Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16925

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS16920 and DDA3937_RS16925 are separated by 11 nucleotidesDDA3937_RS16925 and DDA3937_RS16930 are separated by 16 nucleotides DDA3937_RS16920: DDA3937_RS16920 - sulfate adenylyltransferase subunit CysN, at 3,843,905 to 3,845,332 _RS16920 DDA3937_RS16925: DDA3937_RS16925 - sulfate adenylyltransferase subunit CysD, at 3,845,344 to 3,846,252 _RS16925 DDA3937_RS16930: DDA3937_RS16930 - uroporphyrinogen-III C-methyltransferase, at 3,846,269 to 3,847,690 _RS16930 Position (kb) 3845 3846 3847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3844.459 kb on + strand, within DDA3937_RS16920at 3844.578 kb on + strand, within DDA3937_RS16920at 3844.578 kb on + strand, within DDA3937_RS16920at 3844.578 kb on + strand, within DDA3937_RS16920at 3844.578 kb on + strand, within DDA3937_RS16920at 3844.579 kb on - strand, within DDA3937_RS16920at 3844.579 kb on - strand, within DDA3937_RS16920at 3844.579 kb on - strand, within DDA3937_RS16920at 3844.579 kb on - strand, within DDA3937_RS16920at 3844.665 kb on + strand, within DDA3937_RS16920at 3844.666 kb on - strand, within DDA3937_RS16920at 3844.666 kb on - strand, within DDA3937_RS16920at 3844.666 kb on - strand, within DDA3937_RS16920at 3844.732 kb on + strand, within DDA3937_RS16920at 3844.732 kb on + strand, within DDA3937_RS16920at 3844.733 kb on - strandat 3844.733 kb on - strand, within DDA3937_RS16920at 3844.733 kb on - strand, within DDA3937_RS16920at 3844.735 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.773 kb on + strand, within DDA3937_RS16920at 3844.774 kb on - strand, within DDA3937_RS16920at 3844.774 kb on - strand, within DDA3937_RS16920at 3844.774 kb on - strand, within DDA3937_RS16920at 3844.774 kb on - strand, within DDA3937_RS16920at 3844.774 kb on - strand, within DDA3937_RS16920at 3844.809 kb on + strand, within DDA3937_RS16920at 3844.809 kb on + strand, within DDA3937_RS16920at 3844.975 kb on - strand, within DDA3937_RS16920at 3844.975 kb on - strand, within DDA3937_RS16920at 3844.975 kb on - strand, within DDA3937_RS16920at 3844.975 kb on - strand, within DDA3937_RS16920at 3844.975 kb on - strand, within DDA3937_RS16920at 3845.031 kb on + strand, within DDA3937_RS16920at 3845.032 kb on - strand, within DDA3937_RS16920at 3845.153 kb on - strand, within DDA3937_RS16920at 3845.153 kb on - strand, within DDA3937_RS16920at 3845.153 kb on - strand, within DDA3937_RS16920at 3845.169 kb on + strand, within DDA3937_RS16920at 3845.169 kb on + strand, within DDA3937_RS16920at 3845.321 kb on - strandat 3845.321 kb on - strandat 3845.323 kb on + strandat 3845.323 kb on + strandat 3845.324 kb on - strandat 3845.324 kb on - strandat 3845.352 kb on - strandat 