Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01170

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01155 and DDA3937_RS01160 are separated by 1 nucleotidesDDA3937_RS01160 and DDA3937_RS01165 overlap by 4 nucleotidesDDA3937_RS01165 and DDA3937_RS01170 are separated by 1 nucleotidesDDA3937_RS01170 and DDA3937_RS01175 overlap by 1 nucleotides DDA3937_RS01155: DDA3937_RS01155 - thiazole synthase, at 265,273 to 266,052 _RS01155 DDA3937_RS01160: DDA3937_RS01160 - sulfur carrier protein ThiS, at 266,054 to 266,254 _RS01160 DDA3937_RS01165: DDA3937_RS01165 - HesA/MoeB/ThiF family protein, at 266,251 to 267,000 _RS01165 DDA3937_RS01170: DDA3937_RS01170 - thiamine phosphate synthase, at 267,002 to 267,637 _RS01170 DDA3937_RS01175: DDA3937_RS01175 - phosphomethylpyrimidine synthase ThiC, at 267,637 to 269,508 _RS01175 Position (kb) 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 266.014 kb on + strandat 266.025 kb on + strandat 266.026 kb on - strandat 266.026 kb on - strandat 266.026 kb on - strandat 266.363 kb on - strand, within DDA3937_RS01165at 266.489 kb on + strand, within DDA3937_RS01165at 266.489 kb on + strand, within DDA3937_RS01165at 266.490 kb on - strand, within DDA3937_RS01165at 266.490 kb on - strand, within DDA3937_RS01165at 266.490 kb on - strand, within DDA3937_RS01165at 266.505 kb on - strand, within DDA3937_RS01165at 266.773 kb on - strand, within DDA3937_RS01165at 266.861 kb on + strand, within DDA3937_RS01165at 266.861 kb on + strand, within DDA3937_RS01165at 266.862 kb on - strand, within DDA3937_RS01165at 266.862 kb on - strand, within DDA3937_RS01165at 266.920 kb on + strand, within DDA3937_RS01165at 266.920 kb on + strand, within DDA3937_RS01165at 266.921 kb on - strand, within DDA3937_RS01165at 266.973 kb on - strandat 266.979 kb on + strandat 266.980 kb on - strandat 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.250 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.267 kb on + strand, within DDA3937_RS01170at 267.268 kb on - strand, within DDA3937_RS01170at 267.268 kb on - strand, within DDA3937_RS01170at 267.386 kb on + strand, within DDA3937_RS01170at 267.386 kb on + strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.387 kb on - strand, within DDA3937_RS01170at 267.393 kb on - strand, within DDA3937_RS01170at 267.400 kb on - strand, within DDA3937_RS01170at 267.400 kb on - strand, within DDA3937_RS01170at 267.430 kb on - strand, within DDA3937_RS01170at 267.674 kb on + strandat 267.765 kb on - strandat 268.013 kb on + strand, within DDA3937_RS01175at 268.014 kb on - strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.044 kb on + strand, within DDA3937_RS01175at 268.045 kb on - strand, within DDA3937_RS01175at 268.045 kb on - strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.079 kb on + strand, within DDA3937_RS01175at 268.080 kb on - strand, within DDA3937_RS01175at 268.080 kb on - strand, within DDA3937_RS01175at 268.177 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.279 kb on + strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.280 kb on - strand, within DDA3937_RS01175at 268.286 kb on + strand, within DDA3937_RS01175at 268.286 kb on + strand, within DDA3937_RS01175at 268.414 kb on - strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175at 268.577 kb on + strand, within DDA3937_RS01175

