Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16555

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,769,153	+		DDA3937_RS16545	0.86	+0.3
3,769,153	+		DDA3937_RS16545	0.86	+1.2
3,769,154	-		DDA3937_RS16545	0.86	-1.1
3,769,185	+		DDA3937_RS16545	0.89	-1.9
3,769,185	+				-1.4
3,769,185	+		DDA3937_RS16545	0.89	-1.9
3,769,186	-		DDA3937_RS16545	0.89	-0.1
3,769,186	-		DDA3937_RS16545	0.89	+0.4
3,769,204	+				-1.4
3,769,204	+				-1.6
3,769,205	-				-0.7
3,769,261	+				-1.4
3,769,261	+				-0.9
3,769,403	+				-1.1
3,769,404	-		DDA3937_RS16550	0.13	+0.6
3,769,404	-		DDA3937_RS16550	0.13	+2.5
3,769,513	+		DDA3937_RS16550	0.34	-1.5
3,769,514	-		DDA3937_RS16550	0.34	+0.4
3,769,559	-		DDA3937_RS16550	0.42	+2.0
3,769,616	+		DDA3937_RS16550	0.53	+0.9
3,769,617	-		DDA3937_RS16550	0.53	+1.5
3,769,726	+		DDA3937_RS16550	0.73	-0.7
3,769,726	+		DDA3937_RS16550	0.73	-0.2
3,769,848	+				+0.2
3,769,849	-				+0.4
3,769,849	-				+0.0
3,769,904	+				+1.3
3,769,905	-				+0.4
3,769,905	-				+1.3
3,769,905	-				+0.0
3,770,032	-				+0.3
3,770,063	-				+0.2
3,770,080	+				+0.9
3,770,229	+		DDA3937_RS16555	0.21	+0.1
3,770,229	+		DDA3937_RS16555	0.21	-2.0
3,770,230	-		DDA3937_RS16555	0.21	-1.1
3,770,230	-		DDA3937_RS16555	0.21	+0.0
3,770,364	+		DDA3937_RS16555	0.31	-2.9
3,770,364	+		DDA3937_RS16555	0.31	+0.3
3,770,365	-		DDA3937_RS16555	0.32	-0.9
3,770,471	+		DDA3937_RS16555	0.40	-0.9
3,770,471	+		DDA3937_RS16555	0.40	-2.7
3,770,471	+		DDA3937_RS16555	0.40	-2.3
3,770,472	-		DDA3937_RS16555	0.40	-1.4
3,770,565	+		DDA3937_RS16555	0.48	+0.2
3,770,565	+		DDA3937_RS16555	0.48	-2.1
3,770,565	+		DDA3937_RS16555	0.48	+1.2
3,770,566	-		DDA3937_RS16555	0.48	+0.4
3,770,566	-		DDA3937_RS16555	0.48	+0.2
3,770,586	+		DDA3937_RS16555	0.49	-2.1
3,770,586	+		DDA3937_RS16555	0.49	+0.1
3,770,586	+		DDA3937_RS16555	0.49	-1.9
3,770,587	-		DDA3937_RS16555	0.49	+0.5
3,770,587	-		DDA3937_RS16555	0.49	+1.8
3,770,603	-		DDA3937_RS16555	0.51	-1.9
3,770,624	+		DDA3937_RS16555	0.52	-0.1
3,770,721	+		DDA3937_RS16555	0.60	-1.6
3,770,722	-		DDA3937_RS16555	0.60	+0.9
3,770,749	-		DDA3937_RS16555	0.62	+1.1
3,770,823	+		DDA3937_RS16555	0.68	-0.1
3,770,824	-		DDA3937_RS16555	0.68	-0.1
3,770,824	-		DDA3937_RS16555	0.68	+0.8
3,770,824	-		DDA3937_RS16555	0.68	-1.5
3,770,903	-		DDA3937_RS16555	0.75	-0.4
