Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01175

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01165 and DDA3937_RS01170 are separated by 1 nucleotidesDDA3937_RS01170 and DDA3937_RS01175 overlap by 1 nucleotidesDDA3937_RS01175 and DDA3937_RS01180 are separated by 431 nucleotidesDDA3937_RS01180 and DDA3937_RS01185 are separated by 103 nucleotides DDA3937_RS01165: DDA3937_RS01165 - HesA/MoeB/ThiF family protein, at 266,251 to 267,000 _RS01165 DDA3937_RS01170: DDA3937_RS01170 - thiamine phosphate synthase, at 267,002 to 267,637 _RS01170 DDA3937_RS01175: DDA3937_RS01175 - phosphomethylpyrimidine synthase ThiC, at 267,637 to 269,508 _RS01175 DDA3937_RS01180: DDA3937_RS01180 - Rsd/AlgQ family anti-sigma factor, at 269,940 to 270,389 _RS01180 DDA3937_RS01185: DDA3937_RS01185 - NAD(+) diphosphatase, at 270,493 to 271,266 _RS01185 Position (kb) 267 268 269 270Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 266.773 kb on - strand, within DDA3937_RS01165at 266.861 kb on + strand, within DDA3937_RS01165at 266.861 kb on + strand, within DDA3937_RS01165at 266.862 kb on - strand, within DDA3937_RS01165at 266.862 kb on - strand, within DDA3937_RS01165at 266.920 kb on + strand, within DDA3937_RS01165at 266.920 kb on + strand, within DDA3937_RS01165at 266.921 kb on - strand, within DDA3937_RS01165at 266.973 kb on - strandat 266.979 kb on + strandat 266.980 kb on - strandat 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.268 kb on - strand, within DDA3937_RS01170at 267.268 kb on - strand, within DDA3937_RS01170at 267.386 kb on + strand, within DDA3937_RS01170at 267.386 kb on + strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.393 kb on - strand, within DDA3937_RS01170at 267.400 kb on - strand, within DDA3937_RS01170at 267.400 kb on - strand, within DDA3937_RS01170at 267.430 kb on - strand, within DDA3937_RS01170at 267.674 kb on + strandat 267.765 kb on - strandat 268.013 kb on + strand, within DDA3937_RS01175at 268.014 kb on - strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.045 kb on - strand, within DDA3937_RS01175at 268.045 kb on - strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.080 kb on - strand, within DDA3937_RS01175at 268.080 kb on - strand, within DDA3937_RS01175at 268.177 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.286 kb on + strand, within DDA3937_RS01175at 268.286 kb on + strand, within DDA3937_RS01175at 268.414 kb on - strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175at 268.673 kb on + strand, within DDA3937_RS01175at 268.673 kb on + strand, within DDA3937_RS01175at 268.673 kb on + strand, within DDA3937_RS01175at 268.674 kb on - strand, within DDA3937_RS01175at 268.674 kb on - strand, within DDA3937_RS01175at 268.674 kb on - strand, within DDA3937_RS01175at 268.738 kb on - strand, within DDA3937_RS01175at 268.738 kb on - strand, within DDA3937_RS01175at 268.739 kb on + strand, within DDA3937_RS01175at 268.739 kb on + strand, within DDA3937_RS01175at 268.739 kb on + strand, within DDA3937_RS01175at 268.739 kb on + strand, within DDA3937_RS01175at 