Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS17535 and DDA3937_RS17540 are separated by 250 nucleotides DDA3937_RS17540 and DDA3937_RS17545 are separated by 48 nucleotides
DDA3937_RS17535: DDA3937_RS17535 - Lrp/AsnC family transcriptional regulator, at 3,987,687 to 3,988,163
_RS17535
DDA3937_RS17540: DDA3937_RS17540 - YitT family protein, at 3,988,414 to 3,989,028
_RS17540
DDA3937_RS17545: DDA3937_RS17545 - aspartate/tyrosine/aromatic aminotransferase, at 3,989,077 to 3,990,270
_RS17545
Position (kb)
3989
3990
3991 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3988.199 kb on + strand at 3988.203 kb on + strand at 3988.203 kb on + strand at 3988.203 kb on + strand at 3988.204 kb on - strand at 3988.204 kb on - strand at 3988.249 kb on + strand at 3988.250 kb on - strand at 3988.257 kb on - strand at 3988.306 kb on - strand at 3988.343 kb on + strand at 3988.344 kb on - strand at 3988.344 kb on - strand at 3988.344 kb on - strand at 3988.386 kb on + strand at 3988.386 kb on + strand at 3988.386 kb on + strand at 3988.387 kb on - strand at 3988.464 kb on + strand at 3988.464 kb on + strand at 3988.464 kb on + strand at 3988.465 kb on - strand at 3988.465 kb on - strand at 3988.465 kb on - strand at 3988.465 kb on - strand at 3988.510 kb on - strand, within DDA3937_RS17540 at 3988.573 kb on + strand, within DDA3937_RS17540 at 3988.627 kb on + strand, within DDA3937_RS17540 at 3988.631 kb on - strand, within DDA3937_RS17540 at 3988.631 kb on - strand, within DDA3937_RS17540 at 3988.647 kb on + strand, within DDA3937_RS17540 at 3988.647 kb on + strand, within DDA3937_RS17540 at 3988.742 kb on + strand, within DDA3937_RS17540 at 3988.754 kb on - strand, within DDA3937_RS17540 at 3988.780 kb on - strand, within DDA3937_RS17540 at 3988.802 kb on + strand, within DDA3937_RS17540 at 3988.802 kb on + strand, within DDA3937_RS17540 at 3988.803 kb on - strand, within DDA3937_RS17540 at 3988.803 kb on - strand, within DDA3937_RS17540 at 3988.803 kb on - strand, within DDA3937_RS17540 at 3988.836 kb on + strand, within DDA3937_RS17540 at 3988.837 kb on - strand, within DDA3937_RS17540 at 3988.849 kb on + strand, within DDA3937_RS17540 at 3988.849 kb on + strand, within DDA3937_RS17540 at 3988.850 kb on - strand, within DDA3937_RS17540 at 3988.853 kb on + strand, within DDA3937_RS17540 at 3988.854 kb on - strand, within DDA3937_RS17540 at 3988.854 kb on - strand, within DDA3937_RS17540 at 3988.860 kb on + strand, within DDA3937_RS17540 at 3988.861 kb on - strand, within DDA3937_RS17540 at 3988.904 kb on + strand, within DDA3937_RS17540 at 3988.904 kb on + strand, within DDA3937_RS17540 at 3988.904 kb on + strand, within DDA3937_RS17540 at 3988.904 kb on + strand at 3988.905 kb on - strand, within DDA3937_RS17540 at 3988.905 kb on - strand, within DDA3937_RS17540 at 3988.935 kb on - strand, within DDA3937_RS17540 at 3988.941 kb on - strand, within DDA3937_RS17540 at 3989.019 kb on + strand at 3989.019 kb on + strand at 3989.019 kb on + strand at 3989.020 kb on - strand at 3989.020 kb on - strand at 3989.020 kb on - strand at 3989.026 kb on + strand at 3989.027 kb on - strand at 3989.027 kb on - strand at 3989.027 kb on - strand at 3989.054 kb on + strand at 3989.054 kb on + strand at 3989.054 kb on + strand at 3989.056 kb on + strand at 3989.056 kb on + strand at 3989.056 kb on + strand at 3989.099 kb on - strand at 3989.182 kb on + strand at 3989.182 kb on + strand at 3989.202 kb on + strand, within DDA3937_RS17545 at 3989.203 kb on - strand, within DDA3937_RS17545 at 3989.272 kb on + strand, within DDA3937_RS17545 