3,770,922	+		DDA3937_RS16555	0.76	-1.9
3,770,922	+		DDA3937_RS16555	0.76	-1.8
3,770,922	+		DDA3937_RS16555	0.76	+0.4
3,770,922	+		DDA3937_RS16555	0.76	-0.9
3,770,922	+		DDA3937_RS16555	0.76	-0.4
3,770,922	+		DDA3937_RS16555	0.76	+0.4
3,770,922	+		DDA3937_RS16555	0.76	-0.3
3,770,922	+		DDA3937_RS16555	0.76	-1.3
3,770,922	+		DDA3937_RS16555	0.76	-0.1
3,770,922	+		DDA3937_RS16555	0.76	-1.4
3,770,923	-		DDA3937_RS16555	0.76	-0.9
3,770,923	-		DDA3937_RS16555	0.76	-1.1
3,770,923	-		DDA3937_RS16555	0.76	+2.2
3,770,923	-		DDA3937_RS16555	0.76	-1.4
3,770,923	-		DDA3937_RS16555	0.76	-0.7
3,770,923	-		DDA3937_RS16555	0.76	-0.3
3,770,923	-		DDA3937_RS16555	0.76	-1.0
3,770,923	-		DDA3937_RS16555	0.76	+1.4
3,771,158	-				-2.4
3,771,176	+				+0.1
3,771,176	+				+0.6
3,771,177	-				+0.4
3,771,255	+				+0.3
3,771,256	-				-0.3
3,771,367	+				+0.9
3,771,368	-				-0.2
3,771,368	-				-0.1
3,771,439	+		DDA3937_RS16560	0.14	+1.1
3,771,470	+		DDA3937_RS16560	0.20	-2.1
3,771,471	-		DDA3937_RS16560	0.20	+1.5
3,771,502	+		DDA3937_RS16560	0.27	-0.3
3,771,502	+		DDA3937_RS16560	0.27	+0.3
3,771,503	-		DDA3937_RS16560	0.27	-0.8
3,771,503	-		DDA3937_RS16560	0.27	-2.2
3,771,505	+		DDA3937_RS16560	0.28	+2.6
3,771,505	+		DDA3937_RS16560	0.28	-0.5
3,771,506	-		DDA3937_RS16560	0.28	-0.7
3,771,506	-		DDA3937_RS16560	0.28	-0.4
3,771,506	-		DDA3937_RS16560	0.28	-0.1
3,771,506	-		DDA3937_RS16560	0.28	+0.8
3,771,526	-		DDA3937_RS16560	0.32	-1.8
3,771,575	+		DDA3937_RS16560	0.43	-0.7
3,771,575	+		DDA3937_RS16560	0.43	-1.2
3,771,576	-		DDA3937_RS16560	0.43	+0.3
3,771,576	-		DDA3937_RS16560	0.43	-0.9
3,771,585	+		DDA3937_RS16560	0.45	-0.7
3,771,586	-		DDA3937_RS16560	0.46	+0.5
3,771,648	+		DDA3937_RS16560	0.59	-0.7
3,771,648	+		DDA3937_RS16560	0.59	+0.1
3,771,649	-		DDA3937_RS16560	0.59	+1.7
3,771,649	-		DDA3937_RS16560	0.59	+1.7
3,771,805	+				-1.9
3,771,805	+				+0.4
3,771,805	+				-0.1
3,771,805	+				-0.4
3,771,805	+				+0.1
3,771,806	-				-0.1
3,771,806	-				+0.8
3,771,823	-				-0.3
3,771,835	+				+0.3
3,771,835	+				-0.5
3,771,836	-				-0.5
3,771,868	+				-0.9
3,771,891	+				+0.3
3,771,891	+				+0.3
3,771,891	+				+1.9
3,771,891	+				+0.3
3,771,891	+				-1.3
3,771,892	-				-0.4
3,771,908	-				-0.5
3,771,908	-				+0.2
3,771,909	+				+0.9
3,771,909	+				+0.6
3,771,909	+				-0.4
3,771,909	+				+0.7