268.740 kb on - strand, within DDA3937_RS01175at 268.740 kb on - strand, within DDA3937_RS01175at 268.839 kb on + strand, within DDA3937_RS01175at 268.840 kb on - strand, within DDA3937_RS01175at 269.109 kb on - strand, within DDA3937_RS01175at 269.211 kb on + strand, within DDA3937_RS01175at 269.234 kb on - strand, within DDA3937_RS01175at 269.296 kb on + strand, within DDA3937_RS01175at 269.297 kb on - strand, within DDA3937_RS01175at 269.342 kb on + strandat 269.342 kb on + strandat 269.409 kb on + strandat 269.410 kb on - strandat 269.462 kb on + strandat 269.463 kb on - strandat 269.616 kb on + strandat 269.616 kb on + strandat 269.617 kb on - strandat 269.617 kb on - strandat 269.623 kb on - strandat 269.641 kb on - strandat 269.676 kb on + strandat 269.769 kb on + strandat 269.769 kb on + strandat 269.769 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.771 kb on + strandat 269.772 kb on - strandat 269.772 kb on - strandat 269.772 kb on - strandat 269.772 kb on - strandat 269.772 kb on - strandat 269.775 kb on + strandat 269.775 kb on + strandat 269.775 kb on + strandat 269.776 kb on - strandat 269.776 kb on - strandat 269.776 kb on - strandat 269.852 kb on + strandat 269.902 kb on + strandat 269.903 kb on - strandat 269.918 kb on + strandat 269.918 kb on + strandat 269.919 kb on - strandat 269.919 kb on - strandat 270.076 kb on + strand, within DDA3937_RS01180at 270.076 kb on + strand, within DDA3937_RS01180at 270.076 kb on + strand, within DDA3937_RS01180at 270.077 kb on - strand, within DDA3937_RS01180at 270.077 kb on - strand, within DDA3937_RS01180at 270.080 kb on + strand, within DDA3937_RS01180at 270.184 kb on + strand, within DDA3937_RS01180at 270.184 kb on + strand, within DDA3937_RS01180at 270.184 kb on + strand, within DDA3937_RS01180at 270.184 kb on + strand, within DDA3937_RS01180at 270.185 kb on - strand, within DDA3937_RS01180at 270.211 kb on + strand, within DDA3937_RS01180at 270.211 kb on + strandat 270.211 kb on + strand, within DDA3937_RS01180at 270.211 kb on + strand, within DDA3937_RS01180at 270.211 kb on + strand, within DDA3937_RS01180at 270.211 kb on + strand, within DDA3937_RS01180at 270.212 kb on - strand, within DDA3937_RS01180at 270.259 kb on - strand, within DDA3937_RS01180at 270.289 kb on + strand, within DDA3937_RS01180at 270.289 kb on + strand, within DDA3937_RS01180at 270.289 kb on + strand, within DDA3937_RS01180at 270.289 kb on + strand, within DDA3937_RS01180at 270.290 kb on - strand, within DDA3937_RS01180at 270.290 kb on - strand, within DDA3937_RS01180at 270.292 kb on + strand, within DDA3937_RS01180at 270.292 kb on + strand, within DDA3937_RS01180at 270.292 kb on + strand, within DDA3937_RS01180at 270.292 kb on + strand, within DDA3937_RS01180at 270.292 kb on + strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.293 kb on - strand, within DDA3937_RS01180at 270.343 kb on + strand, within DDA3937_RS01180at 270.343 kb on + strand, within DDA3937_RS01180at 270.344 kb on - strand, within DDA3937_RS01180at 270.344 kb on - strand, within DDA3937_RS01180at 