Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00795

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00790 and DDA3937_RS00795 are separated by 358 nucleotides DDA3937_RS00790: DDA3937_RS00790 - hypothetical protein, at 185,220 to 185,708 _RS00790 DDA3937_RS00795: DDA3937_RS00795 - phage tail protein, at 186,067 to 186,537 _RS00795 Position (kb) 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 185.070 kb on + strandat 185.098 kb on - strandat 185.154 kb on + strandat 185.154 kb on + strandat 185.154 kb on + strandat 185.155 kb on - strandat 185.155 kb on - strandat 185.155 kb on - strandat 185.156 kb on + strandat 185.157 kb on - strandat 185.157 kb on - strandat 185.157 kb on - strandat 185.157 kb on - strandat 185.157 kb on - strandat 185.187 kb on - strandat 185.222 kb on - strandat 185.334 kb on - strand, within DDA3937_RS00790at 185.417 kb on + strand, within DDA3937_RS00790at 185.417 kb on + strand, within DDA3937_RS00790at 185.417 kb on + strand, within DDA3937_RS00790at 185.418 kb on - strand, within DDA3937_RS00790at 185.418 kb on - strand, within DDA3937_RS00790at 185.419 kb on + strand, within DDA3937_RS00790at 185.419 kb on + strand, within DDA3937_RS00790at 185.420 kb on - strand, within DDA3937_RS00790at 185.420 kb on - strand, within DDA3937_RS00790at 185.420 kb on - strand, within DDA3937_RS00790at 185.431 kb on + strand, within DDA3937_RS00790at 185.431 kb on + strand, within DDA3937_RS00790at 185.432 kb on - strand, within DDA3937_RS00790at 185.465 kb on - strand, within DDA3937_RS00790at 185.557 kb on + strand, within DDA3937_RS00790at 185.564 kb on + strand, within DDA3937_RS00790at 185.665 kb on - strandat 185.753 kb on + strandat 185.756 kb on + strandat 185.756 kb on + strandat 185.757 kb on - strandat 185.862 kb on + strandat 185.863 kb on - strandat 185.863 kb on - strandat 185.866 kb on + strandat 185.895 kb on + strandat 185.993 kb on - strandat 186.011 kb on - strandat 186.011 kb on - strandat 186.066 kb on + strandat 186.066 kb on + strandat 186.079 kb on + strandat 186.080 kb on - strandat 186.081 kb on + strandat 186.081 kb on + strandat 186.081 kb on + strandat 186.201 kb on + strand, within DDA3937_RS00795at 186.202 kb on - strand, within DDA3937_RS00795at 186.347 kb on - strand, within DDA3937_RS00795at 186.394 kb on + strand, within DDA3937_RS00795at 186.395 kb on - strand, within DDA3937_RS00795at 186.397 kb on - strand, within DDA3937_RS00795at 186.437 kb on + strand, within DDA3937_RS00795at 186.517 kb on + strandat 186.518 kb on - strandat 186.518 kb on - strandat 186.526 kb on - strandat 186.582 kb on + strandat 186.583 kb on - strandat 186.583 kb on - strandat 186.620 kb on + strandat 186.651 kb on + strandat 186.681 kb on + strandat 186.681 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.696 kb on - strandat 186.835 kb on + strandat 186.835 kb on + strandat 186.836 kb on - strandat 186.836 kb on - strandat 186.904 kb on + strandat 186.905 kb on - strandat 186.933 kb on + strandat 186.990 kb on - strandat 187.044 kb on - strandat 187.160 kb on + strandat 187.204 kb on + strandat 187.234 kb on - strandat 187.238 kb on - strandat 187.339 kb on - strandat 187.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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185,070 + +0.6
185,098 - +1.4
185,154 + +0.7
185,154 + -2.4
185,154 + -0.7
185,155 - -0.3
185,155 - -1.2
185,155 - +0.3
185,156 + +0.6
185,157 - -0.6
185,157 - -0.1
185,157 - +1.5
185,157 - -0.5
185,157 - -0.9
185,187 - -0.7
185,222 - -0.3
185,334 - DDA3937_RS00790 0.23 +0.7
185,417 + DDA3937_RS00790 0.40 -1.2
185,417 + DDA3937_RS00790 0.40 +1.4
185,417 + DDA3937_RS00790 0.40 -0.2
185,418 - DDA3937_RS00790 0.40 +0.2
185,418 - DDA3937_RS00790 0.40 -0.1
185,419 + DDA3937_RS00790 0.41 -1.4
185,419 + DDA3937_RS00790 0.41 -1.7
185,420 - DDA3937_RS00790 0.41 +2.0
185,420 - DDA3937_RS00790 0.41 +0.3
185,420 - DDA3937_RS00790 0.41 -1.2
185,431 + DDA3937_RS00790 0.43 +1.0
185,431 + DDA3937_RS00790 0.43 -0.4
185,432 - DDA3937_RS00790 0.43 -0.3
185,465 - DDA3937_RS00790 0.50 -0.0
185,557 + DDA3937_RS00790 0.69 +1.1
185,564 + DDA3937_RS00790 0.70 -0.4
185,665 - +0.3
185,753 + +0.4
185,756 + -1.9
185,756 + +0.1
185,757 - -0.2
185,862 + +0.1
185,863 - +0.5
185,863 - +2.5
185,866 + -1.7
185,895 + +0.7
185,993 - -0.4
186,011 - +0.2
186,011 - +0.9
186,066 + -1.4
186,066 + +0.3
186,079 + +0.0
186,080 - +0.3
186,081 + -0.1
186,081 + -2.1
186,081 + +0.3
186,201 + DDA3937_RS00795 0.28 -0.9
186,202 - DDA3937_RS00795 0.29 -1.1
186,347 - DDA3937_RS00795 0.59 +0.1
186,394 + DDA3937_RS00795 0.69 -0.9
186,395 - DDA3937_RS00795 0.70 -0.4
186,397 - DDA3937_RS00795 0.70 -1.4
186,437 + DDA3937_RS00795 0.79 -2.0
186,517 + +0.9
186,518 - -0.3
186,518 - -0.4
186,526 - +0.4
186,582 + -0.2
186,583 - -0.1
186,583 - +0.6
186,620 + -0.3
186,651 + +0.0
186,681 + -0.7
186,681 + -1.7
186,695 + -0.4
186,695 + -0.0
186,695 + -0.2
186,695 + +0.3
186,696 - -0.2
186,835 + +2.9
186,835 + -2.8
186,836 - -1.3
186,836 - +0.6
186,904 + -2.2
186,905 - -1.4
186,933 + +0.1
186,990 - -0.9
187,044 - +0.8
187,160 + -2.0
187,204 + +1.9
187,234 - +0.2
187,238 - +0.5
187,339 - -1.7
187,340 + +2.1

Or see this region's nucleotide sequence