Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19060 and DDA3937_RS19065 are separated by 305 nucleotides DDA3937_RS19065 and DDA3937_RS19070 are separated by 433 nucleotides DDA3937_RS19070 and DDA3937_RS19075 are separated by 108 nucleotides
DDA3937_RS19060: DDA3937_RS19060 - malate synthase A, at 4,359,315 to 4,360,913
_RS19060
DDA3937_RS19065: DDA3937_RS19065 - homoserine O-succinyltransferase, at 4,361,219 to 4,362,148
_RS19065
DDA3937_RS19070: DDA3937_RS19070 - 5S ribosomal RNA, at 4,362,582 to 4,362,697
_RS19070
DDA3937_RS19075: DDA3937_RS19075 - 23S ribosomal RNA, at 4,362,806 to 4,365,714
_RS19075
Position (kb) 4361
4362
4363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4360.233 kb on + strand, within DDA3937_RS19060 at 4360.233 kb on + strand, within DDA3937_RS19060 at 4360.234 kb on - strand, within DDA3937_RS19060 at 4360.234 kb on - strand, within DDA3937_RS19060 at 4360.234 kb on - strand, within DDA3937_RS19060 at 4360.234 kb on - strand, within DDA3937_RS19060 at 4360.234 kb on - strand, within DDA3937_RS19060 at 4360.283 kb on - strand, within DDA3937_RS19060 at 4360.289 kb on - strand, within DDA3937_RS19060 at 4360.321 kb on + strand, within DDA3937_RS19060 at 4360.321 kb on + strand, within DDA3937_RS19060 at 4360.456 kb on + strand, within DDA3937_RS19060 at 4360.457 kb on - strand, within DDA3937_RS19060 at 4360.457 kb on - strand, within DDA3937_RS19060 at 4360.478 kb on + strand, within DDA3937_RS19060 at 4360.479 kb on - strand, within DDA3937_RS19060 at 4360.480 kb on + strand, within DDA3937_RS19060 at 4360.480 kb on + strand, within DDA3937_RS19060 at 4360.480 kb on + strand, within DDA3937_RS19060 at 4360.480 kb on + strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.481 kb on - strand, within DDA3937_RS19060 at 4360.575 kb on - strand, within DDA3937_RS19060 at 4360.604 kb on + strand, within DDA3937_RS19060 at 4360.878 kb on - strand at 4360.997 kb on + strand at 4360.997 kb on + strand at 4360.997 kb on + strand at 4360.998 kb on - strand at 4360.998 kb on - strand at 4360.998 kb on - strand at 4360.998 kb on - strand at 4360.998 kb on - strand at 4360.998 kb on - strand at 4361.049 kb on + strand at 4361.083 kb on - strand at 4361.088 kb on + strand at 4361.106 kb on - strand at 4361.106 kb on - strand at 4361.143 kb on + strand at 4361.186 kb on - strand at 4361.240 kb on - strand at 4361.274 kb on + strand at 4361.275 kb on - strand at 4361.275 kb on - strand at 4361.315 kb on - strand, within DDA3937_RS19065 at 4361.361 kb on + strand, within DDA3937_RS19065 at 4361.361 kb on + strand, within DDA3937_RS19065 at 4361.362 kb on - strand, within DDA3937_RS19065 at 4361.383 kb on + strand, within DDA3937_RS19065 at 4361.398 kb on - strand, within DDA3937_RS19065 at 4361.437 kb on - strand, within DDA3937_RS19065 at 4361.490 kb on + strand, within DDA3937_RS19065 at 4361.491 kb on - strand, within DDA3937_RS19065 at 4361.635 kb on + strand, within DDA3937_RS19065 at 4361.635 kb on + strand, within DDA3937_RS19065 at 4361.635 kb on + strand, within DDA3937_RS19065 at 4361.636 kb on - strand, within DDA3937_RS19065 at 4361.646 kb on + strand, within DDA3937_RS19065 at 4361.647 kb on - strand, within DDA3937_RS19065 at 4361.647 kb on - strand, within DDA3937_RS19065 at 4361.647 kb on - strand, within DDA3937_RS19065 at 4361.647 kb on - strand, within DDA3937_RS19065 at 4361.691 kb on + strand, within DDA3937_RS19065 at 4361.691 kb on + strand, within DDA3937_RS19065 at 4361.692 kb on - strand, within