Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06435

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS06425 and DDA3937_RS06430 are separated by 11 nucleotidesDDA3937_RS06430 and DDA3937_RS06435 are separated by 105 nucleotidesDDA3937_RS06435 and DDA3937_RS06440 are separated by 647 nucleotides DDA3937_RS06425: DDA3937_RS06425 - 5-oxoprolinase subunit PxpA, at 1,435,103 to 1,435,840 _RS06425 DDA3937_RS06430: DDA3937_RS06430 - endonuclease VIII, at 1,435,852 to 1,436,640 _RS06430 DDA3937_RS06435: DDA3937_RS06435 - citrate synthase, at 1,436,746 to 1,438,032 _RS06435 DDA3937_RS06440: DDA3937_RS06440 - succinate dehydrogenase cytochrome b556 subunit, at 1,438,680 to 1,439,069 _RS06440 Position (kb) 1436 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1435.821 kb on + strandat 1435.849 kb on - strandat 1435.849 kb on - strandat 1435.849 kb on - strandat 1435.849 kb on - strandat 1435.849 kb on - strandat 1435.904 kb on + strandat 1435.920 kb on - strandat 1435.992 kb on + strand, within DDA3937_RS06430at 1435.993 kb on - strand, within DDA3937_RS06430at 1436.047 kb on + strand, within DDA3937_RS06430at 1436.047 kb on + strand, within DDA3937_RS06430at 1436.047 kb on + strand, within DDA3937_RS06430at 1436.047 kb on + strand, within DDA3937_RS06430at 1436.048 kb on - strand, within DDA3937_RS06430at 1436.048 kb on - strand, within DDA3937_RS06430at 1436.048 kb on - strand, within DDA3937_RS06430at 1436.048 kb on - strand, within DDA3937_RS06430at 1436.048 kb on - strand, within DDA3937_RS06430at 1436.048 kb on - strandat 1436.048 kb on - strand, within DDA3937_RS06430at 1436.055 kb on + strand, within DDA3937_RS06430at 1436.056 kb on - strand, within DDA3937_RS06430at 1436.065 kb on + strand, within DDA3937_RS06430at 1436.082 kb on - strand, within DDA3937_RS06430at 1436.126 kb on + strand, within DDA3937_RS06430at 1436.126 kb on + strand, within DDA3937_RS06430at 1436.126 kb on + strand, within DDA3937_RS06430at 1436.127 kb on - strand, within DDA3937_RS06430at 1436.127 kb on - strand, within DDA3937_RS06430at 1436.139 kb on + strand, within DDA3937_RS06430at 1436.156 kb on - strand, within DDA3937_RS06430at 1436.156 kb on - strand, within DDA3937_RS06430at 1436.175 kb on + strand, within DDA3937_RS06430at 1436.175 kb on + strand, within DDA3937_RS06430at 1436.176 kb on - strand, within DDA3937_RS06430at 1436.310 kb on + strand, within DDA3937_RS06430at 1436.353 kb on + strand, within DDA3937_RS06430at 1436.353 kb on + strand, within DDA3937_RS06430at 1436.439 kb on - strand, within DDA3937_RS06430at 1436.439 kb on - strand, within DDA3937_RS06430at 1436.473 kb on + strand, within DDA3937_RS06430at 1436.522 kb on + strand, within DDA3937_RS06430at 1436.523 kb on - strand, within DDA3937_RS06430at 1436.523 kb on - strand, within DDA3937_RS06430at 1436.580 kb on + strandat 1436.581 kb on - strandat 1436.581 kb on - strandat 1436.615 kb on - strandat 1436.615 kb on - strandat 1436.641 kb on + strandat 1436.642 kb on - strandat 1436.642 kb on - strandat 1437.211 kb on - strand, within DDA3937_RS06435at 1437.405 kb on - strand, within DDA3937_RS06435at 1438.117 kb on - strandat 1438.117 kb on - strandat 1438.117 kb on - strandat 1438.229 kb on - strandat 1438.255 kb on - strandat 1438.257 kb on + strandat 1438.295 kb on - strandat 1438.295 kb on - strandat 1438.336 kb on - strandat 1438.362 kb on - strandat 1438.362 kb on - strandat 1438.404 kb on - strandat 1438.413 kb on + strandat 1438.414 kb on - strandat 1438.414 kb on - strandat 1438.436 kb on - strandat 1438.472 kb on + strandat 1438.472 kb on + strandat 1438.473 kb on - strandat 1438.473 kb on - strandat 1438.483 kb on + strandat 1438.483 kb on + strandat 1438.483 kb on + strandat 1438.483 kb on + strandat 1438.483 kb on + strandat 1438.483 kb on + strandat 1438.484 kb on - strandat 1438.484 kb on - strandat 1438.484 kb on - strandat 1438.486 kb on + strandat 1438.487 kb on - strandat 1438.503 kb on + strandat 1438.503 kb on + strandat 1438.503 kb on + strandat 1438.503 kb on + strandat 1438.503 kb on + strandat 1438.503 kb on + strandat 1438.504 kb on - strandat 1438.504 kb on - strandat 1438.504 kb on - strandat 1438.504 kb on - strandat 1438.504 kb on - strandat 1438.504 kb on - strandat 1438.505 kb on + strandat 1438.528 kb on - strandat 1438.538 kb on - strandat 1438.538 kb on - strandat 1438.581 kb on + strandat 1438.760 kb on + strand, within DDA3937_RS06440at 1438.761 kb on - strand, within DDA3937_RS06440at 1438.761 kb on - strand, within DDA3937_RS06440at 1438.787 kb on + strand, within DDA3937_RS06440at 1438.787 kb on + strand, within DDA3937_RS06440at 1438.787 kb on + strand, within DDA3937_RS06440at 1438.788 kb on - strand, within DDA3937_RS06440at 1438.788 kb on - strand, within DDA3937_RS06440at 1438.788 kb on - strand, within DDA3937_RS06440at 1438.788 kb on - strand, within DDA3937_RS06440at 1438.806 kb on - strand, within DDA3937_RS06440at 1438.926 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strandat 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.931 kb on + strand, within DDA3937_RS06440at 1438.932 kb on - strand, within DDA3937_RS06440at 1438.932 kb on - strand, within DDA3937_RS06440at 1438.932 kb on - strand, within DDA3937_RS06440at 1438.932 kb on - strand, within DDA3937_RS06440at 1438.936 kb on + strand, within DDA3937_RS06440at 1438.936 kb on + strand, within DDA3937_RS06440at 1438.936 kb on + strand, within DDA3937_RS06440at 1438.937 kb on - strand, within DDA3937_RS06440at 1438.937 kb on - strand, within DDA3937_RS06440at 1438.971 kb on + strand, within DDA3937_RS06440at 1439.024 kb on + strand, within DDA3937_RS06440at 1439.025 kb on - strand, within DDA3937_RS06440at 1439.025 kb on - strand, within DDA3937_RS06440at 1439.025 kb on - strand, within DDA3937_RS06440at 1439.027 kb on + strand, within DDA3937_RS06440at 1439.027 kb on + strand, within DDA3937_RS06440at 1439.027 kb on + strand, within DDA3937_RS06440at 1439.027 kb on + strand, within DDA3937_RS06440at 1439.027 kb on + strand, within DDA3937_RS06440at 1439.028 kb on - strand, within DDA3937_RS06440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
