82 -1.1
663,220 - DDA3937_RS03000 0.82 -0.9
663,239 + DDA3937_RS03000 0.84 +0.1
663,264 - DDA3937_RS03000 0.87 -1.7
663,295 + DDA3937_RS03000 0.90 +0.6
663,296 - -0.7
663,296 - +0.2
663,296 - -1.0
663,296 - -0.3
663,392 + -1.6
663,392 + +0.0
663,393 - -1.4
663,448 + -1.0
663,449 - -0.7
663,452 - -0.4
663,479 + +0.6
663,479 + +0.6
663,541 + -0.1
663,541 + +0.6
663,541 + -2.1
663,541 + -1.4
663,541 + -0.6
663,541 + -0.2
663,594 + -1.4
663,599 + +0.2
663,599 + +0.3
664,813 - -0.1
664,821 + -2.1
664,872 + +1.4
664,873 - -0.6
664,883 - -1.9
664,907 - -0.1
664,942 + -0.0
664,942 + -0.7
664,942 + +0.4
664,942 + -0.5
664,942 + -0.1
664,942 + +1.2
664,943 - +0.2
664,943 - +1.5
664,943 - +0.6
664,943 - -2.6
664,944 + -3.3
664,944 + +4.2
664,945 - -1.1
664,945 - -2.5
664,945 - -0.1
664,945 - -2.0
664,945 - -0.7
664,955 - -0.4
664,955 - +0.8
665,032 + -1.8
665,033 - -1.5
665,072 + +0.5
665,072 + -3.0
665,089 + DDA3937_RS03010 0.11 -0.7
665,089 + DDA3937_RS03010 0.11 +0.5
665,089 + DDA3937_RS03010 0.11 +1.0
665,089 + DDA3937_RS03010 0.11 +0.3
665,089 + DDA3937_RS03010 0.11 -0.7
665,090 - DDA3937_RS03010 0.11 -1.1
665,090 - DDA3937_RS03010 0.11 +0.9
665,090 - DDA3937_RS03010 0.11 -2.3
665,090 - DDA3937_RS03010 0.11 -1.1
665,090 - DDA3937_RS03010 0.11 -0.8
665,090 - DDA3937_RS03010 0.11 +0.3
665,090 - DDA3937_RS03010 0.11 -1.1
665,091 + DDA3937_RS03010 0.11 -0.3
665,092 - DDA3937_RS03010 0.11 +0.8
665,166 + DDA3937_RS03010 0.17 -0.6
665,166 + DDA3937_RS03010 0.17 +0.6
665,166 + DDA3937_RS03010 0.17 -0.6
665,167 - DDA3937_RS03010 0.17 +1.6
665,207 - DDA3937_RS03010 0.19 +0.1
665,234 + DDA3937_RS03010 0.21 -1.1
665,236 + DDA3937_RS03010 0.21 +0.9
665,236 + DDA3937_RS03010 0.21 -0.0
665,237 - DDA3937_RS03010 0.21 -0.4
665,276 + DDA3937_RS03010 0.24 -1.1
665,276 + DDA3937_RS03010 0.24 -0.5
665,276 + DDA3937_RS03010 0.24 +1.1
665,277 - DDA3937_RS03010 0.24 -2.1
665,277 - DDA3937_RS03010 0.24 -0.7
665,277 - DDA3937_RS03010 0.24 -0.6
665,421 + DDA3937_RS03010 0.34 -0.1
665,422 - DDA3937_RS03010 0.34 -1.4
665,469 + DDA3937_RS03010 0.38 -2.8
665,469 + DDA3937_RS03010 0.38 -2.8
665,470 - DDA3937_RS03010 0.38 -0.7
665,602 + DDA3937_RS03010 0.47 -0.4
665,602 + DDA3937_RS03010 0.47 -2.1
665,603 - DDA3937_RS03010 0.47 -0.2
665,619 + DDA3937_RS03010 0.48 -1.6
665,670 - DDA3937_RS03010 0.52 +2.7
665,716 + DDA3937_RS03010 0.55 -1.0
665,779 + DDA3937_RS03010 0.59 -1.4
665,779 + DDA3937_RS03010 0.59 +0.7

Or see this region's nucleotide sequence