Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00465

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
109,960	+		DDA3937_RS00460	0.55	+0.6
110,113	+		DDA3937_RS00460	0.64	+0.3
110,134	+		DDA3937_RS00460	0.65	+0.7
110,134	+		DDA3937_RS00460	0.65	+0.6
110,140	+		DDA3937_RS00460	0.66	+0.6
110,233	+		DDA3937_RS00460	0.72	+0.5
110,234	-		DDA3937_RS00460	0.72	+0.6
110,314	+		DDA3937_RS00460	0.77	-1.4
110,314	+		DDA3937_RS00460	0.77	-0.2
110,314	+		DDA3937_RS00460	0.77	-0.2
110,314	+		DDA3937_RS00460	0.77	-0.6
110,314	+		DDA3937_RS00460	0.77	-1.7
110,314	+		DDA3937_RS00460	0.77	+0.3
110,315	-		DDA3937_RS00460	0.77	+1.4
110,330	-		DDA3937_RS00460	0.78	+0.6
110,456	-		DDA3937_RS00460	0.86	-0.3
110,456	-		DDA3937_RS00460	0.86	-0.6
110,470	+		DDA3937_RS00460	0.86	+0.6
110,470	+		DDA3937_RS00460	0.86	-1.7
110,470	+		DDA3937_RS00460	0.86	-0.7
110,470	+		DDA3937_RS00460	0.86	-0.5
110,470	+				-0.9
110,470	+		DDA3937_RS00460	0.86	+0.9
110,470	+		DDA3937_RS00460	0.86	+1.6
110,470	+		DDA3937_RS00460	0.86	-0.2
110,470	+		DDA3937_RS00460	0.86	-0.4
110,470	+		DDA3937_RS00460	0.86	-0.9
110,470	+		DDA3937_RS00460	0.86	-0.4
110,470	+		DDA3937_RS00460	0.86	+0.1
110,471	-		DDA3937_RS00460	0.86	-1.5
110,471	-		DDA3937_RS00460	0.86	-0.8
110,471	-		DDA3937_RS00460	0.86	-1.4
110,471	-		DDA3937_RS00460	0.86	+1.6
110,471	-		DDA3937_RS00460	0.86	-0.1
110,471	-		DDA3937_RS00460	0.86	+3.8
110,471	-		DDA3937_RS00460	0.86	-0.4
110,530	-				-1.7
110,539	+				+0.1
110,539	+				-1.1
110,540	-				-0.2
110,540	-				-0.1
110,605	+				-3.4
110,606	-				+0.9
110,636	-				+0.5
110,675	+				-0.3
110,675	+				-0.1
110,675	+				+0.7
110,675	+				-2.4
110,675	+				+2.0
110,675	+				-0.2
110,675	+				+0.3
110,675	+				-1.3
110,675	+				+0.9
110,675	+				-0.8
110,675	+				-0.3
110,675	+				-0.4
110,676	-				+1.4
110,676	-				-0.1
110,681	+				-0.1
110,681	+				-1.7
110,682	-				-0.9
110,682	-				+2.1
110,686	+				+0.7
110,686	+				-0.3
110,686	+				+1.1
110,686	+				+0.1
110,686	+				+0.1
110,686	+				+0.6
110,686	+				-0.4
110,686	+				+0.3
110,687	-				+1.6
110,687	-				-1.4
110,687	-				+1.4
110,690	+				+0.2
110,690	+				+0.6
110,690	+				+0.7
110,690	+				+0.1
110,690	+				-1.7
110,691	-				-1.6
110,691	-				-1.1
110,694	+				-1.7
110,694	+				+0.8
110,694	+				-0.1
110,694	+				-1.4
110,694	+				-1.1
110,695	-				-0.3
110,695	-				-0.2
110,695	-				+0.1
110,708	+				+0.1
110,709	-				-0.5
