Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16740

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,808,275	+		DDA3937_RS16730	0.33	-0.5
3,808,276	-		DDA3937_RS16730	0.33	-0.1
3,808,276	-		DDA3937_RS16730	0.33	+0.4
3,808,299	+		DDA3937_RS16730	0.35	-1.9
3,808,300	-		DDA3937_RS16730	0.35	-0.6
3,808,338	-		DDA3937_RS16730	0.39	+1.1
3,808,422	-		DDA3937_RS16730	0.47	+0.5
3,808,509	+		DDA3937_RS16730	0.56	-0.9
3,808,509	+		DDA3937_RS16730	0.56	-0.3
3,808,510	-		DDA3937_RS16730	0.56	+0.8
3,808,543	-		DDA3937_RS16730	0.60	+0.9
3,808,543	-		DDA3937_RS16730	0.60	-0.5
3,808,554	-		DDA3937_RS16730	0.61	-0.4
3,808,554	-				-0.6
3,808,554	-				-0.9
3,808,564	+		DDA3937_RS16730	0.62	+0.4
3,808,565	-		DDA3937_RS16730	0.62	+1.1
3,808,592	-		DDA3937_RS16730	0.64	-0.6
3,808,592	-		DDA3937_RS16730	0.64	-2.1
3,808,592	-		DDA3937_RS16730	0.64	+1.8
3,808,688	+		DDA3937_RS16730	0.74	-1.6
3,808,689	-		DDA3937_RS16730	0.74	-1.1
3,808,701	+		DDA3937_RS16730	0.75	-0.0
3,808,721	+		DDA3937_RS16730	0.77	-1.9
3,808,721	+		DDA3937_RS16730	0.77	+0.1
3,808,722	-		DDA3937_RS16730	0.77	-0.1
3,808,722	-		DDA3937_RS16730	0.77	-0.7
3,808,722	-		DDA3937_RS16730	0.77	-1.6
3,808,722	-		DDA3937_RS16730	0.77	-1.4
3,808,920	-				-0.9
3,808,944	+				+0.1
3,808,944	+				+0.2
3,808,944	+				+0.3
3,808,944	+				-2.1
3,808,945	-				+0.9
3,808,945	-				-2.9
3,808,945	-				-1.2
3,808,945	-				-0.4
3,808,962	+				-0.8
3,809,091	+				+1.7
3,809,092	-				-0.6
3,809,100	-				-0.3
3,809,100	-				+1.4
3,809,122	+				+1.0
3,809,123	-				+0.7
3,809,125	+				-1.1
3,809,126	-				+0.6
3,809,126	-				-1.9
3,809,126	-				-0.8
3,809,179	+				+1.7
3,809,217	+				-0.4
3,809,218	-				-1.9
3,809,220	+				-1.7
3,809,225	+				+1.3
3,809,225	+				-1.1
3,809,225	+				+0.6
3,809,229	-				-0.3
3,809,245	+				+0.3
3,809,245	+				+0.5
3,809,274	+				+0.6
3,809,274	+				-0.7
3,809,274	+				-1.5
3,809,274	+				+0.9
3,809,274	+				-0.7
3,809,275	-				+0.9
3,809,275	-				-0.2
3,809,275	-				+1.5
3,809,275	-				-0.5
3,809,275	-				+0.3
3,809,277	+				-1.4
3,809,277	+				-1.2
3,809,316	-				-0.8
3,809,353	+				-0.1
3,809,353	+				-0.1
3,809,354	-				-1.9
3,809,354	-				-0.5
3,809,354	-				+0.6
3,809,354	-				-0.1
3,809,354	-				-0.7
3,809,356	+				-1.4
3,809,422	-		DDA3937_RS16740	0.13	-0.4
3,809,447	-		DDA3937_RS16740	0.15	-1.3
3,809,682	+				-1.1
3,809,770	+		DDA3937_RS16740	0.42	-0.7
3,809,770	+		DDA3937_RS16740	0.42	-0.1
3,809,771	-		DDA3937_RS16740	0.42	+1.1
3,809,853	+		DDA3937_RS16740	0.49	-1.1
3,809,853	+		DDA3937_RS16740	0.49	+0.3
3,809,853	+		DDA3937_RS16740	0.49	+1.5
3,809,854	-		DDA3937_RS16740	0.49	+0.2
3,809,854	-		DDA3937_RS16740	0.49	+0.3
