Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02505

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotidesDDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454 _RS02500 DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443 _RS02505 DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438 _RS02510 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2 3at 553.516 kb on - strandat 553.516 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.670 kb on + strandat 553.671 kb on - strandat 553.693 kb on + strandat 553.694 kb on - strandat 553.694 kb on - strandat 553.719 kb on + strandat 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 554.046 kb on - strand, within DDA3937_RS02500at 554.226 kb on - strand, within DDA3937_RS02500at 554.228 kb on + strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.338 kb on + strand, within DDA3937_RS02500at 554.339 kb on - strand, within DDA3937_RS02500at 554.436 kb on + strandat 554.436 kb on + strandat 554.437 kb on - strandat 554.450 kb on + strandat 554.479 kb on + strandat 554.479 kb on + strandat 554.700 kb on + strand, within DDA3937_RS02505at 554.761 kb on - strand, within DDA3937_RS02505at 554.820 kb on + strand, within DDA3937_RS02505at 554.820 kb on + strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.884 kb on + strand, within DDA3937_RS02505at 554.949 kb on + strand, within DDA3937_RS02505at 555.045 kb on - strand, within DDA3937_RS02505at 555.045 kb on - strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.085 kb on - strand, within DDA3937_RS02505at 555.101 kb on + strand, within DDA3937_RS02505at 555.123 kb on + strand, within DDA3937_RS02505at 555.124 kb on - strand, within DDA3937_RS02505at 555.124 kb on - strand, within DDA3937_RS02505at 555.346 kb on - strand, within DDA3937_RS02505at 555.360 kb on + strandat 555.458 kb on + strandat 555.480 kb on + strandat 555.480 kb on + strandat 555.480 kb on + strandat 555.480 kb on + strandat 555.480 kb on + strandat 555.480 kb on + strandat 555.481 kb on - strandat 555.481 kb on - strandat 555.481 kb on - strandat 555.481 kb on - strandat 555.481 kb on - strandat 555.483 kb on + strandat 555.484 kb on - strandat 555.484 kb on - strandat 555.913 kb on + strand, within DDA3937_RS02510at 555.914 kb on - strand, within DDA3937_RS02510at 555.944 kb on + strand, within DDA3937_RS02510at 556.044 kb on + strand, within DDA3937_RS02510at 556.436 kb on + strandat 556.437 kb on - strandat 556.441 kb on - strandat 556.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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553,516 - +0.2
553,516 - +2.9
553,525 - -1.4
553,525 - +0.2
553,525 - +0.7
553,525 - -0.3
553,670 + +1.0
553,671 - -0.2
553,693 + -0.4
553,694 - -1.2
553,694 - +2.1
553,719 + -1.0
553,945 + DDA3937_RS02500 0.38 +0.8
553,945 + DDA3937_RS02500 0.38 +0.1
553,945 + DDA3937_RS02500 0.38 -1.6
553,945 + DDA3937_RS02500 0.38 -0.1
553,946 - DDA3937_RS02500 0.38 +1.4
553,946 - DDA3937_RS02500 0.38 +1.5
553,946 - DDA3937_RS02500 0.38 +1.0
553,946 - DDA3937_RS02500 0.38 +0.1
553,946 - DDA3937_RS02500 0.38 +0.1
553,946 - DDA3937_RS02500 0.38 -0.1
553,946 - DDA3937_RS02500 0.38 -0.6
554,046 - DDA3937_RS02500 0.50 -0.8
554,226 - DDA3937_RS02500 0.72 +1.0
554,228 + DDA3937_RS02500 0.72 -0.8
554,229 - DDA3937_RS02500 0.72 -0.6
554,229 - DDA3937_RS02500 0.72 +1.3
554,229 - DDA3937_RS02500 0.72 -1.6
554,229 - DDA3937_RS02500 0.72 -0.0
554,334 + DDA3937_RS02500 0.85 -0.2
554,334 + DDA3937_RS02500 0.85 +1.0
554,334 + DDA3937_RS02500 0.85 -0.5
554,334 + DDA3937_RS02500 0.85 +1.4
554,334 + DDA3937_RS02500 0.85 +0.7
554,335 - DDA3937_RS02500 0.85 -0.6
554,335 - DDA3937_RS02500 0.85 -0.9
554,335 - DDA3937_RS02500 0.85 -1.4
554,335 - DDA3937_RS02500 0.85 -0.4
554,335 - DDA3937_RS02500 0.85 -0.6
554,335 - DDA3937_RS02500 0.85 -0.0
554,335 - DDA3937_RS02500 0.85 +0.2
554,335 - DDA3937_RS02500 0.85 -0.0
554,335 - DDA3937_RS02500 0.85 +1.2
554,335 - DDA3937_RS02500 0.85 +0.5
554,338 + DDA3937_RS02500 0.86 -0.4
554,339 - DDA3937_RS02500 0.86 -1.4
554,436 + -2.0
554,436 + -1.6
554,437 - +0.1
554,450 + -0.2
554,479 + -0.8
554,479 + -0.6
554,700 + DDA3937_RS02505 0.21 +0.1
554,761 - DDA3937_RS02505 0.27 -1.8
554,820 + DDA3937_RS02505 0.34 -0.2
554,820 + DDA3937_RS02505 0.34 +1.6
554,821 - DDA3937_RS02505 0.34 -0.0
554,821 - DDA3937_RS02505 0.34 -1.2
554,821 - DDA3937_RS02505 0.34 -1.0
554,884 + DDA3937_RS02505 0.41 -0.8
554,949 + DDA3937_RS02505 0.47 -1.2
555,045 - DDA3937_RS02505 0.58 -0.6
555,045 - DDA3937_RS02505 0.58 -0.2
555,076 + DDA3937_RS02505 0.61 -0.7
555,076 + DDA3937_RS02505 0.61 +0.6
555,076 + DDA3937_RS02505 0.61 -0.7
555,085 - DDA3937_RS02505 0.62 +0.7
555,101 + DDA3937_RS02505 0.64 -0.0
555,123 + DDA3937_RS02505 0.66 -1.4
555,124 - DDA3937_RS02505 0.66 -1.5
555,124 - DDA3937_RS02505 0.66 -1.1
555,346 - DDA3937_RS02505 0.90 -0.5
555,360 + -0.4
555,458 + -0.8
555,480 + -0.5
555,480 + -1.0
555,480 + +0.3
555,480 + -2.0
555,480 + -0.0
555,480 + -0.6
555,481 - -0.8
555,481 - -0.3
555,481 - -0.6
555,481 - -1.0
555,481 - -0.1
555,483 + -0.6
555,484 - +0.7
555,484 - -0.4
555,913 + DDA3937_RS02510 0.47 -0.6
555,914 - DDA3937_RS02510 0.47 -0.0
555,944 + DDA3937_RS02510 0.50 -1.0
556,044 + DDA3937_RS02510 0.60 +0.4
556,436 + +1.4
556,437 - +0.3
556,441 - +1.4
556,441 - -1.8

Or see this region's nucleotide sequence