Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14825

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,400,957	+		DDA3937_RS14815	0.58	-0.4
3,400,957	+		DDA3937_RS14815	0.58	-0.1
3,400,957	+		DDA3937_RS14815	0.58	-0.4
3,400,957	+		DDA3937_RS14815	0.58	+3.1
3,400,958	-		DDA3937_RS14815	0.58	+1.0
3,400,981	+		DDA3937_RS14815	0.62	-0.1
3,400,981	+		DDA3937_RS14815	0.62	-0.3
3,400,982	-		DDA3937_RS14815	0.62	+0.7
3,400,982	-		DDA3937_RS14815	0.62	-0.8
3,400,982	-		DDA3937_RS14815	0.62	+0.5
3,400,982	-		DDA3937_RS14815	0.62	-1.0
3,400,982	-		DDA3937_RS14815	0.62	+0.2
3,400,982	-		DDA3937_RS14815	0.62	-2.2
3,400,983	+		DDA3937_RS14815	0.62	-0.3
3,400,983	+		DDA3937_RS14815	0.62	+0.9
3,400,983	+		DDA3937_RS14815	0.62	+0.9
3,400,983	+		DDA3937_RS14815	0.62	-0.3
3,400,984	-		DDA3937_RS14815	0.62	-0.5
3,400,984	-		DDA3937_RS14815	0.62	+1.2
3,400,984	-		DDA3937_RS14815	0.62	+0.5
3,400,984	-		DDA3937_RS14815	0.62	+0.4
3,400,984	-		DDA3937_RS14815	0.62	-0.3
3,400,984	-		DDA3937_RS14815	0.62	+0.3
3,401,085	+		DDA3937_RS14815	0.77	+0.5
3,401,085	+		DDA3937_RS14815	0.77	-0.5
3,401,317	+				+0.7
3,401,317	+		DDA3937_RS14820	0.12	-0.0
3,401,370	+		DDA3937_RS14820	0.25	+1.6
3,401,435	+		DDA3937_RS14820	0.41	-1.3
3,401,435	+		DDA3937_RS14820	0.41	-1.8
3,401,435	+		DDA3937_RS14820	0.41	+0.0
3,401,436	-		DDA3937_RS14820	0.41	-0.8
3,401,436	-		DDA3937_RS14820	0.41	-0.3
3,401,436	-		DDA3937_RS14820	0.41	-1.7
3,401,436	-		DDA3937_RS14820	0.41	-1.8
3,401,436	-		DDA3937_RS14820	0.41	+1.1
3,401,456	+		DDA3937_RS14820	0.46	-0.1
3,401,457	-		DDA3937_RS14820	0.47	-3.1
3,401,506	-		DDA3937_RS14820	0.59	+0.2
3,401,509	+		DDA3937_RS14820	0.59	-1.5
3,401,509	+		DDA3937_RS14820	0.59	-0.2
3,401,509	+		DDA3937_RS14820	0.59	-0.7
3,401,510	-		DDA3937_RS14820	0.60	+0.6
3,401,510	-		DDA3937_RS14820	0.60	-0.1
3,401,510	-		DDA3937_RS14820	0.60	-0.7
3,401,663	+				-0.6
3,401,663	+				-1.1
3,401,663	+				-1.2
3,401,663	+				-0.3
3,401,663	+				-0.3
3,401,663	+				-0.8
3,401,664	-				+1.6
3,401,664	-				+0.3
3,401,664	-				-0.1
3,401,664	-				+0.1
3,401,664	-				-0.4
3,401,664	-				-0.7
3,401,686	+				+1.5
3,401,689	+				+0.6
3,401,690	-				-1.1
3,401,696	+				+0.3
3,401,696	+				-0.4
3,401,735	+				+1.5
3,401,831	+				+0.7
3,401,831	+				-2.1
3,401,832	-				+0.2
3,401,832	-				+0.3
3,401,955	-		DDA3937_RS14825	0.10	+1.1
3,401,955	-		DDA3937_RS14825	0.10	+1.9
3,402,041	+		DDA3937_RS14825	0.17	+0.6
3,402,068	+		DDA3937_RS14825	0.19	-1.2
3,402,068	+		DDA3937_RS14825	0.19	-1.6
3,402,068	+		DDA3937_RS14825	0.19	-0.6
3,402,068	+		DDA3937_RS14825	0.19	+0.4
3,402,068	+		DDA3937_RS14825	0.19	-0.5
3,402,068	+		DDA3937_RS14825	0.19	-2.8
3,402,068	+		DDA3937_RS14825	0.19	-1.6
3,402,068	+		DDA3937_RS14825	0.19	-0.5
3,402,068	+		DDA3937_RS14825	0.19	+0.4
3,402,068	+		DDA3937_RS14825	0.19	+0.8
3,402,069	-		DDA3937_RS14825	0.20	-0.6
3,402,069	-		DDA3937_RS14825	0.20	-2.2
3,402,069	-		DDA3937_RS14825	0.20	+1.1
3,402,069	-		DDA3937_RS14825	0.20	+0.3
3,402,069	-		DDA3937_RS14825	0.20	-1.7
3,402,069	-		DDA3937_RS14825	0.20	+0.4
3,402,069	-		DDA3937_RS14825	0.20	-0.1
