Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07410

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07405 and DDA3937_RS07410 are separated by 34 nucleotidesDDA3937_RS07410 and DDA3937_RS07415 are separated by 510 nucleotidesDDA3937_RS07415 and DDA3937_RS07420 are separated by 8 nucleotides DDA3937_RS07405: DDA3937_RS07405 - formate dehydrogenase subunit alpha, at 1,673,030 to 1,675,180 _RS07405 DDA3937_RS07410: DDA3937_RS07410 - 4Fe-4S dicluster domain-containing protein, at 1,675,215 to 1,675,757 _RS07410 DDA3937_RS07415: DDA3937_RS07415 - DUF4160 domain-containing protein, at 1,676,268 to 1,676,525 _RS07415 DDA3937_RS07420: DDA3937_RS07420 - DUF2442 domain-containing protein, at 1,676,534 to 1,677,022 _RS07420 Position (kb) 1675 1676Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1674.327 kb on + strand, within DDA3937_RS07405at 1674.328 kb on - strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strandat 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.331 kb on + strand, within DDA3937_RS07405at 1674.332 kb on - strand, within DDA3937_RS07405at 1674.332 kb on - strand, within DDA3937_RS07405at 1674.332 kb on - strand, within DDA3937_RS07405at 1674.384 kb on + strand, within DDA3937_RS07405at 1674.384 kb on + strand, within DDA3937_RS07405at 1674.385 kb on - strand, within DDA3937_RS07405at 1674.385 kb on - strand, within DDA3937_RS07405at 1674.396 kb on + strand, within DDA3937_RS07405at 1674.417 kb on + strand, within DDA3937_RS07405at 1674.417 kb on + strand, within DDA3937_RS07405at 1674.418 kb on - strand, within DDA3937_RS07405at 1674.436 kb on + strand, within DDA3937_RS07405at 1674.460 kb on + strand, within DDA3937_RS07405at 1674.462 kb on + strand, within DDA3937_RS07405at 1674.462 kb on + strand, within DDA3937_RS07405at 1674.463 kb on - strand, within DDA3937_RS07405at 1674.463 kb on - strand, within DDA3937_RS07405at 1674.463 kb on - strand, within DDA3937_RS07405at 1674.463 kb on - strand, within DDA3937_RS07405at 1674.657 kb on + strand, within DDA3937_RS07405at 1674.658 kb on - strand, within DDA3937_RS07405at 1674.658 kb on - strand, within DDA3937_RS07405at 1674.707 kb on - strand, within DDA3937_RS07405at 1674.707 kb on - strand, within DDA3937_RS07405at 1674.707 kb on - strand, within DDA3937_RS07405at 1674.731 kb on + strand, within DDA3937_RS07405at 1674.784 kb on + strand, within DDA3937_RS07405at 1674.785 kb on - strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.828 kb on + strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1674.829 kb on - strand, within DDA3937_RS07405at 1675.042 kb on - strandat 1675.042 kb on - strandat 1675.129 kb on + strandat 1675.129 kb on + strandat 1675.152 kb on + strandat 1675.152 kb on + strandat 1675.152 kb on + strandat 1675.153 kb on - strandat 1675.165 kb on + strandat 1675.165 kb on + strandat 1675.165 kb on + strandat 1675.166 kb on - strandat 1675.166 kb on - strandat 1675.169 kb on + strandat 1675.169 kb on + strandat 1675.262 kb on + strandat 1675.263 kb on - strandat 1675.263 kb on - strandat 1675.412 kb on - strand, within DDA3937_RS07410at 1675.518 kb on - strand, within DDA3937_RS07410at 1675.533 kb on + strandat 1675.534 kb on - strand, within DDA3937_RS07410at 1675.690 kb on - strand, within DDA3937_RS07410at 1675.690 kb on - strand, within DDA3937_RS07410at 1675.721 kb on + strandat 1675.721 kb on + strandat 1675.722 kb on - strandat 1675.797 kb on - strandat 1675.797 kb on - strandat 1676.013 kb on + strandat 1676.013 kb on + strandat 1676.069 kb on - strandat 1676.084 kb on + strandat 1676.085 kb on - strandat 1676.085 kb on - strandat 1676.085 kb on - strandat 1676.160 kb on - strandat 1676.242 kb on - strandat 1676.304 kb on + strand, within DDA3937_RS07415at 1676.305 kb on - strand, within DDA3937_RS07415at 1676.386 kb on + strand, within DDA3937_RS07415at 1676.390 kb on + strand, within DDA3937_RS07415at 1676.390 kb on + strand, within DDA3937_RS07415at 1676.390 kb on + strandat 1676.391 kb on - strand, within DDA3937_RS07415at 1676.391 kb on - strand, within DDA3937_RS07415at 1676.391 kb on - strand, within DDA3937_RS07415at 1676.412 kb on + strand, within DDA3937_RS07415at 1676.412 kb on + strand, within DDA3937_RS07415at 1676.412 kb on + strand, within DDA3937_RS07415at 1676.412 kb on + strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.413 kb on - strand, within DDA3937_RS07415at 1676.424 kb on - strand, within DDA3937_RS07415at 1676.432 kb on + strand, within DDA3937_RS07415at 1676.432 kb on + strand, within DDA3937_RS07415at 1676.432 kb on + strand, within DDA3937_RS07415at 1676.432 kb on + strand, within DDA3937_RS07415at 1676.433 kb on - strand, within DDA3937_RS07415at 1676.433 kb on - strand, within DDA3937_RS07415at 1676.433 kb on - strand, within DDA3937_RS07415at 1676.433 kb on - strand, within DDA3937_RS07415at 1676.433 kb on - strand, within DDA3937_RS07415at 1676.444 kb on + strand, within DDA3937_RS07415at 1676.450 kb on + strand, within DDA3937_RS07415at 1676.450 kb on + strand, within DDA3937_RS07415at 1676.451 kb on - strand, within DDA3937_RS07415at 1676.533 kb on + strandat 1676.753 kb on + strand, within DDA3937_RS07420at 1676.753 kb on + strand, within DDA3937_RS07420at 1676.753 kb on + strand, within DDA3937_RS07420at 1676.753 kb on + strand, within DDA3937_RS07420at 1676.753 kb on + strand, within DDA3937_RS07420at 1676.754 kb on - strand, within DDA3937_RS07420

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,674,327 + DDA3937_RS07405 0.60 +0.4
1,674,328 - DDA3937_RS07405 0.60 -0.5
1,674,331 + DDA3937_RS07405 0.60 -1.6
1,674,331 + DDA3937_RS07405 0.60 +0.2
1,674,331 + -0.4
1,674,331 + DDA3937_RS07405 0.60 +0.2
1,674,331 + DDA3937_RS07405 0.60 -1.0
1,674,331 + DDA3937_RS07405 0.60 -0.7
1,674,331 + DDA3937_RS07405 0.60 +1.5
1,674,331 + DDA3937_RS07405 0.60 -0.7
1,674,332 - DDA3937_RS07405 0.61 -1.6
1,674,332 - DDA3937_RS07405 0.61 +0.5
1,674,332 - DDA3937_RS07405 0.61 +0.4
1,674,384 + DDA3937_RS07405 0.63 -0.6
1,674,384 + DDA3937_RS07405 0.63 +0.4
1,674,385 - DDA3937_RS07405 0.63 +0.3
1,674,385 - DDA3937_RS07405 0.63 -0.4
1,674,396 + DDA3937_RS07405 0.64 -0.7
1,674,417 + DDA3937_RS07405 0.64 -1.7
1,674,417 + DDA3937_RS07405 0.64 +0.6
1,674,418 - DDA3937_RS07405 0.65 +0.3
1,674,436 + DDA3937_RS07405 0.65 -2.5
1,674,460 + DDA3937_RS07405 0.66 -0.2
1,674,462 + DDA3937_RS07405 0.67 -0.1
1,674,462 + DDA3937_RS07405 0.67 -0.7
1,674,463 - DDA3937_RS07405 0.67 -0.4
1,674,463 - DDA3937_RS07405 0.67 -0.5
1,674,463 - DDA3937_RS07405 0.67 -0.2
1,674,463 - DDA3937_RS07405 0.67 +1.3
1,674,657 + DDA3937_RS07405 0.76 -0.4
1,674,658 - DDA3937_RS07405 0.76 -1.0
1,674,658 - DDA3937_RS07405 0.76 -0.8
1,674,707 - DDA3937_RS07405 0.78 -2.0