3845.512 kb on - strand, within DDA3937_RS16925at 3845.539 kb on + strand, within DDA3937_RS16925at 3845.539 kb on + strand, within DDA3937_RS16925at 3845.540 kb on - strand, within DDA3937_RS16925at 3845.627 kb on + strand, within DDA3937_RS16925at 3845.627 kb on + strand, within DDA3937_RS16925at 3845.627 kb on + strand, within DDA3937_RS16925at 3845.628 kb on - strand, within DDA3937_RS16925at 3845.628 kb on - strand, within DDA3937_RS16925at 3845.628 kb on - strand, within DDA3937_RS16925at 3845.628 kb on - strand, within DDA3937_RS16925at 3845.657 kb on + strand, within DDA3937_RS16925at 3845.657 kb on + strand, within DDA3937_RS16925at 3845.658 kb on - strand, within DDA3937_RS16925at 3845.658 kb on - strand, within DDA3937_RS16925at 3845.658 kb on - strand, within DDA3937_RS16925at 3845.663 kb on + strand, within DDA3937_RS16925at 3845.663 kb on + strand, within DDA3937_RS16925at 3845.664 kb on - strand, within DDA3937_RS16925at 3845.664 kb on - strand, within DDA3937_RS16925at 3845.673 kb on + strand, within DDA3937_RS16925at 3845.705 kb on - strand, within DDA3937_RS16925at 3845.739 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.741 kb on + strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.742 kb on - strand, within DDA3937_RS16925at 3845.807 kb on + strand, within DDA3937_RS16925at 3845.807 kb on + strand, within DDA3937_RS16925at 3845.807 kb on + strand, within DDA3937_RS16925at 3845.808 kb on - strand, within DDA3937_RS16925at 3845.808 kb on - strand, within DDA3937_RS16925at 3845.811 kb on + strand, within DDA3937_RS16925at 3845.811 kb on + strand, within DDA3937_RS16925at 3845.811 kb on + strand, within DDA3937_RS16925at 3845.811 kb on + strand, within DDA3937_RS16925at 3845.811 kb on + strand, within DDA3937_RS16925at 3845.812 kb on - strand, within DDA3937_RS16925at 3845.812 kb on - strand, within DDA3937_RS16925at 3845.812 kb on - strand, within DDA3937_RS16925at 3845.876 kb on + strand, within DDA3937_RS16925at 3845.877 kb on - strand, within DDA3937_RS16925at 3845.877 kb on - strand, within DDA3937_RS16925at 3845.877 kb on - strand, within DDA3937_RS16925at 3845.923 kb on - strand, within DDA3937_RS16925at 3845.923 kb on - strand, within DDA3937_RS16925at 3846.006 kb on - strand, within DDA3937_RS16925at 3846.006 kb on - strand, within DDA3937_RS16925at 3846.018 kb on + strand, within DDA3937_RS16925at 3846.019 kb on - strand, within DDA3937_RS16925at 3846.019 kb on - strand, within DDA3937_RS16925at 3846.036 kb on - strand, within DDA3937_RS16925at 3846.108 kb on + strand, within DDA3937_RS16925at 3846.152 kb on + strand, within DDA3937_RS16925at 3846.152 kb on + strand, within DDA3937_RS16925at 3846.153 kb on - strand, within DDA3937_RS16925at 3846.153 kb on - strand, within DDA3937_RS16925at 