Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20355

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,633,539	+		DDA3937_RS20350	0.22	-4.1
4,633,699	-		DDA3937_RS20350	0.38	-0.4
4,633,699	-		DDA3937_RS20350	0.38	+0.5
4,633,920	+		DDA3937_RS20350	0.60	-2.9
4,633,921	-		DDA3937_RS20350	0.60	-2.1
4,633,921	-		DDA3937_RS20350	0.60	-0.8
4,633,965	+		DDA3937_RS20350	0.65	-4.9
4,633,977	+		DDA3937_RS20350	0.66	-3.7
4,633,977	+		DDA3937_RS20350	0.66	-1.6
4,634,145	-		DDA3937_RS20350	0.83	-2.3
4,634,161	+		DDA3937_RS20350	0.84	-0.8
4,634,161	+		DDA3937_RS20350	0.84	-3.1
4,634,162	-		DDA3937_RS20350	0.84	-3.9
4,634,231	+				+0.2
4,634,231	+				-2.7
4,634,256	-				-1.5
4,634,256	-				+0.2
4,634,259	+				-2.6
4,634,260	-				-2.4
4,634,284	-				-1.1
4,634,284	-				-2.4
4,634,308	+				-2.1
4,634,308	+				-3.0
4,634,308	+				-4.8
4,634,308	+				-2.7
4,634,309	-				-2.8
4,634,327	-				-2.0
4,634,328	+				-0.8
4,634,328	+				-1.2
4,634,329	-				+1.1
4,634,329	-				+1.2
4,634,329	-				-0.2
4,634,329	-				+1.3
4,634,334	+				-2.6
4,634,335	-				-2.3
4,634,344	+				-2.4
4,634,345	-				-1.4
4,634,345	-				-0.6
4,634,345	-				-1.6
4,634,345	-				-0.4
4,634,345	-				-1.6
4,634,345	-				+2.3
4,634,345	-				-1.1
4,634,414	-				-1.0
4,634,443	+				-1.6
4,634,443	+				+0.6
4,634,443	+				-0.9
4,634,443	+				+0.2
4,634,443	+				-1.6
4,634,443	+				-0.5
4,634,443	+				+0.2
4,634,443	+				-0.5
4,634,443	+				+0.6
4,634,443	+				-0.8
4,634,444	-				+0.1
4,634,444	-				+0.4
4,634,444	-				-2.1
4,634,444	-				+0.6
4,634,444	-				+0.2
4,634,444	-				-0.8
4,634,444	-				+0.5
4,634,444	-				-2.3
4,634,444	-				-0.4
4,634,444	-				-1.5
4,634,444	-				-1.6
4,634,444	-				-0.4
4,634,471	+				-0.0
4,634,660	+		DDA3937_RS20355	0.11	-2.6
4,634,661	-		DDA3937_RS20355	0.11	-3.7
4,634,686	+		DDA3937_RS20355	0.13	-0.8
4,634,687	-		DDA3937_RS20355	0.13	+1.2
4,634,772	-		DDA3937_RS20355	0.21	-1.4
4,634,840	+		DDA3937_RS20355	0.27	-2.5
4,634,840	+		DDA3937_RS20355	0.27	-2.5
4,634,841	-		DDA3937_RS20355	0.27	-4.3
4,634,841	-		DDA3937_RS20355	0.27	-2.1
4,634,841	-		DDA3937_RS20355	0.27	-3.5
4,634,841	-		DDA3937_RS20355	0.27	-2.0
4,634,841	-		DDA3937_RS20355	0.27	-2.6
4,634,841	-		DDA3937_RS20355	0.27	-1.2
4,634,841	-		DDA3937_RS20355	0.27	-0.4
4,634,841	-		DDA3937_RS20355	0.27	-4.2
4,634,847	+		DDA3937_RS20355	0.27	-3.8
4,634,888	+		DDA3937_RS20355	0.31	-1.7
4,634,888	+		DDA3937_RS20355	0.31	-1.8
4,634,888	+		DDA3937_RS20355	0.31	-1.4
4,634,889	-		DDA3937_RS20355	0.31	-2.0
4,634,940	+		DDA3937_RS20355	0.35	-3.1
4,634,941	-		DDA3937_RS20355	0.36	-1.4
4,634,941	-		DDA3937_RS20355	0.36	-4.0
4,634,941	-		DDA3937_RS20355	0.36	-3.6
