Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00515 and DDA3937_RS00520 are separated by 462 nucleotides DDA3937_RS00520 and DDA3937_RS00525 overlap by 10 nucleotides DDA3937_RS00525 and DDA3937_RS00530 are separated by 108 nucleotides
DDA3937_RS00515: DDA3937_RS00515 - EamA family transporter, at 119,187 to 120,095
_RS00515
DDA3937_RS00520: DDA3937_RS00520 - cellulose biosynthesis protein BcsO, at 120,558 to 121,163
_RS00520
DDA3937_RS00525: DDA3937_RS00525 - cellulose synthase operon protein YhjQ, at 121,154 to 121,969
_RS00525
DDA3937_RS00530: DDA3937_RS00530 - UDP-forming cellulose synthase catalytic subunit, at 122,078 to 124,168
_RS00530
Position (kb) 120
121
122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 119.672 kb on + strand, within DDA3937_RS00515 at 119.672 kb on + strand, within DDA3937_RS00515 at 119.672 kb on + strand, within DDA3937_RS00515 at 119.829 kb on - strand, within DDA3937_RS00515 at 119.842 kb on + strand, within DDA3937_RS00515 at 119.842 kb on + strand, within DDA3937_RS00515 at 119.842 kb on + strand, within DDA3937_RS00515 at 119.843 kb on - strand, within DDA3937_RS00515 at 119.847 kb on + strand, within DDA3937_RS00515 at 119.847 kb on + strand, within DDA3937_RS00515 at 119.847 kb on + strand, within DDA3937_RS00515 at 119.847 kb on + strand, within DDA3937_RS00515 at 119.847 kb on + strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.848 kb on - strand, within DDA3937_RS00515 at 119.858 kb on + strand, within DDA3937_RS00515 at 119.858 kb on + strand, within DDA3937_RS00515 at 120.022 kb on + strand at 120.022 kb on + strand at 120.105 kb on + strand at 120.126 kb on + strand at 120.126 kb on + strand at 120.127 kb on - strand at 120.127 kb on - strand at 120.127 kb on - strand at 120.143 kb on + strand at 120.143 kb on + strand at 120.144 kb on - strand at 120.144 kb on - strand at 120.198 kb on + strand at 120.199 kb on - strand at 120.214 kb on - strand at 120.243 kb on - strand at 120.246 kb on + strand at 120.246 kb on + strand at 120.247 kb on - strand at 120.247 kb on - strand at 120.247 kb on - strand at 120.247 kb on - strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.275 kb on + strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.276 kb on - strand at 120.291 kb on + strand at 120.292 kb on - strand at 120.295 kb on + strand at 120.295 kb on + strand at 120.295 kb on + strand at 120.296 kb on - strand at 120.343 kb on + strand at 120.343 kb on + strand at 120.344 kb on - strand at 120.348 kb on - strand at 120.348 kb on - strand at 120.348 kb on - strand at 120.351 kb on + strand at 120.352 kb on - strand at 120.352 kb on - strand at 120.352 kb on - strand at 120.417 kb on + strand at 120.418 kb on - strand at 120.418 kb on - strand at 120.425 kb on - strand at 120.450 kb on + strand at 120.466 kb on - strand at 120.471 kb on + strand at 120.471 kb on + strand at 120.472 kb on - strand at 120.473 kb on + strand at 120.474 kb on - strand at 120.479 kb on + strand at 120.479 kb on + strand at 120.479 kb on + strand at 120.480 kb on - strand at 120.518 kb on + strand at 120.519 kb