270.344 kb on - strand, within DDA3937_RS01180at 270.344 kb on - strand, within DDA3937_RS01180at 270.375 kb on + strandat 270.375 kb on + strandat 270.376 kb on - strandat 270.409 kb on + strandat 270.409 kb on + strandat 270.409 kb on + strandat 270.409 kb on + strandat 270.430 kb on + strandat 270.430 kb on + strandat 270.431 kb on - strandat 270.431 kb on - strandat 270.436 kb on + strandat 270.437 kb on - strandat 270.442 kb on + strandat 270.448 kb on + strandat 270.448 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.455 kb on - strandat 270.474 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
266,773 - DDA3937_RS01165 0.70 -1.7
266,861 + DDA3937_RS01165 0.81 +0.3
266,861 + DDA3937_RS01165 0.81 -1.7
266,862 - DDA3937_RS01165 0.81 -2.5
266,862 - DDA3937_RS01165 0.81 -2.2
266,920 + DDA3937_RS01165 0.89 -0.7
266,920 + DDA3937_RS01165 0.89 -0.5
266,921 - DDA3937_RS01165 0.89 -1.2
266,973 - -1.0
266,979 + -0.9
266,980 - -0.9
267,250 + DDA3937_RS01170 0.39 -1.8
267,250 + DDA3937_RS01170 0.39 -2.3
267,250 + DDA3937_RS01170 0.39 -1.4
267,250 + DDA3937_RS01170 0.39 -0.7
267,267 + DDA3937_RS01170 0.42 -2.6
267,267 + DDA3937_RS01170 0.42 -4.2
267,267 + DDA3937_RS01170 0.42 -2.8
267,267 + DDA3937_RS01170 0.42 -2.6
267,268 - DDA3937_RS01170 0.42 -1.5
267,268 - DDA3937_RS01170 0.42 -2.0
267,386 + DDA3937_RS01170 0.60 -2.5
267,386 + DDA3937_RS01170 0.60 -0.9
267,387 - DDA3937_RS01170 0.61 -0.9
267,387 - DDA3937_RS01170 0.61 +0.4
267,387 - DDA3937_RS01170 0.61 -1.2
267,393 - DDA3937_RS01170 0.61 -1.1
267,400 - DDA3937_RS01170 0.63 -1.9
267,400 - DDA3937_RS01170 0.63 -0.9
267,430 - DDA3937_RS01170 0.67 -3.1
267,674 + -1.1
267,765 - -3.4
268,013 + DDA3937_RS01175 0.20 -3.4
268,014 - DDA3937_RS01175 0.20 +1.2
268,044 + DDA3937_RS01175 0.22 -3.0
268,044 + DDA3937_RS01175 0.22 -2.1
268,044 + DDA3937_RS01175 0.22 -2.8
268,045 - DDA3937_RS01175 0.22 -1.2
268,045 - DDA3937_RS01175 0.22 -2.9
268,079 + DDA3937_RS01175 0.24 -1.0
268,079 + DDA3937_RS01175 0.24 -0.8
268,079 + DDA3937_RS01175 0.24 -2.0
268,080 - DDA3937_RS01175 0.24 -1.9
268,080 - DDA3937_RS01175 0.24 +0.7
268,177 + DDA3937_RS01175 0.29 -3.6
268,279 + DDA3937_RS01175 0.34 -2.5
268,279 + DDA3937_RS01175 0.34 -1.3
268,279 + DDA3937_RS01175 0.34 -1.5
268,279 + DDA3937_RS01175 0.34 -1.4
268,279 + DDA3937_RS01175 0.34 -3.1
268,279 + DDA3937_RS01175 0.34 -3.8
268,279 + DDA3937_RS01175 0.34 -1.1
268,280 - DDA3937_RS01175 0.34 -0.5
268,280 - DDA3937_RS01175 0.34 -2.5
268,280 - DDA3937_RS01175 0.34 -0.6
268,280 - DDA3937_RS01175 0.34 +1.1
268,280 - DDA3937_RS01175 0.34 -2.1
268,280 - DDA3937_RS01175 0.34 +0.1
268,280 - DDA3937_RS01175 0.34 -0.9
268,286 + DDA3937_RS01175 0.35 -1.7
268,286 + DDA3937_RS01175 0.35 -2.8
268,414 - DDA3937_RS01175 0.42 -0.5
268,577 + DDA3937_RS01175 0.50 -0.9
268,577 + DDA3937_RS01175 0.50 -3.0
268,577 + DDA3937_RS01175 0.50 -0.5
268,673 + DDA3937_RS01175 0.55 -3.5
268,673 + DDA3937_RS01175 0.55 -0.3
268,673 + DDA3937_RS01175 0.55 -2.6
268,674 - DDA3937_RS01175 0.55 -4.7
268,674 - DDA3937_RS01175 0.55 -1.6
268,674 - DDA3937_RS01175 0.55 -1.5
