Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07890

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,786,118	+		DDA3937_RS07885	0.39	-1.8
1,786,119	-		DDA3937_RS07885	0.39	-2.9
1,786,119	-		DDA3937_RS07885	0.39	-1.1
1,786,119	-		DDA3937_RS07885	0.39	-0.5
1,786,119	-		DDA3937_RS07885	0.39	-2.0
1,786,128	+		DDA3937_RS07885	0.40	+0.1
1,786,128	+		DDA3937_RS07885	0.40	-1.3
1,786,129	-		DDA3937_RS07885	0.40	-0.2
1,786,129	-		DDA3937_RS07885	0.40	-0.4
1,786,129	-		DDA3937_RS07885	0.40	-2.0
1,786,143	+		DDA3937_RS07885	0.42	+0.3
1,786,144	-		DDA3937_RS07885	0.42	-1.0
1,786,225	+		DDA3937_RS07885	0.52	-1.0
1,786,226	-		DDA3937_RS07885	0.52	-0.1
1,786,242	+		DDA3937_RS07885	0.54	-0.2
1,786,276	+		DDA3937_RS07885	0.59	-2.0
1,786,276	+		DDA3937_RS07885	0.59	-3.2
1,786,277	-		DDA3937_RS07885	0.59	-0.9
1,786,320	+		DDA3937_RS07885	0.64	-0.4
1,786,320	+		DDA3937_RS07885	0.64	-0.4
1,786,321	-		DDA3937_RS07885	0.64	-0.6
1,786,353	+		DDA3937_RS07885	0.68	-0.1
1,786,354	-		DDA3937_RS07885	0.68	-0.4
1,786,357	-		DDA3937_RS07885	0.69	-1.1
1,786,360	+		DDA3937_RS07885	0.69	-0.4
1,786,360	+		DDA3937_RS07885	0.69	+0.4
1,786,360	+		DDA3937_RS07885	0.69	+0.2
1,786,360	+		DDA3937_RS07885	0.69	-1.2
1,786,360	+		DDA3937_RS07885	0.69	-1.4
1,786,360	+		DDA3937_RS07885	0.69	-1.2
1,786,360	-		DDA3937_RS07885	0.69	+0.6
1,786,361	-		DDA3937_RS07885	0.69	+1.4
1,786,361	-		DDA3937_RS07885	0.69	-0.6
1,786,361	-		DDA3937_RS07885	0.69	-1.1
1,786,365	-		DDA3937_RS07885	0.70	+0.7
1,786,365	-		DDA3937_RS07885	0.70	-0.4
1,786,470	+		DDA3937_RS07885	0.83	+0.8
1,786,470	+		DDA3937_RS07885	0.83	-2.6
1,786,471	-		DDA3937_RS07885	0.83	-0.8
1,786,521	-		DDA3937_RS07885	0.89	-1.0
1,786,521	-		DDA3937_RS07885	0.89	-1.4
1,786,539	+				+0.7
1,786,540	-				+1.6
1,786,576	-				-0.6
1,786,592	-				-0.9
1,786,609	+				+2.2
1,786,609	+				-0.9
1,786,609	+				-0.2
1,786,609	+				+0.8
1,786,609	+				+1.3
1,786,609	+				+1.7
1,786,609	+				-0.6
1,786,609	+				+1.2
1,786,609	+				-0.2
1,786,609	+				-0.7
1,786,610	-				-0.8
1,786,610	-				-2.6
1,786,610	-				+0.7
1,786,610	-				-1.7
1,786,610	-				-1.1
1,786,610	-				+1.8
1,786,610	-				+0.3
1,786,610	-				-0.2
1,786,610	-				+0.6
1,786,610	-				-2.7
1,786,610	-				-0.4
1,786,610	-				+0.0
1,786,613	+				+1.6
1,786,613	+				-0.6
1,786,613	+				-1.7
1,786,614	-				+0.7
1,786,614	-				-1.4
1,786,614	-				-0.4
1,786,630	+				-0.8
1,786,630	+				-1.6
1,786,714	-				-0.1
1,786,731	+		DDA3937_RS23415	0.19	+0.0
1,786,830	+				+0.4
1,787,102	+				-0.5
1,787,103	-				+0.9
1,787,103	-				+0.6
1,787,134	+				+1.2
