Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08590

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08575 and DDA3937_RS08580 overlap by 4 nucleotidesDDA3937_RS08580 and DDA3937_RS08585 are separated by 2 nucleotidesDDA3937_RS08585 and DDA3937_RS08590 are separated by 246 nucleotidesDDA3937_RS08590 and DDA3937_RS08595 are separated by 34 nucleotides DDA3937_RS08575: DDA3937_RS08575 - cyclic pyranopterin monophosphate synthase MoaC, at 1,937,101 to 1,937,583 _RS08575 DDA3937_RS08580: DDA3937_RS08580 - molybdopterin synthase sulfur carrier subunit, at 1,937,580 to 1,937,825 _RS08580 DDA3937_RS08585: DDA3937_RS08585 - molybdopterin synthase catalytic subunit MoaE, at 1,937,828 to 1,938,277 _RS08585 DDA3937_RS08590: DDA3937_RS08590 - iron ABC transporter substrate-binding protein, at 1,938,524 to 1,939,540 _RS08590 DDA3937_RS08595: DDA3937_RS08595 - iron ABC transporter permease, at 1,939,575 to 1,941,167 _RS08595 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1937.532 kb on - strand, within DDA3937_RS08575at 1937.585 kb on + strandat 1937.652 kb on + strand, within DDA3937_RS08580at 1937.827 kb on + strandat 1937.828 kb on - strandat 1937.879 kb on + strand, within DDA3937_RS08585at 1937.942 kb on - strand, within DDA3937_RS08585at 1937.995 kb on + strand, within DDA3937_RS08585at 1938.090 kb on - strand, within DDA3937_RS08585at 1938.174 kb on - strand, within DDA3937_RS08585at 1938.174 kb on - strand, within DDA3937_RS08585at 1938.311 kb on - strandat 1938.311 kb on - strandat 1938.311 kb on - strandat 1938.311 kb on - strandat 1938.311 kb on - strandat 1938.353 kb on + strandat 1938.387 kb on + strandat 1938.387 kb on + strandat 1938.387 kb on + strandat 1938.388 kb on - strandat 1938.432 kb on + strandat 1938.488 kb on + strandat 1938.488 kb on + strandat 1938.488 kb on + strandat 1938.488 kb on + strandat 1938.488 kb on + strandat 1938.489 kb on - strandat 1938.489 kb on - strandat 1938.494 kb on + strandat 1938.495 kb on - strandat 1938.504 kb on - strandat 1938.629 kb on + strand, within DDA3937_RS08590at 1938.677 kb on - strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.930 kb on - strand, within DDA3937_RS08590at 1939.124 kb on + strand, within DDA3937_RS08590at 1939.125 kb on - strand, within DDA3937_RS08590at 1939.125 kb on - strand, within DDA3937_RS08590at 1939.126 kb on + strand, within DDA3937_RS08590at 1939.183 kb on + strand, within DDA3937_RS08590at 1939.184 kb on - strand, within DDA3937_RS08590at 1939.184 kb on - strand, within DDA3937_RS08590at 1939.187 kb on + strandat 1939.188 kb on - strand, within DDA3937_RS08590at 1939.188 kb on - strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.194 kb on - strand, within DDA3937_RS08590at 1939.194 kb on - strand, within DDA3937_RS08590at 1939.196 kb on + strand, within DDA3937_RS08590at 1939.196 kb on + strand, within DDA3937_RS08590at 1939.217 kb on - strand, within DDA3937_RS08590at 1939.250 kb on + strand, within DDA3937_RS08590at 1939.250 kb on + strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.254 kb on - strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.538 kb on + strandat 1939.539 kb on - strandat 1939.562 kb on + strandat 1939.562 kb on + strandat 1939.563 kb on - strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.568 kb on - strandat 1939.752 kb on - strand, within DDA3937_RS08595at 1939.799 kb on + strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.802 kb on + strand, within DDA3937_RS08595at 1939.802 kb on + strand, within DDA3937_RS08595at 1939.807 kb on + strand, within DDA3937_RS08595at 1939.808 kb on - strand, within DDA3937_RS08595at 1940.023 kb on - strand, within DDA3937_RS08595at 1940.023 kb on - strand, within DDA3937_RS08595at 1940.033 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.038 kb on - strand, within DDA3937_RS08595at 1940.038 kb on - strand, within DDA3937_RS08595at 1940.214 kb on + strand, within DDA3937_RS08595at 1940.234 kb on + strand, within DDA3937_RS08595at 1940.270 kb on + strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,937,532 - DDA3937_RS08575 0.89 -1.5
