Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02470

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02465 and DDA3937_RS02470 are separated by 41 nucleotidesDDA3937_RS02470 and DDA3937_RS02475 are separated by 357 nucleotides DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257 _RS02465 DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063 _RS02470 DDA3937_RS02475: DDA3937_RS02475 - Tar ligand binding domain-containing protein, at 547,421 to 549,139 _RS02475 Position (kb) 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.305 kb on - strandat 545.305 kb on - strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.307 kb on + strandat 545.308 kb on - strandat 545.317 kb on + strandat 545.317 kb on + strandat 545.318 kb on - strandat 545.340 kb on - strandat 545.425 kb on - strandat 545.456 kb on - strandat 545.471 kb on + strandat 545.472 kb on - strandat 545.481 kb on + strandat 545.481 kb on + strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.559 kb on - strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.604 kb on + strandat 545.605 kb on - strandat 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.784 kb on + strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.785 kb on - strand, within DDA3937_RS02465at 545.832 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.952 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 545.986 kb on - strand, within DDA3937_RS02465at 546.026 kb on + strand, within DDA3937_RS02465at 546.027 kb on - strand, within DDA3937_RS02465at 546.064 kb on - strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.075 kb on + strand, within DDA3937_RS02465at 546.076 kb on - strand, within DDA3937_RS02465at 546.213 kb on + strandat 546.213 kb on + strandat 546.214 kb on - strandat 546.214 kb on - strandat 546.214 kb on - strandat 546.321 kb on + strandat 546.321 kb on + strandat 546.550 kb on + strand, within DDA3937_RS02470at 546.746 kb on + strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.747 kb on - strand, within DDA3937_RS02470at 546.776 kb on + strandat 546.776 kb on + strand, within DDA3937_RS02470at 546.776 kb on + strand, within DDA3937_RS02470at 546.776 kb on + strand, within DDA3937_RS02470at 546.777 kb on - strand, within DDA3937_RS02470at 546.833 kb on - strand, within DDA3937_RS02470at 546.833 kb on - strand, within DDA3937_RS02470at 546.907 kb on + strand, within DDA3937_RS02470at 546.908 kb on - strand, within DDA3937_RS02470at 547.007 kb on + strandat 547.058 kb on - strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.061 kb on + strandat 547.062 kb on - strandat 547.062 kb on - strandat 547.062 kb on - strandat 547.101 kb on + strandat 547.101 kb on + strandat 547.102 kb on - strandat 547.144 kb on + strandat 547.144 kb on + strandat 547.145 kb on - strandat 547.147 kb on + strandat 547.148 kb on - strandat 547.167 kb on - strandat 547.167 kb on - strandat 547.213 kb on - strandat 547.229 kb on - strandat 547.331 kb on - strandat 547.331 kb on - strandat 547.365 kb on + strandat 547.366 kb on - strandat 547.366 kb on - strandat 547.382 kb on + strandat 547.408 kb on - strandat 547.426 kb on + strandat 547.427 kb on - strandat 547.427 kb on - strandat 547.427 kb on - strandat 547.427 kb on - strandat 547.641 kb on + strand, within DDA3937_RS02475at 547.641 kb on + strand, within DDA3937_RS02475at 547.641 kb on + strand, within DDA3937_RS02475at 547.641 kb on + strand, within DDA3937_RS02475at 547.642 kb on - strand, within DDA3937_RS02475at 547.642 kb on - strand, within DDA3937_RS02475at 547.642 kb on - strand, within DDA3937_RS02475at 547.642 kb on - strand, within DDA3937_RS02475at 547.645 kb on + strand, within DDA3937_RS02475at 547.646 kb on - strand, within DDA3937_RS02475at 547.717 kb on + strand, within DDA3937_RS02475at 547.821 kb on + strand, within DDA3937_RS02475at 547.821 kb on + strand, within DDA3937_RS02475at 547.821 kb on + strand, within DDA3937_RS02475at 547.821 kb on + strand, within DDA3937_RS02475at 547.821 kb on + strand, within DDA3937_RS02475at 547.822 kb on - strand, within DDA3937_RS02475at 547.822 kb on - strand, within DDA3937_RS02475at 547.832 kb on + strand, within DDA3937_RS02475at 547.833 kb on - strand, within DDA3937_RS02475at 547.841 kb on + strand, within DDA3937_RS02475at 547.841 kb on + strand, within DDA3937_RS02475at 547.842 kb on - strand, within DDA3937_RS02475at 547.842 kb on - strand, within DDA3937_RS02475at 547.931 kb on - strand, within DDA3937_RS02475at 547.931 kb on - strand, within DDA3937_RS02475