1,787,134	+				+0.9
1,787,134	+				+0.4
1,787,134	+				-0.8
1,787,135	-				-0.7
1,787,135	-				+0.9
1,787,135	-				-0.6
1,787,215	+				-0.6
1,787,215	+				-0.4
1,787,216	-				-0.1
1,787,216	-				-0.7
1,787,343	+		DDA3937_RS07890	0.17	-0.4
1,787,343	+		DDA3937_RS07890	0.17	+0.5
1,787,344	-		DDA3937_RS07890	0.17	-1.8
1,787,344	-		DDA3937_RS07890	0.17	+0.0
1,787,347	+		DDA3937_RS07890	0.17	+0.2
1,787,347	+		DDA3937_RS07890	0.17	+0.0
1,787,347	+		DDA3937_RS07890	0.17	-0.6
1,787,347	+				+0.6
1,787,348	-		DDA3937_RS07890	0.17	-0.6
1,787,348	-		DDA3937_RS07890	0.17	-0.8
1,787,348	-		DDA3937_RS07890	0.17	-1.7
1,787,348	-		DDA3937_RS07890	0.17	+0.6
1,787,422	+		DDA3937_RS07890	0.23	-1.2
1,787,423	-		DDA3937_RS07890	0.23	-0.4
1,787,423	-				-0.4
1,787,460	+		DDA3937_RS07890	0.26	-0.2
1,787,485	+		DDA3937_RS07890	0.28	-0.4
1,787,544	+		DDA3937_RS07890	0.32	+1.0
1,787,544	+		DDA3937_RS07890	0.32	-0.6
1,787,914	+		DDA3937_RS07890	0.60	-1.5
1,787,914	+		DDA3937_RS07890	0.60	+0.2
1,787,914	+		DDA3937_RS07890	0.60	-1.2
1,787,914	+		DDA3937_RS07890	0.60	+0.5
1,787,915	-		DDA3937_RS07890	0.60	-1.1
1,787,915	-				-0.2
1,787,916	+		DDA3937_RS07890	0.60	-2.6
1,787,916	+		DDA3937_RS07890	0.60	-0.4
1,787,916	+		DDA3937_RS07890	0.60	-1.0
1,787,916	+		DDA3937_RS07890	0.60	-1.0
1,787,916	+		DDA3937_RS07890	0.60	+0.6
1,787,917	-		DDA3937_RS07890	0.60	+0.5
1,787,917	-		DDA3937_RS07890	0.60	+1.1
1,787,917	-		DDA3937_RS07890	0.60	-0.4
1,787,972	-		DDA3937_RS07890	0.64	-1.1
1,788,009	+		DDA3937_RS07890	0.67	+1.8
1,788,194	+		DDA3937_RS07890	0.81	+0.0
1,788,195	-		DDA3937_RS07890	0.81	-0.4
1,788,195	-		DDA3937_RS07890	0.81	+0.9
1,788,195	-		DDA3937_RS07890	0.81	+0.6
1,788,195	-		DDA3937_RS07890	0.81	-1.0
1,788,397	+				+0.6
1,788,668	+		DDA3937_RS07895	0.25	-3.0
1,788,669	-		DDA3937_RS07895	0.25	-0.4
1,788,669	-		DDA3937_RS07895	0.25	-0.8
1,788,782	-		DDA3937_RS07895	0.38	-1.0
1,788,782	-		DDA3937_RS07895	0.38	-0.3
1,788,782	-		DDA3937_RS07895	0.38	-0.7
1,788,782	-		DDA3937_RS07895	0.38	+0.3
1,788,782	-		DDA3937_RS07895	0.38	+1.5
1,788,799	-		DDA3937_RS07895	0.40	-0.9
1,788,823	+		DDA3937_RS07895	0.43	+0.8
1,789,057	+		DDA3937_RS07895	0.71	+1.0
1,789,303	+				-2.7
1,789,303	+				-0.7
1,789,310	+				+1.0
1,789,310	+				-0.4
1,789,311	-				-0.7
1,789,311	-				-0.3
1,789,311	-				+0.3
1,789,317	+				-0.9
1,789,317	+				-0.4
1,789,317	+				+0.6
1,789,318	-				+0.3
1,789,318	-				-1.7
1,789,318	-				+1.0
1,789,319	+				-2.6
1,789,319	+				-2.0
1,789,320	-				+1.0
1,789,320	-				+1.8
1,789,320	-				-0.7
1,789,320	-				+2.8
1,789,428	+		DDA3937_RS07900	0.13	+0.4