1,937,585 + -0.8
1,937,652 + DDA3937_RS08580 0.29 +0.5
1,937,827 + -1.5
1,937,828 - -0.7
1,937,879 + DDA3937_RS08585 0.11 -1.8
1,937,942 - DDA3937_RS08585 0.25 -1.1
1,937,995 + DDA3937_RS08585 0.37 -1.5
1,938,090 - DDA3937_RS08585 0.58 -3.3
1,938,174 - DDA3937_RS08585 0.77 -2.9
1,938,174 - DDA3937_RS08585 0.77 +0.1
1,938,311 - -0.5
1,938,311 - +2.6
1,938,311 - -1.1
1,938,311 - -1.2
1,938,311 - -1.5
1,938,353 + -0.7
1,938,387 + -0.7
1,938,387 + +0.2
1,938,387 + -1.5
1,938,388 - -0.2
1,938,432 + +0.2
1,938,488 + -2.1
1,938,488 + -0.3
1,938,488 + -0.9
1,938,488 + -1.3
1,938,488 + +0.2
1,938,489 - -0.6
1,938,489 - -1.5
1,938,494 + -1.3
1,938,495 - +0.5
1,938,504 - -1.2
1,938,629 + DDA3937_RS08590 0.10 -2.6
1,938,677 - DDA3937_RS08590 0.15 -2.1
1,938,774 + DDA3937_RS08590 0.25 -0.4
1,938,774 + DDA3937_RS08590 0.25 -0.5
1,938,774 + DDA3937_RS08590 0.25 -0.5
1,938,775 - DDA3937_RS08590 0.25 -0.2
1,938,775 - DDA3937_RS08590 0.25 -1.6
1,938,775 - DDA3937_RS08590 0.25 -1.1
1,938,775 - DDA3937_RS08590 0.25 -0.9
1,938,930 - DDA3937_RS08590 0.40 +0.5
1,939,124 + DDA3937_RS08590 0.59 -0.5
1,939,125 - DDA3937_RS08590 0.59 +0.2
1,939,125 - DDA3937_RS08590 0.59 -1.8
1,939,126 + DDA3937_RS08590 0.59 -1.1
1,939,183 + DDA3937_RS08590 0.65 -1.9
1,939,184 - DDA3937_RS08590 0.65 -2.1
1,939,184 - DDA3937_RS08590 0.65 -1.7
1,939,187 + -0.1
1,939,188 - DDA3937_RS08590 0.65 -0.5
1,939,188 - DDA3937_RS08590 0.65 -1.6
1,939,193 + DDA3937_RS08590 0.66 -0.5
1,939,193 + DDA3937_RS08590 0.66 -1.8
1,939,193 + DDA3937_RS08590 0.66 -2.2
1,939,193 + DDA3937_RS08590 0.66 +0.9
1,939,194 - DDA3937_RS08590 0.66 -1.6
1,939,194 - DDA3937_RS08590 0.66 -1.8
1,939,196 + DDA3937_RS08590 0.66 -1.8
1,939,196 + DDA3937_RS08590 0.66 +0.2
1,939,217 - DDA3937_RS08590 0.68 -0.6
1,939,250 + DDA3937_RS08590 0.71 -1.1
1,939,250 + DDA3937_RS08590 0.71 -0.4
1,939,251 - DDA3937_RS08590 0.71 -0.3
1,939,251 - DDA3937_RS08590 0.71 -1.1
1,939,251 - DDA3937_RS08590 0.71 -2.0
1,939,251 - DDA3937_RS08590 0.71 -0.6
1,939,253 + DDA3937_RS08590 0.72 -0.5
1,939,253 + DDA3937_RS08590 0.72 -0.1
1,939,253 + DDA3937_RS08590 0.72 -0.6
1,939,254 - DDA3937_RS08590 0.72 -2.1
1,939,324 + DDA3937_RS08590 0.79 -1.5
1,939,324 + DDA3937_RS08590 0.79 -1.7
1,939,324 + DDA3937_RS08590 0.79 -0.5
1,939,325 - DDA3937_RS08590 0.79 -1.8
1,939,325 - DDA3937_RS08590 0.79 -0.9
1,939,325 - DDA3937_RS08590 0.79 -0.1
1,939,538 + -0.8
1,939,539 - -2.6
1,939,562 + -1.5
1,939,562 + -1.0
1,939,563 - -1.2
1,939,567 + -0.8
1,939,567 + -1.1
1,939,567 + -2.8
1,939,567 + -1.5
1,939,568 - -1.5
1,939,752 - DDA3937_RS08595 0.11 -1.8
1,939,799 + DDA3937_RS08595 0.14 -1.3
1,939,800 - DDA3937_RS08595 0.14 -1.3
1,939,800 - DDA3937_RS08595 0.14 +1.8
1,939,800 - DDA3937_RS08595 0.14 -0.3
1,939,802 + DDA3937_RS08595 0.14 -1.5
1,939,802 + DDA3937_RS08595 0.14 -2.6
1,939,807 + DDA3937_RS08595 0.15 -0.8
1,939,808 - DDA3937_RS08595 0.15 -0.6
1,940,023 - DDA3937_RS08595 0.28 -1.8
1,940,023 - DDA3937_RS08595 0.28 -1.1
1,940,033 + DDA3937_RS08595 0.29 -1.9
1,940,037 + DDA3937_RS08595 0.29 -0.2
1,940,037 + DDA3937_RS08595 0.29 -0.5
1,940,037 + DDA3937_RS08595 0.29 -0.3
1,940,038 - DDA3937_RS08595 0.29 -2.1
1,940,038 - DDA3937_RS08595 0.29 -2.1
1,940,214 + DDA3937_RS08595 0.40 -2.8
1,940,234 + DDA3937_RS08595 0.41 -1.2
1,940,270 + DDA3937_RS08595 0.44 -1.3
1,940,271 - DDA3937_RS08595 0.44 -2.3
1,940,271 - DDA3937_RS08595 0.44 -1.6
1,940,271 - DDA3937_RS08595 0.44 -1.9
1,940,271 - DDA3937_RS08595 0.44 -1.3

Or see this region's nucleotide sequence