3,771,909	+				-1.5
3,771,909	+				-0.9
3,771,909	+				-1.5
3,771,910	-				+1.3
3,771,910	-				+0.5
3,771,910	-				+0.8
3,771,910	-				-3.1
3,771,913	+				+2.7
3,771,914	-				+2.3
3,771,914	-				+0.8
3,771,914	-				+0.3
3,771,914	-				-0.5
3,771,935	+				-0.2
3,771,936	-				-1.1
3,771,939	+				+0.1
3,771,939	+				+0.1
3,771,939	+				+0.1
3,771,939	+				-0.4
3,771,940	-				-0.7
3,771,940	-				+1.6
3,771,941	+				-0.3
3,771,942	-				+1.7
3,771,942	-				-1.4
3,771,942	-				-0.2
3,771,946	+				+0.4
3,771,946	+				-0.9
3,771,946	+				-0.8
3,771,946	+				+0.3
3,771,946	+				-0.1
3,771,946	+				+0.2
3,771,946	+				+0.8
3,771,946	+				-0.7
3,771,946	+				-0.0
3,771,946	+				-1.7
3,771,946	+				-1.1
3,771,946	+				-1.2
3,771,946	+				-0.7
3,771,947	-				+0.1
3,771,947	-				-0.7
3,771,947	-				-0.4
3,771,947	-				+1.3
3,771,947	-				+0.5
3,771,947	-				-2.1
3,771,947	-				-0.3
3,771,947	-				-2.4
3,771,947	-				-1.7
3,771,947	-				-2.0
3,771,957	+				-0.1
3,771,957	+				-1.4
3,771,958	-				+0.3
3,771,958	-				-0.6
3,771,962	+				-1.4
3,771,963	-				+1.0
3,771,963	-				-0.4
3,771,979	-				+0.6
3,771,979	-				-0.4
3,772,000	+				+1.2
3,772,000	+				-1.1
3,772,000	+				-1.7
3,772,005	-				-1.1
3,772,022	+				-1.5
3,772,022	+				-1.9
3,772,023	-				-0.5
3,772,023	-				-0.2
3,772,037	-				+1.3
3,772,039	+				-0.3
3,772,039	+				+1.9
3,772,052	-				-3.6
3,772,052	-				-0.1
3,772,052	-				+0.7
3,772,057	+				+1.8
3,772,057	+				-0.1
3,772,063	-				-1.3
3,772,100	+				-0.4
3,772,100	+				-0.9
3,772,100	+				+0.6
3,772,100	+				-0.9
3,772,100	+				+0.2
3,772,100	+				-2.1
3,772,100	+				+0.2
3,772,100	+				-0.7
3,772,100	+				+0.2
3,772,100	+				-1.1
3,772,101	-				+0.5
3,772,101	-				-0.9
3,772,101	-				+0.5
3,772,101	-				-0.1
3,772,101	-				+0.2
3,772,101	-				+1.9
3,772,101	-				-1.9
3,772,101	-				+0.3
3,772,101	-				+0.2
3,772,101	-				+0.0
3,772,101	-				-0.5
3,772,101	-				+0.2
3,772,101	-				+0.5
3,772,101	-				-2.2
3,772,101	-				-2.4
3,772,101	-				-1.4
3,772,101	-				+2.6
3,772,101	-				-2.4
3,772,101	-				-0.7
3,772,101	-				-2.4
3,772,101	-				-0.7
3,772,106	+				-1.4
3,772,106	+				+0.3
3,772,106	+				-0.4
3,772,174	+		DDA3937_RS16565	0.36	+2.1
3,772,174	+		DDA3937_RS16565	0.36	-0.6
3,772,175	-		DDA3937_RS16565	0.37	-0.3
3,772,175	-		DDA3937_RS16565	0.37	+0.1