Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06465

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06460 and DDA3937_RS06465 are separated by 17 nucleotidesDDA3937_RS06465 and DDA3937_RS06470 are separated by 138 nucleotides DDA3937_RS06460: DDA3937_RS06460 - 2-oxoglutarate dehydrogenase E1 component, at 1,442,155 to 1,444,962 _RS06460 DDA3937_RS06465: DDA3937_RS06465 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,444,980 to 1,446,206 _RS06465 DDA3937_RS06470: DDA3937_RS06470 - ADP-forming succinate--CoA ligase subunit beta, at 1,446,345 to 1,447,511 _RS06470 Position (kb) 1444 1445 1446 1447Strain fitness (log2 ratio) -1 0 1 2at 1444.900 kb on + strandat 1444.960 kb on + strandat 1444.968 kb on + strandat 1446.204 kb on + strandat 1446.249 kb on + strandat 1446.252 kb on + strandat 1446.252 kb on + strandat 1446.252 kb on + strandat 1446.252 kb on + strandat 1446.252 kb on + strandat 1446.259 kb on + strandat 1446.259 kb on + strandat 1446.259 kb on + strandat 1446.260 kb on - strandat 1446.260 kb on - strandat 1446.594 kb on + strand, within DDA3937_RS06470at 1447.132 kb on + strand, within DDA3937_RS06470

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,444,900 + -1.2
1,444,960 + +1.3
1,444,968 + +0.6
1,446,204 + -0.8
1,446,249 + +0.7
1,446,252 + -0.7
1,446,252 + +0.8
1,446,252 + -1.4
1,446,252 + +1.9
1,446,252 + -1.0
1,446,259 + +0.1
1,446,259 + -1.4
1,446,259 + +0.9
1,446,260 - +1.8
1,446,260 - -0.7
1,446,594 + DDA3937_RS06470 0.21 -0.1
1,447,132 + DDA3937_RS06470 0.67 +0.2

Or see this region's nucleotide sequence