110,744	+				+0.4
110,796	+				+0.1
110,797	-				+1.0
110,797	-				+0.0
110,880	+				+0.8
110,880	+				-1.0
110,880	+				-0.0
110,880	+				+0.4
110,880	+				-0.1
110,880	+				+0.4
110,880	+				+0.0
110,880	+				-1.2
110,880	+				-0.5
110,881	-				-0.9
110,881	-				+1.3
110,881	-				-2.0
110,881	-				-2.7
110,882	+				-1.2
110,882	+				-0.9
110,882	+				+0.6
110,882	+				+0.4
110,882	+				+0.8
110,882	+				+0.3
110,882	+				+1.6
110,882	+				-1.0
110,882	+				+1.1
110,882	+				-0.9
110,882	+				-0.4
110,883	-				+1.6
110,883	-				+1.5
110,883	-				-0.7
110,883	-				-1.7
110,883	-				-2.9
110,883	-				-2.0
110,883	-				+0.0
110,883	-				+0.2
110,883	-				-1.0
110,883	-				-0.4
110,888	+				+0.2
110,888	+				-0.9
110,888	+				+1.5
110,888	+				+1.7
110,888	+				-0.5
110,888	+				+0.7
110,888	+				+0.5
110,888	+				-0.4
110,888	+				-0.4
110,888	+				-1.1
110,889	-				-0.8
110,889	-				+0.1
110,889	-				+0.7
110,889	-				+2.1
110,890	+				-1.2
110,890	+				-0.6
110,916	+				-2.8
110,930	+				-0.9
110,930	+				+1.0
110,931	-				+0.7
110,970	+				-0.3
110,973	+				-0.7
110,973	+				+1.1
110,973	+				+1.3
110,974	-				+0.4
110,974	-				-0.9
111,045	+		DDA3937_RS00465	0.13	-0.4
111,112	+		DDA3937_RS00465	0.19	-1.2
111,112	+		DDA3937_RS00465	0.19	-1.3
111,113	-		DDA3937_RS00465	0.19	-0.4
111,113	-		DDA3937_RS00465	0.19	-1.0
111,113	-		DDA3937_RS00465	0.19	+1.0
111,113	-		DDA3937_RS00465	0.19	-1.7
111,113	-		DDA3937_RS00465	0.19	-2.0
111,113	-		DDA3937_RS00465	0.19	+0.0
111,122	-		DDA3937_RS00465	0.20	-1.1
111,122	-		DDA3937_RS00465	0.20	+0.7
111,122	-		DDA3937_RS00465	0.20	-2.0
111,122	-		DDA3937_RS00465	0.20	+0.8
111,204	+		DDA3937_RS00465	0.28	-0.8
111,322	-		DDA3937_RS00465	0.40	+0.4
111,322	-		DDA3937_RS00465	0.40	-2.0
111,338	-		DDA3937_RS00465	0.41	-1.8
111,396	+		DDA3937_RS00465	0.47	-0.3
111,396	+		DDA3937_RS00465	0.47	-0.9
111,397	-		DDA3937_RS00465	0.47	-0.9
111,468	+		DDA3937_RS00465	0.54	-0.7
111,468	+		DDA3937_RS00465	0.54	-1.4
111,469	-		DDA3937_RS00465	0.54	+0.5
111,469	-		DDA3937_RS00465	0.54	-1.4
111,480	+		DDA3937_RS00465	0.55	-1.2
111,481	-		DDA3937_RS00465	0.55	-0.4
111,582	+		DDA3937_RS00465	0.65	+0.6
111,582	+		DDA3937_RS00465	0.65	-1.1
111,622	+		DDA3937_RS00465	0.69	-1.2
111,622	+		DDA3937_RS00465	0.69	+1.0
111,622	+		DDA3937_RS00465	0.69	-1.1
111,622	+		DDA3937_RS00465	0.69	-2.0
111,623	-		DDA3937_RS00465	0.69	-0.2
111,623	-		DDA3937_RS00465	0.69	-0.2