at 3989.428 kb on + strand, within DDA3937_RS17545 at 3989.429 kb on - strand, within DDA3937_RS17545 at 3989.429 kb on - strand, within DDA3937_RS17545 at 3989.518 kb on + strand, within DDA3937_RS17545 at 3989.524 kb on + strand at 3989.525 kb on - strand, within DDA3937_RS17545 at 3989.525 kb on - strand, within DDA3937_RS17545 at 3989.719 kb on + strand, within DDA3937_RS17545 at 3989.830 kb on + strand, within DDA3937_RS17545 at 3989.830 kb on + strand, within DDA3937_RS17545 at 3989.926 kb on + strand at 3989.927 kb on - strand, within DDA3937_RS17545 at 3990.127 kb on + strand at 3990.264 kb on - strand at 3990.268 kb on + strand at 3990.268 kb on + strand at 3990.268 kb on + strand at 3990.268 kb on + strand at 3990.269 kb on - strand at 3990.269 kb on - strand at 3990.269 kb on - strand at 3990.269 kb on - strand at 3990.273 kb on + strand at 3990.274 kb on - strand at 3990.397 kb on + strand at 3990.397 kb on + strand at 3990.397 kb on + strand at 3990.397 kb on + strand at 3990.397 kb on + strand at 3990.398 kb on - strand at 3990.401 kb on + strand at 3990.401 kb on + strand at 3990.413 kb on + strand at 3990.414 kb on - strand at 3990.450 kb on + strand at 3990.450 kb on + strand at 3990.450 kb on + strand at 3990.450 kb on + strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.451 kb on - strand at 3990.537 kb on + strand at 3990.737 kb on + strand at 3990.791 kb on + strand at 3990.791 kb on + strand at 3990.791 kb on + strand at 3990.791 kb on + strand at 3990.791 kb on + strand at 3990.791 kb on + strand at 3990.792 kb on - strand at 3990.792 kb on - strand at 3990.792 kb on - strand at 3990.792 kb on - strand at 3990.825 kb on - strand at 3990.884 kb on + strand at 3990.884 kb on + strand at 3990.885 kb on - strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.918 kb on + strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.919 kb on - strand at 3990.944 kb on + strand at 3990.944 kb on + strand at 3990.945 kb on - strand at 3990.945 kb on - strand at 3990.953 kb on + strand at 3990.953 kb on + strand at 3990.974 kb on + strand at 3991.005 kb on - strand at 3991.005 kb on - strand at 3991.005 kb on - strand at 3991.013 kb on + strand at 3991.014 kb on - strand at 3991.072 kb on + strand at 3991.073 kb on + strand at 3991.073 kb on + strand at 3991.074 kb on - strand at 3991.074 kb on - strand at 3991.097 kb on + strand at 3991.098 kb on - strand at 3991.124 kb on + strand at 3991.125 kb on - strand at 3991.133 kb on + strand at 3991.193 kb on + strand at 3991.194 kb on - strand at 3991.194 kb on - strand at 3991.215 kb on - strand at 3991.215 kb on - strand at 3991.244 kb on + strand at 3991.244 kb on + strand at 3991.253 kb on + strand at 3991.254 kb on - strand at 3991.254 kb on - strand at 3991.254 kb on - strand at 3991.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,988,199 + +0.1 3,988,203 + -1.5 3,988,203 + -0.8 3,988,203 + -0.6 3,988,204 - +0.0 3,988,204 - -2.0 3,988,249 + +0.3 3,988,250 - +1.8 3,988,257 - +0.3 3,988,306 - +1.0 3,988,343 + -0.4 3,988,344 - -0.8 3,988,344 - -2.0 3,988,344 - +0.0 3,988,386 + -1.3 3,988,386 + -0.3 3,988,386 + +0.4 3,988,387 - -2.4 3,988,464 + +0.8 3,988,464 + -0.7 3,988,464 + +1.6 3,988,465 - +0.3 3,988,465 - +0.2 3,988,465 - +0.7 3,988,465 - +1.0 3,988,510 - DDA3937_RS17540 0.16 +0.3 3,988,573 + DDA3937_RS17540 0.26 -0.1 3,988,627 + DDA3937_RS17540 0.35 -1.8 3,988,631 - DDA3937_RS17540 0.35 +0.0 3,988,631 - DDA3937_RS17540 0.35 -0.4 3,988,647 + DDA3937_RS17540 0.38 +0.1 3,988,647 + DDA3937_RS17540 0.38 +0.1 3,988,742 + DDA3937_RS17540 0.53 +0.0 3,988,754 - DDA3937_RS17540 0.55 +0.2 3,988,780 - DDA3937_RS17540 0.60 -1.3 3,988,802 + DDA3937_RS17540 0.63 +0.6 3,988,802 + DDA3937_RS17540 0.63 +1.7 3,988,803 - DDA3937_RS17540 0.63 +0.4 3,988,803 - DDA3937_RS17540 0.63 +1.6 3,988,803 - DDA3937_RS17540 0.63 -0.1 3,988,836 + DDA3937_RS17540 0.69 +0.0 3,988,837 - DDA3937_RS17540 0.69 -1.0 3,988,849 + DDA3937_RS17540 0.71 -0.3 3,988,849 + DDA3937_RS17540 0.71 +0.3 3,988,850 - DDA3937_RS17540 0.71 -1.8 3,988,853 + DDA3937_RS17540 0.71 -0.4 3,988,854 - DDA3937_RS17540 0.72 +0.7 3,988,854 - DDA3937_RS17540 0.72 -0.6 3,988,860 + DDA3937_RS17540 0.73 -0.6 3,988,861 - DDA3937_RS17540 0.73 -0.1 3,988,904 + DDA3937_RS17540 0.80 +0.7 3,988,904 + DDA3937_RS17540 0.80 -1.4 3,988,904 + DDA3937_RS17540 0.80 +0.0 3,988,904 + +0.0 3,988,905 - DDA3937_RS17540 0.80 -0.4 3,988,905 - DDA3937_RS17540 0.80 +0.3 3,988,935 - DDA3937_RS17540 0.85 +1.1 3,988,941 - DDA3937_RS17540 0.86 +2.1 3,989,019 + +0.0 3,989,019 + -0.5 3,989,019 + -1.1 3,989,020 - -0.1 3,989,020 - -0.1 3,989,020 - -0.7 3,989,026 + -2.1 3,989,027 - -0.3 3,989,027 - -1.3 3,989,027 - +0.5 3,989,054 + +0.2 3,989,054 + -1.2 3,989,054 + -0.2 3,989,056 + +0.6 3,989,056 + +0.3 3,989,056 + -1.3 3,989,099 - -1.1 3,989,182 + -1.6 3,989,182 + -1.3 3,989,202 + DDA3937_RS17545 0.10 +0.0 3,989,203 - DDA3937_RS17545 0.11 -0.8 3,989,272 + DDA3937_RS17545 0.16 +1.1 3,989,428 + DDA3937_RS17545 0.29 +0.0 3,989,429 - DDA3937_RS17545 0.29 -2.0 3,989,429 - DDA3937_RS17545 0.29 -0.8 3,989,518 + DDA3937_RS17545 0.37 -1.3 3,989,524 + +2.0 3,989,525 - DDA3937_RS17545 0.38 -3.6 3,989,525 - DDA3937_RS17545 0.38 -0.4 3,989,719 + DDA3937_RS17545 0.54 +0.4 3,989,830 + DDA3937_RS17545 0.63 +0.5 3,989,830 + DDA3937_RS17545 0.63 -2.8 3,989,926 + +1.0 3,989,927 - DDA3937_RS17545 0.71 -0.6 3,990,127 + -1.0 3,990,264 - -1.1 3,990,268 + +0.5 3,990,268 + -1.6 3,990,268 + -0.0 3,990,268 + -0.1 3,990,269 - -0.2 3,990,269 - -0.9 3,990,269 - -1.3 3,990,269 - -1.6 3,990,273 + +2.0 3,990,274 - -0.5 3,990,397 + -0.7 3,990,397 + -0.4 3,990,397 + +0.3 3,990,397 + -0.5 3,990,397 + +0.0 3,990,398 - -0.6 3,990,401 + +0.6 3,990,401 + -2.6 3,990,413 + -2.9 3,990,414 - -2.1 3,990,450 + -0.0 3,990,450 + +0.6 3,990,450 + -0.6 3,990,450 + -0.0 3,990,451 - +1.9 3,990,451 - -0.1 3,990,451 - +2.0 3,990,451 - +0.4 3,990,451 - +0.2 3,990,451 - -2.1 3,990,451 - +0.8 3,990,451 - -2.6 3,990,451 - +0.9 3,990,537 + -1.8 3,990,737 + +0.0 3,990,791 + +1.7 3,990,791 + +0.3 3,990,791 + +0.5 3,990,791 + -0.0 3,990,791 + -0.6 3,990,791 + +1.3 3,990,792 - -1.3 3,990,792 - -4.2 3,990,792 - +0.7 3,990,792 - +0.2 3,990,825 - -1.9 3,990,884 + +0.4 3,990,884 + -2.8 3,990,885 - -1.0 3,990,918 + -0.6 3,990,918 + +0.4 3,990,918 + -0.2 3,990,918 + -0.2 3,990,918 + -1.6 3,990,918 + -1.0 3,990,918 + -0.1 3,990,918 + +0.6 3,990,918 + +0.6 3,990,919 - -0.1 3,990,919 - -0.7 3,990,919 - +1.1 3,990,919 - +0.2 3,990,919 - +1.0 3,990,919 - -1.1 3,990,919 - +0.9 3,990,919 - +0.2 3,990,944 + -1.0 3,990,944 + -0.6 3,990,945 - -0.8 3,990,945 - -0.8 3,990,953 + -0.2 3,990,953 + +0.0 3,990,974 + +1.1 3,991,005 - +1.2 3,991,005 - +1.3 3,991,005 - +0.2 3,991,013 + +0.3 3,991,014 - +0.1 3,991,072 + +0.5 3,991,073 + -1.3 3,991,073 + +0.1 3,991,074 - +0.2 3,991,074 - +0.0 3,991,097 + -0.5 3,991,098 - -0.1 3,991,124 + -0.9 3,991,125 - -2.1 3,991,133 + -1.0 3,991,193 + +0.4 3,991,194 - -1.1 3,991,194 - -2.2 3,991,215 - -3.1 3,991,215 - -1.1 3,991,244 + -1.8 3,991,244 + +0.0 3,991,253 + -0.4 3,991,254 - +1.0 3,991,254 - +1.5 3,991,254 - +0.4 3,991,254 - -0.8
Or see this region's nucleotide sequence