Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16940

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,847,923	-				-0.6
3,848,021	+				+3.1
3,848,025	+				+0.6
3,848,025	+				-1.4
3,848,025	+				-0.9
3,848,025	+				+0.9
3,848,026	-				-0.6
3,848,026	-				+0.5
3,848,026	-				-0.5
3,848,026	-				-0.4
3,848,026	-				-1.5
3,848,049	-				+4.1
3,848,053	+				-0.1
3,848,053	+				-1.2
3,848,053	+				-0.9
3,848,053	+				-1.1
3,848,054	-				-1.9
3,848,054	-				+0.8
3,848,061	-				-2.0
3,848,079	-				-1.6
3,848,237	+		DDA3937_RS16935	0.12	-2.5
3,848,260	+		DDA3937_RS16935	0.15	+0.4
3,848,260	+		DDA3937_RS16935	0.15	-2.2
3,848,261	-		DDA3937_RS16935	0.15	-1.1
3,848,284	+		DDA3937_RS16935	0.18	-0.6
3,848,285	-		DDA3937_RS16935	0.18	-2.0
3,848,480	+		DDA3937_RS16935	0.45	-1.5
3,848,588	+		DDA3937_RS16935	0.59	-0.6
3,848,626	+		DDA3937_RS16935	0.65	-1.6
3,848,627	-		DDA3937_RS16935	0.65	-1.1
3,848,879	+				-1.1
3,848,936	+				-0.8
3,848,936	+				-0.6
3,848,936	+				-0.7
3,848,937	-				-1.1
3,848,937	-				+1.2
3,849,072	-		DDA3937_RS16940	0.10	+0.6
3,849,198	-		DDA3937_RS16940	0.17	-1.1
3,849,198	-		DDA3937_RS16940	0.17	-3.1
3,849,227	+		DDA3937_RS16940	0.19	-1.2
3,849,228	-		DDA3937_RS16940	0.19	-1.3
3,849,361	+		DDA3937_RS16940	0.27	-1.5
3,849,362	-		DDA3937_RS16940	0.27	-0.5
3,849,506	-		DDA3937_RS16940	0.35	-1.9
3,849,551	+		DDA3937_RS16940	0.38	-0.1
3,849,551	+		DDA3937_RS16940	0.38	-1.1
3,849,552	-		DDA3937_RS16940	0.38	-1.9
3,849,604	+		DDA3937_RS16940	0.41	-1.1
3,849,688	+		DDA3937_RS16940	0.46	-2.2
3,849,689	-		DDA3937_RS16940	0.46	-1.4
3,849,689	-		DDA3937_RS16940	0.46	-1.8
3,849,771	-		DDA3937_RS16940	0.51	+1.9
3,849,785	+		DDA3937_RS16940	0.52	-1.4
3,849,785	+		DDA3937_RS16940	0.52	-1.1
3,849,785	+		DDA3937_RS16940	0.52	-0.1
3,849,786	-		DDA3937_RS16940	0.52	-1.7
3,849,787	+		DDA3937_RS16940	0.52	-0.1
3,849,787	+		DDA3937_RS16940	0.52	-1.1
3,849,787	+		DDA3937_RS16940	0.52	-2.1
3,849,787	+		DDA3937_RS16940	0.52	-3.0
3,849,788	-		DDA3937_RS16940	0.52	-1.3
3,849,788	-		DDA3937_RS16940	0.52	-1.9
3,849,861	+		DDA3937_RS16940	0.56	-1.4
3,849,861	+		DDA3937_RS16940	0.56	-2.0
3,849,861	+		DDA3937_RS16940	0.56	-0.8
3,849,861	+		DDA3937_RS16940	0.56	-0.6
3,849,861	+		DDA3937_RS16940	0.56	-2.5
3,849,861	+		DDA3937_RS16940	0.56	-1.4
3,849,861	+		DDA3937_RS16940	0.56	-0.3
3,849,862	-		DDA3937_RS16940	0.56	-0.8
3,849,862	-		DDA3937_RS16940	0.56	+0.2
3,849,862	-		DDA3937_RS16940	0.56	+1.0
3,849,862	-		DDA3937_RS16940	0.56	-2.5
3,849,862	-		DDA3937_RS16940	0.56	-2.2
3,849,862	-		DDA3937_RS16940	0.56	-1.1
3,849,862	-		DDA3937_RS16940	0.56	-0.4
3,849,866	+		DDA3937_RS16940	0.56	-1.4
3,849,866	+		DDA3937_RS16940	0.56	-0.6
3,849,867	-		DDA3937_RS16940	0.56	+1.3
3,849,887	+		DDA3937_RS16940	0.58	+0.9
3,849,982	+		DDA3937_RS16940	0.63	-1.5
3,849,983	-		DDA3937_RS16940	0.63	+0.9
3,849,983	-		DDA3937_RS16940	0.63	-0.6
3,849,983	-		DDA3937_RS16940	0.63	-0.3
3,850,102	+		DDA3937_RS16940	0.70	+0.2