3,809,854	-		DDA3937_RS16740	0.49	-1.5
3,809,854	-		DDA3937_RS16740	0.49	-1.1
3,809,854	-		DDA3937_RS16740	0.49	-0.1
3,809,867	+		DDA3937_RS16740	0.50	+1.3
3,809,909	+		DDA3937_RS16740	0.54	+0.6
3,809,914	-		DDA3937_RS16740	0.54	-0.7
3,809,914	-		DDA3937_RS16740	0.54	+0.8
3,809,947	-		DDA3937_RS16740	0.57	+0.9
3,809,998	+		DDA3937_RS16740	0.61	-1.4
3,809,999	-		DDA3937_RS16740	0.61	-1.4
3,810,005	-		DDA3937_RS16740	0.62	+0.9
3,810,005	-		DDA3937_RS16740	0.62	+1.7
3,810,005	-		DDA3937_RS16740	0.62	+2.8
3,810,017	+		DDA3937_RS16740	0.63	+1.0
3,810,216	-		DDA3937_RS16740	0.79	+0.2
3,810,255	+		DDA3937_RS16740	0.82	+1.7
3,810,255	+		DDA3937_RS16740	0.82	+0.7
3,810,256	-		DDA3937_RS16740	0.82	+0.8
3,810,292	+		DDA3937_RS16740	0.85	-0.7
3,810,292	+		DDA3937_RS16740	0.85	+0.1
3,810,292	+		DDA3937_RS16740	0.85	+1.3
3,810,304	+		DDA3937_RS16740	0.86	+1.1
3,810,304	+		DDA3937_RS16740	0.86	+2.7
3,810,304	+		DDA3937_RS16740	0.86	+0.7
3,810,304	+		DDA3937_RS16740	0.86	+1.1
3,810,305	-		DDA3937_RS16740	0.86	+0.1
3,810,305	-		DDA3937_RS16740	0.86	-1.9
3,810,343	+		DDA3937_RS16740	0.90	+1.3
3,810,343	+		DDA3937_RS16740	0.90	+1.1
3,810,349	+				+1.5
3,810,350	-				+0.3
3,810,350	-				-0.7
3,810,395	+				+1.2
3,810,395	+				+0.0
3,810,395	+				+1.2
3,810,395	+				-0.4
3,810,396	-				-2.8
3,810,396	-				-1.4
3,810,396	-				+0.9
3,810,396	-				-1.1
3,810,396	-				+0.5
3,810,396	-				+0.9
3,810,470	-				-1.1
3,810,494	+				+0.3
3,810,548	+				+0.9
3,810,679	+		DDA3937_RS16745	0.15	+0.5
3,810,679	+		DDA3937_RS16745	0.15	+1.4
3,810,680	-		DDA3937_RS16745	0.15	-0.9
3,810,684	-		DDA3937_RS16745	0.15	-2.5
3,810,684	-		DDA3937_RS16745	0.15	+0.4
3,810,767	-		DDA3937_RS16745	0.26	+0.3
3,810,767	-		DDA3937_RS16745	0.26	-1.0
3,810,800	+		DDA3937_RS16745	0.30	+1.9
3,810,819	+		DDA3937_RS16745	0.33	+1.8
3,810,820	-		DDA3937_RS16745	0.33	-1.4
3,810,820	-		DDA3937_RS16745	0.33	-0.3
3,810,857	+		DDA3937_RS16745	0.38	-0.7
3,810,858	-		DDA3937_RS16745	0.38	+0.5
3,810,858	-		DDA3937_RS16745	0.38	-0.6
3,810,872	-		DDA3937_RS16745	0.40	-2.2
3,810,872	-		DDA3937_RS16745	0.40	-1.4
3,810,897	+		DDA3937_RS16745	0.43	+0.5
3,810,897	+		DDA3937_RS16745	0.43	+0.8
3,810,897	+		DDA3937_RS16745	0.43	+3.4
3,810,898	-		DDA3937_RS16745	0.43	-0.1
3,810,898	-		DDA3937_RS16745	0.43	+1.4
3,810,898	-		DDA3937_RS16745	0.43	-0.5
3,810,898	-		DDA3937_RS16745	0.43	-1.2
3,810,991	-		DDA3937_RS16745	0.56	-1.4
3,811,077	-		DDA3937_RS16745	0.67	-1.1
3,811,131	+		DDA3937_RS16745	0.74	+1.7
3,811,236	-		DDA3937_RS16745	0.88	-1.4
3,811,331	+				+1.7
3,811,331	+				+1.5
3,811,332	-				-1.7
3,811,339	+				+0.5
3,811,355	-				-1.9
3,811,371	-		DDA3937_RS16750	0.13	-1.0