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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545,305 - +0.1
545,305 - -0.3
545,307 + +0.4
545,307 + +0.1
545,307 + +0.2
545,307 + +2.2
545,308 - -1.7
545,317 + +1.4
545,317 + +1.1
545,318 - -0.3
545,340 - +0.1
545,425 - -0.6
545,456 - -0.6
545,471 + +1.8
545,472 - -0.2
545,481 + +0.1
545,481 + +0.3
545,482 - -2.0
545,482 - -1.0
545,559 - -2.2
545,604 + +0.3
545,604 + -1.6
545,604 + -2.5
545,605 - +0.2
545,784 + DDA3937_RS02465 0.34 +0.4
545,784 + DDA3937_RS02465 0.34 -1.2
545,784 + DDA3937_RS02465 0.34 +0.3
545,784 + DDA3937_RS02465 0.34 -0.0
545,784 + DDA3937_RS02465 0.34 -2.2
545,784 + DDA3937_RS02465 0.34 +0.7
545,784 + DDA3937_RS02465 0.34 -0.8
545,785 - DDA3937_RS02465 0.34 -2.2
545,785 - DDA3937_RS02465 0.34 -0.4
545,785 - DDA3937_RS02465 0.34 -0.4
545,832 - DDA3937_RS02465 0.41 -0.4
545,952 - DDA3937_RS02465 0.57 -1.7
545,952 - DDA3937_RS02465 0.57 -1.7
545,986 - DDA3937_RS02465 0.62 -0.0
545,986 - DDA3937_RS02465 0.62 +0.6
546,026 + DDA3937_RS02465 0.68 -0.6
546,027 - DDA3937_RS02465 0.68 -0.8
546,064 - DDA3937_RS02465 0.73 -1.1
546,075 + DDA3937_RS02465 0.75 -0.9
546,075 + DDA3937_RS02465 0.75 +1.6
546,075 + DDA3937_RS02465 0.75 -0.4
546,076 - DDA3937_RS02465 0.75 -0.4
546,213 + -0.4
546,213 + -2.6
546,214 - -1.7
546,214 - -0.1
546,214 - -1.8
546,321 + +0.3
546,321 + +0.6
546,550 + DDA3937_RS02470 0.33 +0.8
546,746 + DDA3937_RS02470 0.58 +1.0
546,747 - DDA3937_RS02470 0.59 +0.8
546,747 - DDA3937_RS02470 0.59 -1.0
546,747 - DDA3937_RS02470 0.59 -1.3
546,747 - DDA3937_RS02470 0.59 +1.3
546,747 - DDA3937_RS02470 0.59 -0.5
546,747 - DDA3937_RS02470 0.59 -1.0
546,747 - DDA3937_RS02470 0.59 -1.0
546,776 + +1.0
546,776 + DDA3937_RS02470 0.62 -0.1
546,776 + DDA3937_RS02470 0.62 -0.9
546,776 + DDA3937_RS02470 0.62 +1.0
546,777 - DDA3937_RS02470 0.62 -1.4
546,833 - DDA3937_RS02470 0.70 -2.6
546,833 - DDA3937_RS02470 0.70 +0.2
546,907 + DDA3937_RS02470 0.79 -0.0
546,908 - DDA3937_RS02470 0.80 +0.8
547,007 + +2.7
547,058 - +0.7
547,061 + -0.9
547,061 + -2.5
547,061 + -2.4
547,061 + +1.1
547,062 - +1.2
547,062 - +1.0
547,062 - -1.8
547,101 + -0.4
547,101 + +1.0
547,102 - +0.1
547,144 + -1.0
547,144 + -0.2
547,145 - -0.5
547,147 + -1.1
547,148 - +0.0
547,167 - -1.4
547,167 - +1.1
547,213 - +0.2
547,229 - -0.3
547,331 - +0.4
547,331 - -0.6
547,365 + -1.1
547,366 - +0.3
547,366 - -0.6
547,382 + +0.2
547,408 - +2.2
547,426 + +0.3
547,427 - +0.7
547,427 - +1.2
547,427 - +1.0
547,427 - -0.0
547,641 + DDA3937_RS02475 0.13 -2.8
547,641 + DDA3937_RS02475 0.13 -1.0
547,641 + DDA3937_RS02475 0.13 +1.1
547,641 + DDA3937_RS02475 0.13 +0.2
547,642 - DDA3937_RS02475 0.13 +2.1
547,642 - DDA3937_RS02475 0.13 -1.5
547,642 - DDA3937_RS02475 0.13 -0.0
547,642 - DDA3937_RS02475 0.13 -0.1
547,645 + DDA3937_RS02475 0.13 +0.6
547,646 - DDA3937_RS02475 0.13 +2.0
547,717 + DDA3937_RS02475 0.17 -0.0
547,821 + DDA3937_RS02475 0.23 -0.4
547,821 + DDA3937_RS02475 0.23 -0.1
547,821 + DDA3937_RS02475 0.23 +1.1
547,821 + DDA3937_RS02475 0.23 +0.3
547,821 + DDA3937_RS02475 0.23 -1.0
547,822 - DDA3937_RS02475 0.23 -0.2
547,822 - DDA3937_RS02475 0.23 -0.6
547,832 + DDA3937_RS02475 0.24 +1.0
547,833 - DDA3937_RS02475 0.24 -2.2
547,841 + DDA3937_RS02475 0.24 -1.4
547,841 + DDA3937_RS02475 0.24 +1.4
547,842 - DDA3937_RS02475 0.24 +1.0
547,842 - DDA3937_RS02475 0.24 +0.6
547,931 - DDA3937_RS02475 0.30 -0.4
547,931 - DDA3937_RS02475 0.30 -0.6

Or see this region's nucleotide sequence