3846.153 kb on - strand, within DDA3937_RS16925at 3846.198 kb on + strandat 3846.198 kb on + strandat 3846.198 kb on + strandat 3846.199 kb on - strandat 3846.199 kb on - strandat 3846.199 kb on - strandat 3846.199 kb on - strandat 3846.204 kb on + strandat 3846.204 kb on + strandat 3846.204 kb on + strandat 3846.204 kb on + strandat 3846.204 kb on + strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.205 kb on - strandat 3846.226 kb on + strandat 3846.252 kb on + strandat 3846.258 kb on + strandat 3846.264 kb on + strandat 3846.265 kb on - strandat 3846.265 kb on - strandat 3846.371 kb on + strandat 3846.371 kb on + strandat 3846.484 kb on + strand, within DDA3937_RS16930at 3846.542 kb on - strand, within DDA3937_RS16930at 3846.547 kb on + strand, within DDA3937_RS16930at 3846.547 kb on + strand, within DDA3937_RS16930at 3846.547 kb on + strand, within DDA3937_RS16930at 3846.548 kb on - strand, within DDA3937_RS16930at 3846.548 kb on - strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.549 kb on + strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.550 kb on - strand, within DDA3937_RS16930at 3846.553 kb on + strand, within DDA3937_RS16930at 3846.554 kb on - strand, within DDA3937_RS16930at 3846.633 kb on - strand, within DDA3937_RS16930at 3846.678 kb on + strand, within DDA3937_RS16930at 3846.954 kb on + strand, within DDA3937_RS16930at 3846.955 kb on - strand, within DDA3937_RS16930at 3847.054 kb on + strand, within DDA3937_RS16930at 3847.055 kb on - strand, within DDA3937_RS16930at 3847.147 kb on + strand, within DDA3937_RS16930at 3847.147 kb on + strand, within DDA3937_RS16930at 3847.148 kb on - strand, within DDA3937_RS16930

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,844,459 + DDA3937_RS16920 0.39 -0.5
3,844,578 + DDA3937_RS16920 0.47 -0.4
3,844,578 + DDA3937_RS16920 0.47 -1.3
3,844,578 + DDA3937_RS16920 0.47 -0.4
3,844,578 + DDA3937_RS16920 0.47 -0.5
3,844,579 - DDA3937_RS16920 0.47 -0.1
3,844,579 - DDA3937_RS16920 0.47 -0.9
3,844,579 - DDA3937_RS16920 0.47 -1.5
3,844,579 - DDA3937_RS16920 0.47 -1.4
3,844,665 + DDA3937_RS16920 0.53 -0.1
3,844,666 - DDA3937_RS16920 0.53 -0.1
3,844,666 - DDA3937_RS16920 0.53 +0.9
3,844,666 - DDA3937_RS16920 0.53 -2.1
3,844,732 + DDA3937_RS16920 0.58 -2.4
3,844,732 + DDA3937_RS16920 0.58 -0.5
3,844,733 - -0.6
3,844,733 - DDA3937_RS16920 0.58 -1.9
3,844,733 - DDA3937_RS16920 0.58 -2.9
3,844,735 + DDA3937_RS16920 0.58 -0.1
3,844,773 + DDA3937_RS16920 0.61 -0.6
3,844,773 + DDA3937_RS16920 0.61 -1.1
3,844,773 + DDA3937_RS16920 0.61 -2.1
3,844,773 + DDA3937_RS16920 0.61 -1.9
3,844,773 + DDA3937_RS16920 0.61 -2.2
3,844,773 + DDA3937_RS16920 0.61 +1.3
3,844,773 + DDA3937_RS16920 0.61 -0.8
3,844,774 - DDA3937_RS16920 0.61 -1.3
3,844,774 - DDA3937_RS16920 0.61 -1.2