268,738 - DDA3937_RS01175 0.59 -2.1
268,738 - DDA3937_RS01175 0.59 -0.8
268,739 + DDA3937_RS01175 0.59 -0.9
268,739 + DDA3937_RS01175 0.59 -1.4
268,739 + DDA3937_RS01175 0.59 -3.3
268,739 + DDA3937_RS01175 0.59 -3.4
268,740 - DDA3937_RS01175 0.59 -2.3
268,740 - DDA3937_RS01175 0.59 -2.9
268,839 + DDA3937_RS01175 0.64 -2.8
268,840 - DDA3937_RS01175 0.64 -0.9
269,109 - DDA3937_RS01175 0.79 -2.3
269,211 + DDA3937_RS01175 0.84 -2.8
269,234 - DDA3937_RS01175 0.85 -2.0
269,296 + DDA3937_RS01175 0.89 -3.1
269,297 - DDA3937_RS01175 0.89 -1.9
269,342 + -1.8
269,342 + -2.8
269,409 + -1.7
269,410 - +0.1
269,462 + -1.5
269,463 - -1.8
269,616 + -1.2
269,616 + -2.2
269,617 - -1.7
269,617 - -0.2
269,623 - -1.5
269,641 - +1.1
269,676 + -3.0
269,769 + +1.1
269,769 + -3.0
269,769 + -1.9
269,771 + -1.9
269,771 + -3.1
269,771 + -2.8
269,771 + -0.7
269,771 + -1.0
269,771 + -2.8
269,771 + -2.2
269,772 - +1.7
269,772 - -1.8
269,772 - -1.5
269,772 - -1.2
269,772 - -0.6
269,775 + -0.6
269,775 + -2.0
269,775 + -1.6
269,776 - -1.2
269,776 - -2.5
269,776 - -3.6
269,852 + -1.5
269,902 + -2.6
269,903 - +0.9
269,918 + -2.1
269,918 + -0.7
269,919 - +0.1
269,919 - -0.3
270,076 + DDA3937_RS01180 0.30 +0.8
270,076 + DDA3937_RS01180 0.30 +0.5
270,076 + DDA3937_RS01180 0.30 +1.4
270,077 - DDA3937_RS01180 0.30 -1.7
270,077 - DDA3937_RS01180 0.30 -0.5
270,080 + DDA3937_RS01180 0.31 -2.8
270,184 + DDA3937_RS01180 0.54 -0.8
270,184 + DDA3937_RS01180 0.54 +1.6
270,184 + DDA3937_RS01180 0.54 -0.5
270,184 + DDA3937_RS01180 0.54 +0.0
270,185 - DDA3937_RS01180 0.54 -1.3
270,211 + DDA3937_RS01180 0.60 -1.4
270,211 + +2.1
270,211 + DDA3937_RS01180 0.60 +2.0
270,211 + DDA3937_RS01180 0.60 -1.4
270,211 + DDA3937_RS01180 0.60 -0.9
270,211 + DDA3937_RS01180 0.60 -0.2
270,212 - DDA3937_RS01180 0.60 +0.9
270,259 - DDA3937_RS01180 0.71 -1.2
270,289 + DDA3937_RS01180 0.78 +1.1
270,289 + DDA3937_RS01180 0.78 +0.1
270,289 + DDA3937_RS01180 0.78 +0.4
270,289 + DDA3937_RS01180 0.78 -0.1
270,290 - DDA3937_RS01180 0.78 -0.5
270,290 - DDA3937_RS01180 0.78 -0.1
270,292 + DDA3937_RS01180 0.78 +1.1
270,292 + DDA3937_RS01180 0.78 -1.7
270,292 + DDA3937_RS01180 0.78 -1.2
270,292 + DDA3937_RS01180 0.78 -1.3
270,292 + DDA3937_RS01180 0.78 +0.4
270,293 - DDA3937_RS01180 0.78 +0.3
270,293 - DDA3937_RS01180 0.78 -0.8
270,293 - DDA3937_RS01180 0.78 +0.6
270,293 - DDA3937_RS01180 0.78 +1.1
270,293 - DDA3937_RS01180 0.78 -0.2
270,293 - DDA3937_RS01180 0.78 -0.5
270,293 - DDA3937_RS01180 0.78 -0.6
270,343 + DDA3937_RS01180 0.90 +1.0
270,343 + DDA3937_RS01180 0.90 +2.6
270,344 - DDA3937_RS01180 0.90 -1.6
270,344 - DDA3937_RS01180 0.90 -0.9
270,344 - DDA3937_RS01180 0.90 +0.5
270,344 - DDA3937_RS01180 0.90 -0.8
270,375 + -1.7
270,375 + -1.2
270,376 - -0.4
270,409 + -0.0
270,409 + -0.2
270,409 + +1.0
270,409 + +3.1
270,430 + -0.5
270,430 + -0.1
270,431 - +0.3
270,431 - -0.2
270,436 + -0.6
270,437 - -0.9
270,442 + -1.2
270,448 + -0.2
270,448 + -0.9
270,454 + -2.7
270,454 + -0.9
270,454 + +1.5
270,454 + +0.1
270,455 - -0.6
270,474 - -1.2

Or see this region's nucleotide sequence