on - strand at 120.576 kb on - strand at 120.614 kb on + strand at 120.641 kb on - strand, within DDA3937_RS00520 at 120.659 kb on - strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.671 kb on + strand, within DDA3937_RS00520 at 120.672 kb on - strand, within DDA3937_RS00520 at 120.672 kb on - strand, within DDA3937_RS00520 at 120.672 kb on - strand, within DDA3937_RS00520 at 120.672 kb on - strand, within DDA3937_RS00520 at 120.809 kb on + strand, within DDA3937_RS00520 at 120.809 kb on + strand, within DDA3937_RS00520 at 120.860 kb on + strand, within DDA3937_RS00520 at 120.940 kb on + strand, within DDA3937_RS00520 at 121.072 kb on + strand, within DDA3937_RS00520 at 121.073 kb on - strand at 121.162 kb on - strand at 121.223 kb on + strand at 121.224 kb on - strand at 121.326 kb on - strand, within DDA3937_RS00525 at 121.444 kb on + strand, within DDA3937_RS00525 at 121.444 kb on + strand, within DDA3937_RS00525 at 121.444 kb on + strand at 121.444 kb on + strand, within DDA3937_RS00525 at 121.444 kb on + strand, within DDA3937_RS00525 at 121.445 kb on - strand, within DDA3937_RS00525 at 121.445 kb on - strand, within DDA3937_RS00525 at 121.445 kb on - strand at 121.484 kb on - strand, within DDA3937_RS00525 at 121.484 kb on - strand, within DDA3937_RS00525 at 121.499 kb on + strand, within DDA3937_RS00525 at 121.614 kb on + strand, within DDA3937_RS00525 at 121.614 kb on + strand, within DDA3937_RS00525 at 121.682 kb on + strand, within DDA3937_RS00525 at 121.682 kb on + strand, within DDA3937_RS00525 at 121.682 kb on + strand, within DDA3937_RS00525 at 121.683 kb on - strand, within DDA3937_RS00525 at 121.692 kb on + strand, within DDA3937_RS00525 at 121.693 kb on - strand, within DDA3937_RS00525 at 121.753 kb on + strand, within DDA3937_RS00525 at 121.754 kb on - strand, within DDA3937_RS00525 at 121.779 kb on + strand, within DDA3937_RS00525 at 121.779 kb on + strand, within DDA3937_RS00525 at 121.780 kb on - strand, within DDA3937_RS00525 at 121.780 kb on - strand, within DDA3937_RS00525 at 121.967 kb on + strand at 121.967 kb on + strand at 121.967 kb on + strand at 121.968 kb on - strand at 121.968 kb on - strand at 121.968 kb on - strand at 121.991 kb on + strand at 121.992 kb on - strand at 122.003 kb on - strand at 122.003 kb on - strand at 122.060 kb on + strand at 122.061 kb on - strand at 122.061 kb on - strand at 122.112 kb on + strand at 122.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 119,672 + DDA3937_RS00515 0.53 -0.6 119,672 + DDA3937_RS00515 0.53 -2.7 119,672 + DDA3937_RS00515 0.53 -0.1 119,829 - DDA3937_RS00515 0.71 +0.2 119,842 + DDA3937_RS00515 0.72 -0.9 119,842 + DDA3937_RS00515 0.72 -1.4 119,842 + DDA3937_RS00515 0.72 -1.4 119,843 - DDA3937_RS00515 0.72 +0.3 119,847 + DDA3937_RS00515 0.73 -2.3 119,847 + DDA3937_RS00515 0.73 +0.1 119,847 + DDA3937_RS00515 0.73 +0.3 119,847 + DDA3937_RS00515 0.73 -4.1 119,847 + DDA3937_RS00515 0.73 +0.1 119,848 - DDA3937_RS00515 0.73 -0.7 119,848 - DDA3937_RS00515 0.73 -1.9 119,848 - DDA3937_RS00515 0.73 -1.2 119,848 - DDA3937_RS00515 0.73 -0.5 119,848 - DDA3937_RS00515 0.73 +0.2 