3,850,102	+		DDA3937_RS16940	0.70	-0.1
3,850,103	-		DDA3937_RS16940	0.70	-0.9
3,850,103	-		DDA3937_RS16940	0.70	-0.2
3,850,288	+		DDA3937_RS16940	0.81	-1.1
3,850,289	-		DDA3937_RS16940	0.81	-0.9
3,850,441	+		DDA3937_RS16940	0.90	-0.6
3,850,441	+		DDA3937_RS16940	0.90	-0.1
3,850,441	+		DDA3937_RS16940	0.90	-1.4
3,850,441	+		DDA3937_RS16940	0.90	-2.9
3,850,441	+		DDA3937_RS16940	0.90	-0.6
3,850,441	+		DDA3937_RS16940	0.90	-2.1
3,850,441	+		DDA3937_RS16940	0.90	+0.5
3,850,441	+		DDA3937_RS16940	0.90	-0.9
3,850,442	-				-0.6
3,850,442	-				-1.5
3,850,442	-				-1.1
3,850,442	-				+0.6
3,850,442	-				-0.9
3,850,442	-				-0.1
3,850,535	-				-0.3
3,850,600	+				-1.1
3,850,600	+				-0.1
3,850,600	+				-1.2
3,850,614	+				-1.3
3,850,614	+				-2.6
3,850,614	+				-1.4
3,850,615	-				-2.1
3,850,615	-				-0.1
3,850,617	+				-1.8
3,850,617	+				+1.4
3,850,617	+				+0.9
3,850,617	+				-1.6
3,850,617	+				-2.5
3,850,618	-				-1.0
3,850,618	-				-1.1
3,850,618	-				-1.1
3,850,618	-				-1.4
3,850,618	-				+0.5
3,850,618	-				-1.2
3,850,727	+				+0.8
3,850,727	+				-1.1
3,850,728	-				-2.2
3,850,728	-				-0.9
3,850,764	+				-0.9
3,850,764	+				-0.3
3,850,764	+				-0.4
3,850,765	-				+0.9
3,850,765	-				-0.3
3,850,765	-				-0.6
3,850,765	-				-2.6
3,850,765	-				-0.9
3,850,765	-				-2.2
3,850,765	-				-0.9
3,850,765	-				-1.5
3,850,765	-				+1.8
3,850,765	-				-0.6
3,850,765	-				-1.1
3,850,765	-				-1.9
3,850,765	-				-3.1
3,850,768	+				-0.4
3,850,769	-				-1.2
3,850,769	-				-0.2
3,850,769	-				-0.5
3,850,769	-				-1.4
3,850,829	+		DDA3937_RS16945	0.12	-1.8
3,850,830	-		DDA3937_RS16945	0.12	-1.2
3,850,830	-		DDA3937_RS16945	0.12	-3.0
3,850,834	-		DDA3937_RS16945	0.12	-1.6
3,850,894	+		DDA3937_RS16945	0.15	-0.1
3,850,899	+		DDA3937_RS16945	0.16	+0.1
3,850,899	+		DDA3937_RS16945	0.16	-1.2
3,850,899	+		DDA3937_RS16945	0.16	-1.4
3,850,900	-		DDA3937_RS16945	0.16	-1.2
3,850,900	-		DDA3937_RS16945	0.16	-0.7
3,850,921	-		DDA3937_RS16945	0.17	-0.8
3,851,002	+		DDA3937_RS16945	0.21	-0.5
3,851,003	-		DDA3937_RS16945	0.21	-1.6
3,851,003	-		DDA3937_RS16945	0.21	-0.6
3,851,143	-		DDA3937_RS16945	0.29	-0.9
3,851,178	+		DDA3937_RS16945	0.31	-1.1
3,851,178	+		DDA3937_RS16945	0.31	-1.4
3,851,178	+		DDA3937_RS16945	0.31	-1.5
3,851,178	+		DDA3937_RS16945	0.31	-0.5
3,851,179	-		DDA3937_RS16945	0.31	-0.2
3,851,179	-		DDA3937_RS16945	0.31	-0.9
3,851,250	+		DDA3937_RS16945	0.35	-1.2
3,851,250	+		DDA3937_RS16945	0.35	-0.8
3,851,342	-		DDA3937_RS16945	0.40	-0.5
3,851,360	+		DDA3937_RS16945	0.41	-2.1
3,851,418	+		DDA3937_RS16945	0.44	-2.1
3,851,418	+		DDA3937_RS16945	0.44	-1.1
3,851,418	+		DDA3937_RS16945	0.44	-2.5
3,851,418	+		DDA3937_RS16945	0.44	-0.4
3,851,418	+		DDA3937_RS16945	0.44	-1.2
3,851,418	+		DDA3937_RS16945	0.44	-1.1
3,851,422	+		DDA3937_RS16945	0.44	-3.6
3,851,422	+		DDA3937_RS16945	0.44	-0.9
3,851,574	+		DDA3937_RS16945	0.53	-0.8
3,851,575	-		DDA3937_RS16945	0.53	-0.8
3,851,575	-		DDA3937_RS16945	0.53	-1.3