3,844,774 - DDA3937_RS16920 0.61 -0.6
3,844,774 - DDA3937_RS16920 0.61 -0.7
3,844,774 - DDA3937_RS16920 0.61 -2.4
3,844,809 + DDA3937_RS16920 0.63 -1.2
3,844,809 + DDA3937_RS16920 0.63 -2.9
3,844,975 - DDA3937_RS16920 0.75 -1.2
3,844,975 - DDA3937_RS16920 0.75 +0.2
3,844,975 - DDA3937_RS16920 0.75 -1.1
3,844,975 - DDA3937_RS16920 0.75 -0.6
3,844,975 - DDA3937_RS16920 0.75 -1.4
3,845,031 + DDA3937_RS16920 0.79 -2.0
3,845,032 - DDA3937_RS16920 0.79 -2.2
3,845,153 - DDA3937_RS16920 0.87 -0.6
3,845,153 - DDA3937_RS16920 0.87 -0.6
3,845,153 - DDA3937_RS16920 0.87 -0.1
3,845,169 + DDA3937_RS16920 0.89 -3.0
3,845,169 + DDA3937_RS16920 0.89 -1.6
3,845,321 - -0.1
3,845,321 - -0.1
3,845,323 + -1.0
3,845,323 + -0.5
3,845,324 - -0.8
3,845,324 - -1.5
3,845,352 - -1.8
3,845,512 - DDA3937_RS16925 0.18 -1.9
3,845,539 + DDA3937_RS16925 0.21 -2.1
3,845,539 + DDA3937_RS16925 0.21 -0.9
3,845,540 - DDA3937_RS16925 0.22 -0.6
3,845,627 + DDA3937_RS16925 0.31 -0.5
3,845,627 + DDA3937_RS16925 0.31 -0.1
3,845,627 + DDA3937_RS16925 0.31 -1.2
3,845,628 - DDA3937_RS16925 0.31 -2.6
3,845,628 - DDA3937_RS16925 0.31 -1.1
3,845,628 - DDA3937_RS16925 0.31 -1.2
3,845,628 - DDA3937_RS16925 0.31 -2.2
3,845,657 + DDA3937_RS16925 0.34 -1.2
3,845,657 + DDA3937_RS16925 0.34 -2.5
3,845,658 - DDA3937_RS16925 0.35 -1.6
3,845,658 - DDA3937_RS16925 0.35 -1.2
3,845,658 - DDA3937_RS16925 0.35 +0.2
3,845,663 + DDA3937_RS16925 0.35 -0.9
3,845,663 + DDA3937_RS16925 0.35 -1.2
3,845,664 - DDA3937_RS16925 0.35 -1.1
3,845,664 - DDA3937_RS16925 0.35 -0.9
3,845,673 + DDA3937_RS16925 0.36 -3.7
3,845,705 - DDA3937_RS16925 0.40 -3.5
3,845,739 + DDA3937_RS16925 0.43 -0.1
3,845,741 + DDA3937_RS16925 0.44 -0.4
3,845,741 + DDA3937_RS16925 0.44 -1.1
3,845,741 + DDA3937_RS16925 0.44 -0.1
3,845,741 + DDA3937_RS16925 0.44 -0.9
3,845,741 + DDA3937_RS16925 0.44 -0.1
3,845,741 + DDA3937_RS16925 0.44 -1.0
3,845,741 + DDA3937_RS16925 0.44 -2.1
3,845,742 - DDA3937_RS16925 0.44 -2.2
3,845,742 - DDA3937_RS16925 0.44 -2.8
3,845,742 - DDA3937_RS16925 0.44 -1.6
3,845,742 - DDA3937_RS16925 0.44 -0.6
3,845,742 - DDA3937_RS16925 0.44 -1.1
3,845,742 - DDA3937_RS16925 0.44 -1.1
3,845,742 - DDA3937_RS16925 0.44 -2.6
3,845,807 + DDA3937_RS16925 0.51 -1.1
3,845,807 + DDA3937_RS16925 0.51 -2.1
3,845,807 + DDA3937_RS16925 0.51 +0.6
3,845,808 - DDA3937_RS16925 0.51 -1.9
3,845,808 - DDA3937_RS16925 0.51 -1.4
3,845,811 + DDA3937_RS16925 0.51 -0.3
3,845,811 + DDA3937_RS16925 0.51 -2.6
3,845,811 + DDA3937_RS16925 0.51 +0.4
3,845,811 + DDA3937_RS16925 0.51 -2.4
3,845,811 + DDA3937_RS16925 0.51 -2.5
3,845,812 - DDA3937_RS16925 0.51 -2.2
3,845,812 - DDA3937_RS16925 0.51 -1.4
3,845,812 - DDA3937_RS16925 0.51 -1.4
3,845,876 + DDA3937_RS16925 0.59 -2.0
3,845,877 - DDA3937_RS16925 0.59 +0.1
3,845,877 - DDA3937_RS16925 0.59 +0.4