119,848 - DDA3937_RS00515 0.73 +2.3 119,848 - DDA3937_RS00515 0.73 +1.4 119,848 - DDA3937_RS00515 0.73 +0.6 119,848 - DDA3937_RS00515 0.73 -0.6 119,858 + DDA3937_RS00515 0.74 -2.4 119,858 + DDA3937_RS00515 0.74 +0.9 120,022 + -1.2 120,022 + -2.2 120,105 + +0.4 120,126 + -0.2 120,126 + -1.0 120,127 - +0.4 120,127 - -1.7 120,127 - +0.3 120,143 + +1.6 120,143 + +0.1 120,144 - -0.1 120,144 - -0.0 120,198 + +1.1 120,199 - +2.1 120,214 - -0.9 120,243 - +1.1 120,246 + -1.2 120,246 + -0.9 120,247 - -0.1 120,247 - +0.6 120,247 - +0.1 120,247 - +0.2 120,275 + -0.4 120,275 + +0.7 120,275 + +0.8 120,275 + -0.3 120,275 + -0.8 120,275 + +0.2 120,275 + -0.1 120,276 - -0.3 120,276 - -1.9 120,276 - -0.8 120,276 - -0.2 120,276 - +0.3 120,276 - +0.6 120,276 - -1.4 120,291 + +2.0 120,292 - +0.3 120,295 + +0.9 120,295 + -0.6 120,295 + -0.3 120,296 - +0.0 120,343 + +1.2 120,343 + -0.3 120,344 - -0.6 120,348 - +0.9 120,348 - -1.3 120,348 - +0.6 120,351 + +0.0 120,352 - -0.2 120,352 - +1.1 120,352 - -0.4 120,417 + -1.7 120,418 - -0.9 120,418 - -0.4 120,425 - -0.4 120,450 + -0.9 120,466 - +0.3 120,471 + +0.6 120,471 + -0.3 120,472 - -1.9 120,473 + -0.7 120,474 - +0.3 120,479 + +1.4 120,479 + +1.1 120,479 + +1.4 120,480 - -0.4 120,518 + +0.2 120,519 - +1.5 120,576 - +0.0 120,614 + -0.4 120,641 - DDA3937_RS00520 0.14 -1.2 120,659 - DDA3937_RS00520 0.17 -0.4 120,671 + DDA3937_RS00520 0.19 -0.4 120,671 + DDA3937_RS00520 0.19 -2.9 120,671 + DDA3937_RS00520 0.19 -0.3 120,671 + DDA3937_RS00520 0.19 -0.3 120,671 + DDA3937_RS00520 0.19 -0.7 120,671 + DDA3937_RS00520 0.19 +0.2 120,672 - DDA3937_RS00520 0.19 -0.6 120,672 - DDA3937_RS00520 0.19 -0.4 120,672 - DDA3937_RS00520 0.19 -1.9 120,672 - DDA3937_RS00520 0.19 -1.2 120,809 + DDA3937_RS00520 0.41 -0.4 120,809 + DDA3937_RS00520 0.41 -0.6 120,860 + DDA3937_RS00520 0.50 +0.3 120,940 + DDA3937_RS00520 0.63 -1.2 121,072 + DDA3937_RS00520 0.85 +0.5 121,073 - +1.1 121,162 - -1.1 121,223 + -2.4 121,224 - -0.4 121,326 - DDA3937_RS00525 0.21 -0.7 121,444 + DDA3937_RS00525 0.36 -0.2 121,444 + DDA3937_RS00525 0.36 -1.2 121,444 + -1.2 121,444 + DDA3937_RS00525 0.36 -1.0 121,444 + DDA3937_RS00525 0.36 -0.1 121,445 - DDA3937_RS00525 0.36 -1.2 121,445 - DDA3937_RS00525 0.36 -0.4 121,445 - +0.1 121,484 - DDA3937_RS00525 0.40 -0.8 121,484 - DDA3937_RS00525 0.40 -0.5 121,499 + DDA3937_RS00525 0.42 -1.1 121,614 + DDA3937_RS00525 0.56 -0.3 121,614 + DDA3937_RS00525 0.56 +0.9 121,682 + DDA3937_RS00525 0.65 -0.7 121,682 + DDA3937_RS00525 0.65 -0.8 121,682 + DDA3937_RS00525 0.65 -0.6 121,683 - DDA3937_RS00525 0.65 -1.0 121,692 + DDA3937_RS00525 0.66 +0.1 121,693 - DDA3937_RS00525 0.66 -0.9 121,753 + DDA3937_RS00525 0.73 +0.4 121,754 - DDA3937_RS00525 0.74 +1.3 121,779 + DDA3937_RS00525 0.77 +0.4 121,779 + DDA3937_RS00525 0.77 -1.2 121,780 - DDA3937_RS00525 0.77 -2.2 121,780 - DDA3937_RS00525 0.77 -1.2 121,967 + -0.9 121,967 + -0.4 121,967 + -0.4 121,968 - -0.1 121,968 - -1.2 121,968 - -0.1 121,991 + +0.1 121,992 - +0.3 122,003 - -0.4 122,003 - -1.0 122,060 + -0.4 122,061 - -1.0 122,061 - -0.7 122,112 + -0.5 122,113 - -0.7
Or see this region's nucleotide sequence