DDA3937_RS19065 at 4361.692 kb on - strand, within DDA3937_RS19065 at 4361.692 kb on - strand, within DDA3937_RS19065 at 4361.692 kb on - strand, within DDA3937_RS19065 at 4361.737 kb on + strand, within DDA3937_RS19065 at 4361.737 kb on + strand, within DDA3937_RS19065 at 4361.737 kb on + strand, within DDA3937_RS19065 at 4361.738 kb on - strand, within DDA3937_RS19065 at 4361.790 kb on + strand, within DDA3937_RS19065 at 4361.790 kb on + strand, within DDA3937_RS19065 at 4361.790 kb on + strand, within DDA3937_RS19065 at 4361.791 kb on - strand, within DDA3937_RS19065 at 4361.791 kb on - strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.795 kb on + strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.796 kb on - strand, within DDA3937_RS19065 at 4361.985 kb on - strand, within DDA3937_RS19065 at 4362.025 kb on + strand, within DDA3937_RS19065 at 4362.026 kb on - strand, within DDA3937_RS19065 at 4362.026 kb on - strand, within DDA3937_RS19065 at 4362.029 kb on + strand, within DDA3937_RS19065 at 4362.029 kb on + strand, within DDA3937_RS19065 at 4362.029 kb on + strand, within DDA3937_RS19065 at 4362.029 kb on + strand, within DDA3937_RS19065 at 4362.030 kb on - strand, within DDA3937_RS19065 at 4362.030 kb on - strand, within DDA3937_RS19065 at 4362.035 kb on + strand, within DDA3937_RS19065 at 4362.035 kb on + strand, within DDA3937_RS19065 at 4362.036 kb on - strand, within DDA3937_RS19065 at 4362.149 kb on - strand at 4362.154 kb on + strand at 4362.154 kb on + strand at 4362.155 kb on - strand at 4362.155 kb on - strand at 4362.155 kb on - strand at 4362.155 kb on - strand at 4362.155 kb on - strand at 4362.155 kb on - strand at 4362.243 kb on - strand at 4362.283 kb on + strand at 4362.283 kb on + strand at 4362.283 kb on + strand at 4362.283 kb on + strand at 4362.283 kb on + strand at 4362.284 kb on - strand at 4362.284 kb on - strand at 4362.284 kb on - strand at 4362.284 kb on - strand at 4362.286 kb on - strand at 4362.295 kb on + strand at 4362.301 kb on - strand at 4362.301 kb on - strand at 4362.307 kb on + strand at 4362.307 kb on + strand at 4362.308 kb on - strand at 4362.335 kb on + strand at 4362.335 kb on + strand at 4362.336 kb on - strand at 4362.336 kb on - strand at 4362.379 kb on + strand at 4362.390 kb on + strand at 4362.390 kb on + strand at 4362.390 kb on + strand at 4362.391 kb on - strand at 4362.391 kb on - strand at 4362.391 kb on - strand at 4362.396 kb on - strand at 4362.396 kb on - strand at 4362.474 kb on - strand at 4362.474 kb on - strand at 4362.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,360,233 + DDA3937_RS19060 0.57 -2.1 4,360,233 + DDA3937_RS19060 0.57 -0.9 4,360,234 - DDA3937_RS19060 0.57 +1.0 4,360,234 - DDA3937_RS19060 0.57 -0.9 4,360,234 - DDA3937_RS19060 0.57 -0.4 4,360,234 - DDA3937_RS19060 0.57 -1.8 4,360,234 - DDA3937_RS19060 0.57 +0.1 4,360,283 - DDA3937_RS19060 0.61 -0.9 4,360,289 - DDA3937_RS19060 0.61 +0.9 4,360,321 + DDA3937_RS19060 0.63 -2.0 4,360,321 + DDA3937_RS19060 0.63 +0.4 4,360,456 + DDA3937_RS19060 0.71 +0.5 4,360,457 - DDA3937_RS19060 0.71 -2.1 4,360,457 - DDA3937_RS19060 0.71 -1.2 4,360,478 + DDA3937_RS19060 0.73 +0.2 4,360,479 - DDA3937_RS19060 0.73 -1.1 4,360,480 + DDA3937_RS19060 0.73 +0.3 4,360,480 + DDA3937_RS19060 0.73 +0.4 4,360,480 + DDA3937_RS19060 0.73 +0.9 4,360,480 + DDA3937_RS19060 0.73 -0.3 4,360,481 - DDA3937_RS19060 0.73 +0.6 4,360,481 - DDA3937_RS19060 0.73 -1.2 4,360,481 - DDA3937_RS19060 0.73 -0.3 4,360,481 - DDA3937_RS19060 0.73 +0.4 4,360,481 - DDA3937_RS19060 0.73 +0.1 4,360,481 - DDA3937_RS19060 0.73 +1.1 4,360,481 - DDA3937_RS19060 0.73 +0.8 4,360,575 - DDA3937_RS19060 0.79 +0.8 4,360,604 + DDA3937_RS19060 0.81 -0.2 4,360,878 - +0.0 4,360,997 + -0.8 4,360,997 + +0.1 4,360,997 + -0.3 4,360,998 - +0.7 4,360,998 - -1.4 4,360,998 - +0.7 4,360,998 - -0.9 4,360,998 - +1.0 4,360,998 - +0.7 4,361,049 + -1.4 4,361,083 - -0.1 4,361,088 + +1.0 4,361,106 - -0.5 4,361,106 - +0.7 4,361,143 + +0.3 4,361,186 - +0.8 4,361,240 - +0.4 4,361,274 + -1.2 4,361,275 - -1.0 4,361,275 - -2.0 4,361,315 - DDA3937_RS19065 0.10 -3.0 4,361,361 + DDA3937_RS19065 0.15 -3.6 4,361,361 + DDA3937_RS19065 0.15 -1.7 4,361,362 - DDA3937_RS19065 0.15 -1.7 4,361,383 + DDA3937_RS19065 0.18 -1.5 4,361,398 - DDA3937_RS19065 0.19 -1.2 4,361,437 - DDA3937_RS19065 0.23 -0.5 4,361,490 + DDA3937_RS19065 0.29 -0.5 4,361,491 - DDA3937_RS19065 0.29 -4.3 4,361,635 + DDA3937_RS19065 0.45 -2.6 4,361,635 + DDA3937_RS19065 0.45 -2.9 4,361,635 + DDA3937_RS19065 0.45 -1.9 4,361,636 - DDA3937_RS19065 0.45 -1.2 4,361,646 + DDA3937_RS19065 0.46 -3.2 4,361,647 - DDA3937_RS19065 0.46 -0.1 4,361,647 - DDA3937_RS19065 0.46 -1.9 4,361,647 - DDA3937_RS19065 0.46 -2.3 4,361,647 - DDA3937_RS19065 0.46 +0.1 4,361,691 + DDA3937_RS19065 0.51 -2.2 4,361,691 + DDA3937_RS19065 0.51 -1.6 4,361,692 - DDA3937_RS19065 0.51 -2.1 4,361,692 - DDA3937_RS19065 0.51 -0.5 4,361,692 - DDA3937_RS19065 0.51 -1.1 4,361,692 - DDA3937_RS19065 0.51 -0.5 4,361,737 + DDA3937_RS19065 0.56 -1.0 4,361,737 + DDA3937_RS19065 0.56 -4.0 4,361,737 + DDA3937_RS19065 0.56 -2.8 4,361,738 - DDA3937_RS19065 0.56 +0.9 4,361,790 + DDA3937_RS19065 0.61 +0.1 4,361,790 + DDA3937_RS19065 0.61 -3.4 4,361,790 + DDA3937_RS19065 0.61 -3.0 4,361,791 - DDA3937_RS19065 0.62 -1.9 4,361,791 - DDA3937_RS19065 0.62 -4.4 4,361,795 + DDA3937_RS19065 0.62 -3.4 4,361,795 + DDA3937_RS19065 0.62 -2.9 4,361,795 + DDA3937_RS19065 0.62 -0.2 4,361,795 + DDA3937_RS19065 0.62 +1.0 4,361,795 + DDA3937_RS19065 0.62 -1.7 4,361,795 + DDA3937_RS19065 0.62 -1.5 4,361,796 - DDA3937_RS19065 0.62 -0.2 4,361,796 - DDA3937_RS19065 0.62 -2.9 4,361,796 - DDA3937_RS19065 0.62 -0.9 4,361,796 - DDA3937_RS19065 0.62 -1.4 4,361,796 - DDA3937_RS19065 0.62 -0.5 4,361,796 - DDA3937_RS19065 0.62 +1.1 4,361,985 - DDA3937_RS19065 0.82 -4.4 4,362,025 + DDA3937_RS19065 0.87 -3.4 4,362,026 - DDA3937_RS19065 0.87 -2.1 4,362,026 - DDA3937_RS19065 0.87 -2.4 4,362,029 + DDA3937_RS19065 0.87 -4.5 4,362,029 + DDA3937_RS19065 0.87 -0.5 4,362,029 + DDA3937_RS19065 0.87 -2.2 4,362,029 + DDA3937_RS19065 0.87 -3.5 4,362,030 - DDA3937_RS19065 0.87 -0.9 4,362,030 - DDA3937_RS19065 0.87 -3.3 4,362,035 + DDA3937_RS19065 0.88 -0.7 4,362,035 + DDA3937_RS19065 0.88 -1.1 4,362,036 - DDA3937_RS19065 0.88 -3.8 4,362,149 - -2.5 4,362,154 + +0.2 4,362,154 + -1.6 4,362,155 - -0.9 4,362,155 - +2.7 4,362,155 - -0.9 4,362,155 - -1.5 4,362,155 - -3.1 4,362,155 - -3.3 4,362,243 - -0.5 4,362,283 + +0.3 4,362,283 + +0.5 4,362,283 + +0.7 4,362,283 + -1.2 4,362,283 + +0.1 4,362,284 - -0.9 4,362,284 - -1.7 4,362,284 - +0.5 4,362,284 - +0.8 4,362,286 - +0.4 4,362,295 + +0.3 4,362,301 - -0.9 4,362,301 - +2.3 4,362,307 + +0.1 4,362,307 + -0.5 4,362,308 - +0.8 4,362,335 + -0.8 4,362,335 + -1.3 4,362,336 - +0.0 4,362,336 - +0.3 4,362,379 + +2.0 4,362,390 + +0.3 4,362,390 + -0.7 4,362,390 + -0.4 4,362,391 - +1.3 4,362,391 - -2.4 4,362,391 - +2.0 4,362,396 - +1.0 4,362,396 - -1.8 4,362,474 - -0.3 4,362,474 - +0.8 4,362,575 - -0.0
Or see this region's nucleotide sequence