1,674,707 - DDA3937_RS07405 0.78 -1.4
1,674,707 - DDA3937_RS07405 0.78 -1.0
1,674,731 + DDA3937_RS07405 0.79 -0.8
1,674,784 + DDA3937_RS07405 0.82 -1.7
1,674,785 - DDA3937_RS07405 0.82 -0.9
1,674,828 + DDA3937_RS07405 0.84 -0.4
1,674,828 + DDA3937_RS07405 0.84 +0.6
1,674,828 + DDA3937_RS07405 0.84 +0.1
1,674,828 + DDA3937_RS07405 0.84 -1.4
1,674,828 + DDA3937_RS07405 0.84 +1.3
1,674,828 + DDA3937_RS07405 0.84 -1.7
1,674,828 + DDA3937_RS07405 0.84 -1.1
1,674,828 + DDA3937_RS07405 0.84 +0.0
1,674,828 + DDA3937_RS07405 0.84 -0.1
1,674,828 + DDA3937_RS07405 0.84 -1.0
1,674,829 - DDA3937_RS07405 0.84 -0.1
1,674,829 - DDA3937_RS07405 0.84 +1.0
1,674,829 - DDA3937_RS07405 0.84 -0.2
1,674,829 - DDA3937_RS07405 0.84 -0.3
1,674,829 - DDA3937_RS07405 0.84 -2.0
1,674,829 - DDA3937_RS07405 0.84 +0.1
1,674,829 - DDA3937_RS07405 0.84 -0.5
1,674,829 - DDA3937_RS07405 0.84 -0.2
1,674,829 - DDA3937_RS07405 0.84 -2.0
1,674,829 - DDA3937_RS07405 0.84 +1.4
1,674,829 - DDA3937_RS07405 0.84 +0.5
1,674,829 - DDA3937_RS07405 0.84 +1.0
1,674,829 - DDA3937_RS07405 0.84 +1.5
1,675,042 - +0.0
1,675,042 - +0.8
1,675,129 + +0.2
1,675,129 + -0.4
1,675,152 + +1.5
1,675,152 + -0.6
1,675,152 + +0.0
1,675,153 - +0.4
1,675,165 + +0.1
1,675,165 + +0.3
1,675,165 + -0.1
1,675,166 - -1.7
1,675,166 - -1.8
1,675,169 + -2.0
1,675,169 + -2.4
1,675,262 + +0.5
1,675,263 - -1.0
1,675,263 - +0.2
1,675,412 - DDA3937_RS07410 0.36 +0.0
1,675,518 - DDA3937_RS07410 0.56 -1.2
1,675,533 + -1.2
1,675,534 - DDA3937_RS07410 0.59 -1.8
1,675,690 - DDA3937_RS07410 0.87 -1.4
1,675,690 - DDA3937_RS07410 0.87 -2.2
1,675,721 + -0.1
1,675,721 + -3.0
1,675,722 - +0.2
1,675,797 - +0.3
1,675,797 - -1.6
1,676,013 + +0.6
1,676,013 + -2.2
1,676,069 - +0.7
1,676,084 + -1.1
1,676,085 - -0.2
1,676,085 - -0.3
1,676,085 - -3.2
1,676,160 - -0.8
1,676,242 - +1.2
1,676,304 + DDA3937_RS07415 0.14 -1.5
1,676,305 - DDA3937_RS07415 0.14 -0.8
1,676,386 + DDA3937_RS07415 0.46 -0.2
1,676,390 + DDA3937_RS07415 0.47 -0.0
1,676,390 + DDA3937_RS07415 0.47 +0.3
1,676,390 + -0.4
1,676,391 - DDA3937_RS07415 0.48 -0.4
1,676,391 - DDA3937_RS07415 0.48 -0.9
1,676,391 - DDA3937_RS07415 0.48 +0.0
1,676,412 + DDA3937_RS07415 0.56 -1.2
1,676,412 + DDA3937_RS07415 0.56 -3.8
1,676,412 + DDA3937_RS07415 0.56 +1.3
1,676,412 + DDA3937_RS07415 0.56 +0.0
1,676,413 - DDA3937_RS07415 0.56 -2.2
1,676,413 - DDA3937_RS07415 0.56 -2.1
1,676,413 - DDA3937_RS07415 0.56 +0.6
1,676,413 - DDA3937_RS07415 0.56 -0.4
1,676,413 - DDA3937_RS07415 0.56 +0.8
1,676,413 - DDA3937_RS07415 0.56 +0.7
1,676,424 - DDA3937_RS07415 0.60 -0.1
1,676,432 + DDA3937_RS07415 0.64 -1.8
1,676,432 + DDA3937_RS07415 0.64 +0.5
1,676,432 + DDA3937_RS07415 0.64 +0.1
1,676,432 + DDA3937_RS07415 0.64 +0.9
1,676,433 - DDA3937_RS07415 0.64 -1.4
1,676,433 - DDA3937_RS07415 0.64 -1.5
1,676,433 - DDA3937_RS07415 0.64 -0.5
1,676,433 - DDA3937_RS07415 0.64 +0.1
1,676,433 - DDA3937_RS07415 0.64 +1.2
1,676,444 + DDA3937_RS07415 0.68 +0.8
1,676,450 + DDA3937_RS07415 0.71 +0.3
1,676,450 + DDA3937_RS07415 0.71 -2.0
1,676,451 - DDA3937_RS07415 0.71 -1.0
1,676,533 + -1.5
1,676,753 + DDA3937_RS07420 0.45 -1.0
1,676,753 + DDA3937_RS07420 0.45 -0.4
1,676,753 + DDA3937_RS07420 0.45 -2.1
1,676,753 + DDA3937_RS07420 0.45 -0.1
1,676,753 + DDA3937_RS07420 0.45 -0.4
1,676,754 - DDA3937_RS07420 0.45 +1.6

Or see this region's nucleotide sequence