4,634,988	+		DDA3937_RS20355	0.40	-2.0
4,634,989	-		DDA3937_RS20355	0.40	-3.3
4,635,030	-		DDA3937_RS20355	0.43	+0.2
4,635,096	-		DDA3937_RS20355	0.49	-2.6
4,635,096	-		DDA3937_RS20355	0.49	-1.7
4,635,184	+		DDA3937_RS20355	0.57	-2.5
4,635,185	-		DDA3937_RS20355	0.57	+1.4
4,635,185	-		DDA3937_RS20355	0.57	-1.9
4,635,210	+		DDA3937_RS20355	0.59	-1.9
4,635,445	-		DDA3937_RS20355	0.79	-1.4
4,635,445	-		DDA3937_RS20355	0.79	-3.9
4,635,519	+		DDA3937_RS20355	0.86	-0.8
4,635,519	+		DDA3937_RS20355	0.86	-3.7
4,635,519	+		DDA3937_RS20355	0.86	-2.0
4,635,519	+		DDA3937_RS20355	0.86	+0.6
4,635,519	+		DDA3937_RS20355	0.86	-0.9
4,635,520	-		DDA3937_RS20355	0.86	-1.4
4,635,520	-		DDA3937_RS20355	0.86	-1.1
4,635,520	-		DDA3937_RS20355	0.86	-3.7
4,635,611	+				-1.7
4,635,612	-				-2.4
4,635,651	-				-1.8
4,635,776	+				-2.6
4,635,777	-				-0.9
4,635,777	-				-2.6
4,635,787	+				+0.2
4,635,787	+				+1.7
4,635,788	-				-0.8
4,635,788	-				-1.6
4,635,788	-				-1.1
4,635,844	+				-0.1
4,635,852	+				+0.0
4,635,853	-				-0.4
4,635,853	-				-1.2
4,635,859	+				-2.0
4,635,859	+				+1.4
4,635,859	+				+1.2
4,635,860	-				-1.8
4,635,860	-				-2.4
4,635,896	+				+0.8
4,635,900	+				-2.4
4,635,900	+				-0.0
4,635,900	+				-0.9
4,635,900	+				+0.9
4,635,900	+				+0.8
4,635,900	+				-1.1
4,635,900	+				+0.4
4,635,900	+				-0.7
4,635,900	+				+0.4
4,635,901	-				-3.2
4,635,901	-				-1.5
4,635,901	-				-5.2
4,635,901	-				-2.0
4,635,965	+				-2.1
4,635,965	+				-0.8
4,635,965	+				-2.6
4,635,965	+				-3.6
4,635,966	-				-2.4
4,635,969	+				-3.8
4,635,969	+				-2.1
4,635,969	+				-4.2
4,635,969	+				-0.8
4,635,969	+				-1.1
4,635,969	+				-2.3
4,635,969	+				-3.9
4,635,970	-				-4.3
4,635,983	-				-3.0
4,635,983	-				-3.3
4,636,022	+				-3.8
4,636,232	-				-3.9
4,636,239	+		DDA3937_RS20360	0.10	-4.4
4,636,239	+		DDA3937_RS20360	0.10	-2.3
4,636,239	+		DDA3937_RS20360	0.10	-2.4
4,636,239	+		DDA3937_RS20360	0.10	-3.7
4,636,239	+		DDA3937_RS20360	0.10	-1.4
4,636,239	+		DDA3937_RS20360	0.10	-3.8
4,636,240	-		DDA3937_RS20360	0.10	-0.4
4,636,240	-		DDA3937_RS20360	0.10	-3.0
4,636,240	-		DDA3937_RS20360	0.10	+2.5
4,636,240	-		DDA3937_RS20360	0.10	-2.3
4,636,266	+		DDA3937_RS20360	0.11	-4.5
4,636,434	+		DDA3937_RS20360	0.18	-5.0
4,636,435	-		DDA3937_RS20360	0.18	-1.0
4,636,435	-		DDA3937_RS20360	0.18	-4.0
4,636,474	+		DDA3937_RS20360	0.19	-2.7
4,636,474	+		DDA3937_RS20360	0.19	-1.1
4,636,474	+		DDA3937_RS20360	0.19	-3.0
4,636,475	-		DDA3937_RS20360	0.19	-0.8
4,636,531	-		DDA3937_RS20360	0.21	-3.0
4,636,602	+		DDA3937_RS20360	0.24	-6.8
4,636,602	+		DDA3937_RS20360	0.24	-2.4
4,636,602	+		DDA3937_RS20360	0.24	-1.8
4,636,603	-		DDA3937_RS20360	0.24	-4.0