3,402,069	-		DDA3937_RS14825	0.20	-1.3
3,402,069	-		DDA3937_RS14825	0.20	-1.4
3,402,069	-		DDA3937_RS14825	0.20	-0.6
3,402,069	-		DDA3937_RS14825	0.20	+2.0
3,402,069	-		DDA3937_RS14825	0.20	+0.3
3,402,239	+		DDA3937_RS14825	0.33	+0.3
3,402,240	-		DDA3937_RS14825	0.33	-1.5
3,402,250	-		DDA3937_RS14825	0.34	+2.2
3,402,317	+		DDA3937_RS14825	0.40	+1.5
3,402,317	+		DDA3937_RS14825	0.40	-2.6
3,402,318	-		DDA3937_RS14825	0.40	+3.0
3,402,357	+		DDA3937_RS14825	0.43	-2.1
3,402,537	+		DDA3937_RS14825	0.58	+0.0
3,402,537	+		DDA3937_RS14825	0.58	+0.6
3,402,538	-		DDA3937_RS14825	0.58	-0.7
3,402,538	-		DDA3937_RS14825	0.58	-0.8
3,402,550	-		DDA3937_RS14825	0.59	-2.6
3,402,635	-		DDA3937_RS14825	0.66	+0.9
3,402,635	-				-0.8
3,402,635	-		DDA3937_RS14825	0.66	-1.8
3,402,644	+		DDA3937_RS14825	0.67	+0.5
3,402,644	+		DDA3937_RS14825	0.67	+0.9
3,402,645	-		DDA3937_RS14825	0.67	-1.8
3,402,645	-		DDA3937_RS14825	0.67	-3.1
3,402,645	-		DDA3937_RS14825	0.67	+0.4
3,402,733	-		DDA3937_RS14825	0.74	+3.1
3,402,733	-		DDA3937_RS14825	0.74	-2.1
3,402,794	+		DDA3937_RS14825	0.79	-0.9
3,402,794	+		DDA3937_RS14825	0.79	-2.4
3,402,794	+		DDA3937_RS14825	0.79	-0.3
3,402,794	+		DDA3937_RS14825	0.79	+1.2
3,402,795	-				+0.3
3,402,795	-		DDA3937_RS14825	0.79	+0.4
3,402,846	-		DDA3937_RS14825	0.83	+0.4
3,402,877	-		DDA3937_RS14825	0.86	+1.7
3,402,877	-		DDA3937_RS14825	0.86	+0.9
3,402,895	-		DDA3937_RS14825	0.87	+0.2
3,402,895	-		DDA3937_RS14825	0.87	-0.5
3,402,895	-		DDA3937_RS14825	0.87	-2.7
3,402,895	-		DDA3937_RS14825	0.87	-0.4
3,402,895	-		DDA3937_RS14825	0.87	-0.8
3,402,927	+		DDA3937_RS14825	0.90	-0.2
3,402,939	+				-0.7
3,402,991	-				-2.1
3,403,053	+				-1.1
3,403,053	+				-0.6
3,403,053	+				-1.8
3,403,054	-				+1.2
3,403,054	-				+0.0
3,403,054	-				-1.6
3,403,056	+				-1.8
3,403,056	+				-0.7
3,403,056	+				-1.1
3,403,056	+				+0.7
3,403,056	+				+0.2
3,403,056	+				-2.5
3,403,056	+				+1.3
3,403,067	+				+0.4
3,403,068	-				+0.7
3,403,130	-				+0.4
3,403,130	-				-0.7
3,403,145	+				-2.1
3,403,145	+				-1.2
3,403,146	-				+0.0
3,403,170	-				+0.1
3,403,295	+				+1.3
3,403,420	-				-0.3
3,403,442	-				+1.8
3,403,442	-				+2.1
3,403,485	+				-0.9
3,403,485	+				-0.9
3,403,485	+				-1.6
3,403,486	-				-0.1
3,403,486	-				-2.4
3,403,486	-				-1.4
3,403,486	-				-1.0
3,403,500	+				+0.5
3,403,566	+		DDA3937_RS14830	0.11	-1.6
3,403,567	-		DDA3937_RS14830	0.11	-2.3
3,403,737	+		DDA3937_RS14830	0.31	+0.9
3,403,737	+		DDA3937_RS14830	0.31	-1.6
3,403,737	+		DDA3937_RS14830	0.31	+1.2
3,403,738	-		DDA3937_RS14830	0.31	-0.6
3,403,779	+		DDA3937_RS14830	0.36	-0.9
3,403,889	+		DDA3937_RS14830	0.49	+0.7
3,403,890	-		DDA3937_RS14830	0.49	-1.5
3,403,890	-		DDA3937_RS14830	0.49	-1.8
3,403,890	-		DDA3937_RS14830	0.49	+0.7
3,403,890	-		DDA3937_RS14830	0.49	+0.4
3,403,953	+		DDA3937_RS14830	0.56	+0.5
3,403,985	-		DDA3937_RS14830	0.60	-0.0
3,404,031	+		DDA3937_RS14830	0.65	+0.3
3,404,031	+		DDA3937_RS14830	0.65	-0.3
3,404,031	+		DDA3937_RS14830	0.65	-0.8
3,404,031	+		DDA3937_RS14830	0.65	+0.2
3,404,032	-		DDA3937_RS14830	0.65	-2.0