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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266,014 + -2.1
266,025 + -1.8
266,026 - +1.0
266,026 - -1.3
266,026 - -0.5
266,363 - DDA3937_RS01165 0.15 -0.5
266,489 + DDA3937_RS01165 0.32 -0.7
266,489 + DDA3937_RS01165 0.32 -2.7
266,490 - DDA3937_RS01165 0.32 +0.1
266,490 - DDA3937_RS01165 0.32 -0.2
266,490 - DDA3937_RS01165 0.32 -1.5
266,505 - DDA3937_RS01165 0.34 -2.4
266,773 - DDA3937_RS01165 0.70 -1.7
266,861 + DDA3937_RS01165 0.81 +0.3
266,861 + DDA3937_RS01165 0.81 -1.7
266,862 - DDA3937_RS01165 0.81 -2.5
266,862 - DDA3937_RS01165 0.81 -2.2
266,920 + DDA3937_RS01165 0.89 -0.7
266,920 + DDA3937_RS01165 0.89 -0.5
266,921 - DDA3937_RS01165 0.89 -1.2
266,973 - -1.0
266,979 + -0.9
266,980 - -0.9
267,250 + DDA3937_RS01170 0.39 -1.8
267,250 + DDA3937_RS01170 0.39 -2.3
267,250 + DDA3937_RS01170 0.39 -1.4
267,250 + DDA3937_RS01170 0.39 -0.7
267,267 + DDA3937_RS01170 0.42 -2.6
267,267 + DDA3937_RS01170 0.42 -4.2
267,267 + DDA3937_RS01170 0.42 -2.8
267,267 + DDA3937_RS01170 0.42 -2.6
267,268 - DDA3937_RS01170 0.42 -1.5
267,268 - DDA3937_RS01170 0.42 -2.0
267,386 + DDA3937_RS01170 0.60 -2.5
267,386 + DDA3937_RS01170 0.60 -0.9
267,387 - DDA3937_RS01170 0.61 -0.9
267,387 - DDA3937_RS01170 0.61 +0.4
267,387 - DDA3937_RS01170 0.61 -1.2
267,393 - DDA3937_RS01170 0.61 -1.1
267,400 - DDA3937_RS01170 0.63 -1.9
267,400 - DDA3937_RS01170 0.63 -0.9
267,430 - DDA3937_RS01170 0.67 -3.1
267,674 + -1.1
267,765 - -3.4
268,013 + DDA3937_RS01175 0.20 -3.4
268,014 - DDA3937_RS01175 0.20 +1.2
268,044 + DDA3937_RS01175 0.22 -3.0
268,044 + DDA3937_RS01175 0.22 -2.1
268,044 + DDA3937_RS01175 0.22 -2.8
268,045 - DDA3937_RS01175 0.22 -1.2
268,045 - DDA3937_RS01175 0.22 -2.9
268,079 + DDA3937_RS01175 0.24 -1.0
268,079 + DDA3937_RS01175 0.24 -0.8
268,079 + DDA3937_RS01175 0.24 -2.0
268,080 - DDA3937_RS01175 0.24 -1.9
268,080 - DDA3937_RS01175 0.24 +0.7
268,177 + DDA3937_RS01175 0.29 -3.6
268,279 + DDA3937_RS01175 0.34 -2.5
268,279 + DDA3937_RS01175 0.34 -1.3
268,279 + DDA3937_RS01175 0.34 -1.5
268,279 + DDA3937_RS01175 0.34 -1.4
268,279 + DDA3937_RS01175 0.34 -3.1
268,279 + DDA3937_RS01175 0.34 -3.8
268,279 + DDA3937_RS01175 0.34 -1.1
268,280 - DDA3937_RS01175 0.34 -0.5
268,280 - DDA3937_RS01175 0.34 -2.5
268,280 - DDA3937_RS01175 0.34 -0.6
268,280 - DDA3937_RS01175 0.34 +1.1
268,280 - DDA3937_RS01175 0.34 -2.1
268,280 - DDA3937_RS01175 0.34 +0.1
268,280 - DDA3937_RS01175 0.34 -0.9
268,286 + DDA3937_RS01175 0.35 -1.7
268,286 + DDA3937_RS01175 0.35 -2.8
268,414 - DDA3937_RS01175 0.42 -0.5
268,577 + DDA3937_RS01175 0.50 -0.9
268,577 + DDA3937_RS01175 0.50 -3.0
268,577 + DDA3937_RS01175 0.50 -0.5

Or see this region's nucleotide sequence