3,845,877 - DDA3937_RS16925 0.59 -1.8
3,845,923 - DDA3937_RS16925 0.64 -4.0
3,845,923 - DDA3937_RS16925 0.64 -1.8
3,846,006 - DDA3937_RS16925 0.73 -3.3
3,846,006 - DDA3937_RS16925 0.73 -0.8
3,846,018 + DDA3937_RS16925 0.74 -2.6
3,846,019 - DDA3937_RS16925 0.74 +0.4
3,846,019 - DDA3937_RS16925 0.74 -0.8
3,846,036 - DDA3937_RS16925 0.76 -0.8
3,846,108 + DDA3937_RS16925 0.84 -0.8
3,846,152 + DDA3937_RS16925 0.89 -1.4
3,846,152 + DDA3937_RS16925 0.89 -0.6
3,846,153 - DDA3937_RS16925 0.89 -2.1
3,846,153 - DDA3937_RS16925 0.89 -2.4
3,846,153 - DDA3937_RS16925 0.89 +0.8
3,846,198 + -3.2
3,846,198 + +0.5
3,846,198 + -0.5
3,846,199 - -0.8
3,846,199 - -1.1
3,846,199 - -1.4
3,846,199 - -1.6
3,846,204 + +0.9
3,846,204 + +0.6
3,846,204 + -2.1
3,846,204 + -2.0
3,846,204 + -1.6
3,846,205 - -2.1
3,846,205 - -1.1
3,846,205 - -1.6
3,846,205 - -1.5
3,846,205 - -0.6
3,846,205 - -0.3
3,846,205 - -2.5
3,846,226 + -2.0
3,846,252 + -1.9
3,846,258 + -0.1
3,846,264 + -0.5
3,846,265 - -2.1
3,846,265 - -1.1
3,846,371 + -1.4
3,846,371 + -1.6
3,846,484 + DDA3937_RS16930 0.15 -0.1
3,846,542 - DDA3937_RS16930 0.19 -0.3
3,846,547 + DDA3937_RS16930 0.20 -0.9
3,846,547 + DDA3937_RS16930 0.20 -0.9
3,846,547 + DDA3937_RS16930 0.20 -1.4
3,846,548 - DDA3937_RS16930 0.20 -1.6
3,846,548 - DDA3937_RS16930 0.20 -1.6
3,846,549 + DDA3937_RS16930 0.20 -1.4
3,846,549 + DDA3937_RS16930 0.20 -0.6
3,846,549 + DDA3937_RS16930 0.20 -2.5
3,846,549 + DDA3937_RS16930 0.20 -1.8
3,846,549 + DDA3937_RS16930 0.20 -0.6
3,846,549 + DDA3937_RS16930 0.20 -0.5
3,846,549 + DDA3937_RS16930 0.20 -0.1
3,846,549 + DDA3937_RS16930 0.20 -1.0
3,846,549 + DDA3937_RS16930 0.20 -1.9
3,846,549 + DDA3937_RS16930 0.20 -1.6
3,846,549 + DDA3937_RS16930 0.20 -1.8
3,846,549 + DDA3937_RS16930 0.20 -1.8
3,846,549 + DDA3937_RS16930 0.20 -0.9
3,846,550 - DDA3937_RS16930 0.20 -3.2
3,846,550 - DDA3937_RS16930 0.20 -1.4
3,846,550 - DDA3937_RS16930 0.20 -1.8
3,846,550 - DDA3937_RS16930 0.20 -1.2
3,846,550 - DDA3937_RS16930 0.20 -0.1
3,846,550 - DDA3937_RS16930 0.20 -1.1
3,846,550 - DDA3937_RS16930 0.20 -1.9
3,846,550 - DDA3937_RS16930 0.20 -1.6
3,846,550 - DDA3937_RS16930 0.20 -1.2
3,846,550 - DDA3937_RS16930 0.20 -1.1
3,846,550 - DDA3937_RS16930 0.20 -0.6
3,846,550 - DDA3937_RS16930 0.20 +0.9
3,846,550 - DDA3937_RS16930 0.20 -1.2
3,846,550 - DDA3937_RS16930 0.20 -1.6
3,846,553 + DDA3937_RS16930 0.20 -0.5
3,846,554 - DDA3937_RS16930 0.20 -0.6
3,846,633 - DDA3937_RS16930 0.26 +0.4
3,846,678 + DDA3937_RS16930 0.29 -0.6
3,846,954 + DDA3937_RS16930 0.48 +0.6
3,846,955 - DDA3937_RS16930 0.48 +0.9
3,847,054 + DDA3937_RS16930 0.55 -1.1
3,847,055 - DDA3937_RS16930 0.55 -1.9
3,847,147 + DDA3937_RS16930 0.62 -1.2
3,847,147 + DDA3937_RS16930 0.62 -0.6
3,847,148 - DDA3937_RS16930 0.62 -1.4

Or see this region's nucleotide sequence