111,625	-		DDA3937_RS00465	0.69	+1.9
111,625	-		DDA3937_RS00465	0.69	-1.1
111,735	+		DDA3937_RS00465	0.80	+0.9
111,735	+		DDA3937_RS00465	0.80	-0.4
111,735	+		DDA3937_RS00465	0.80	-0.1
111,736	-		DDA3937_RS00465	0.80	-0.8
111,736	-		DDA3937_RS00465	0.80	-0.1
111,823	+		DDA3937_RS00465	0.89	-0.4
111,846	-				-0.2
111,867	+				-2.3
111,868	-				+0.5
111,868	-				+0.1
111,868	-				-1.2
111,893	+				+0.6
111,893	+				-0.5
111,893	+				-0.4
111,893	+				+0.0
111,898	+				-1.0
111,899	-				+0.1
111,934	+				-2.3
111,934	+				+0.8
111,934	+				+0.4
111,935	-				-0.4
112,022	-				-0.3
112,022	-				+0.4
112,032	+				-0.9
112,032	+				+0.0
112,032	+				+0.2
112,032	+				+0.7
112,033	-				-0.3
112,035	+				-0.5
112,035	+				-2.3
112,036	-				+0.1
112,060	+		DDA3937_RS00470	0.12	-1.3
112,060	+		DDA3937_RS00470	0.12	-1.8
112,060	+		DDA3937_RS00470	0.12	-2.9
112,060	+		DDA3937_RS00470	0.12	-1.2
112,061	-		DDA3937_RS00470	0.12	+1.1
112,061	-		DDA3937_RS00470	0.12	+1.1
112,061	-		DDA3937_RS00470	0.12	+0.1
112,147	-		DDA3937_RS00470	0.22	-0.5
112,183	+		DDA3937_RS00470	0.26	+0.1
112,183	+		DDA3937_RS00470	0.26	-0.5
112,183	+		DDA3937_RS00470	0.26	-0.4
112,183	+		DDA3937_RS00470	0.26	+0.7
112,183	+		DDA3937_RS00470	0.26	+0.1
112,183	+		DDA3937_RS00470	0.26	+0.4
112,184	-		DDA3937_RS00470	0.26	-0.1
112,184	-		DDA3937_RS00470	0.26	-0.2
112,184	-		DDA3937_RS00470	0.26	-0.6
112,184	-		DDA3937_RS00470	0.26	-0.1
112,184	-		DDA3937_RS00470	0.26	-0.4
112,234	+		DDA3937_RS00470	0.32	-1.7
112,234	+		DDA3937_RS00470	0.32	-0.1
112,235	-		DDA3937_RS00470	0.32	+1.2
112,474	+		DDA3937_RS00470	0.58	+0.5
112,474	+		DDA3937_RS00470	0.58	-0.1
112,474	+		DDA3937_RS00470	0.58	+0.8
112,475	-		DDA3937_RS00470	0.58	+0.1
112,475	-		DDA3937_RS00470	0.58	-0.7
112,475	-		DDA3937_RS00470	0.58	-2.0
112,475	-		DDA3937_RS00470	0.58	+1.1
112,475	-		DDA3937_RS00470	0.58	-2.3
112,475	-				+0.1
112,523	-		DDA3937_RS00470	0.64	-2.3
112,523	-		DDA3937_RS00470	0.64	-0.6
112,788	-				+0.4
112,797	+				-0.4
112,797	+				-0.9
112,797	+				-0.1
112,797	+				+1.5
112,798	-				-0.2
112,849	+				-1.4
112,849	+				+1.5
112,865	+				-0.7
112,865	+				-3.0
112,865	+				+0.6
112,865	+				-1.1
112,866	-				-1.2
112,867	+				-1.7
112,867	+				+1.9
112,868	-				-2.1
112,868	-				+0.7
112,868	-				-1.1
112,868	-				+0.6
112,868	-				-2.1
112,873	+				-0.4
112,874	-				+0.1
112,896	+				-0.6
112,897	-				-1.2