1,435,821 + -0.2
1,435,849 - +0.1
1,435,849 - -0.9
1,435,849 - -0.8
1,435,849 - -0.7
1,435,849 - +0.8
1,435,904 + +0.3
1,435,920 - +0.6
1,435,992 + DDA3937_RS06430 0.18 -0.5
1,435,993 - DDA3937_RS06430 0.18 -1.4
1,436,047 + DDA3937_RS06430 0.25 +0.3
1,436,047 + DDA3937_RS06430 0.25 -0.3
1,436,047 + DDA3937_RS06430 0.25 +1.3
1,436,047 + DDA3937_RS06430 0.25 +0.2
1,436,048 - DDA3937_RS06430 0.25 +0.5
1,436,048 - DDA3937_RS06430 0.25 -2.5
1,436,048 - DDA3937_RS06430 0.25 +0.0
1,436,048 - DDA3937_RS06430 0.25 +0.3
1,436,048 - DDA3937_RS06430 0.25 -0.3
1,436,048 - +3.4
1,436,048 - DDA3937_RS06430 0.25 +0.0
1,436,055 + DDA3937_RS06430 0.26 -1.1
1,436,056 - DDA3937_RS06430 0.26 +0.6
1,436,065 + DDA3937_RS06430 0.27 +0.2
1,436,082 - DDA3937_RS06430 0.29 -0.2
1,436,126 + DDA3937_RS06430 0.35 +0.2
1,436,126 + DDA3937_RS06430 0.35 -0.0
1,436,126 + DDA3937_RS06430 0.35 -0.2
1,436,127 - DDA3937_RS06430 0.35 +0.1
1,436,127 - DDA3937_RS06430 0.35 -0.4
1,436,139 + DDA3937_RS06430 0.36 -1.3
1,436,156 - DDA3937_RS06430 0.39 -0.8
1,436,156 - DDA3937_RS06430 0.39 +0.2
1,436,175 + DDA3937_RS06430 0.41 -0.6
1,436,175 + DDA3937_RS06430 0.41 +0.7
1,436,176 - DDA3937_RS06430 0.41 +1.8
1,436,310 + DDA3937_RS06430 0.58 +1.1
1,436,353 + DDA3937_RS06430 0.63 +2.6
1,436,353 + DDA3937_RS06430 0.63 +0.5
1,436,439 - DDA3937_RS06430 0.74 +0.8
1,436,439 - DDA3937_RS06430 0.74 +0.7
1,436,473 + DDA3937_RS06430 0.79 +1.6
1,436,522 + DDA3937_RS06430 0.85 -1.2
1,436,523 - DDA3937_RS06430 0.85 +0.8
1,436,523 - DDA3937_RS06430 0.85 -0.3
1,436,580 + -0.1
1,436,581 - +0.7
1,436,581 - +0.8
1,436,615 - -0.8
1,436,615 - +0.4
1,436,641 + +0.6
1,436,642 - -1.2
1,436,642 - -0.2
1,437,211 - DDA3937_RS06435 0.36 +0.6
1,437,405 - DDA3937_RS06435 0.51 -1.2
1,438,117 - +1.0
1,438,117 - +0.1
1,438,117 - -1.1
1,438,229 - -1.5
1,438,255 - -0.4
1,438,257 + -2.4
1,438,295 - -0.2
1,438,295 - +0.4
1,438,336 - -0.4
1,438,362 - -1.2
1,438,362 - +2.5
1,438,404 - +1.8
1,438,413 + +0.1
1,438,414 - +1.9
1,438,414 - -0.5
1,438,436 - +0.5
1,438,472 + +1.5
1,438,472 + +0.9
1,438,473 - +1.0
1,438,473 - +0.6
1,438,483 + +2.5
1,438,483 + +0.7
1,438,483 + +1.1
1,438,483 + +1.2
1,438,483 + +1.2
1,438,483 + +1.0
1,438,484 - +2.1
1,438,484 - +1.4
1,438,484 - +1.5
1,438,486 + +1.5
1,438,487 - +0.8
1,438,503 + +1.2
1,438,503 + +1.4
1,438,503 + +2.6
1,438,503 + +2.2
1,438,503 + +2.0
1,438,503 + +1.2
1,438,504 - +1.3
1,438,504 - +1.9
1,438,504 - +2.9
1,438,504 - +1.0
1,438,504 - +0.8
1,438,504 - +1.6
1,438,505 + +1.7
1,438,528 - +2.6
1,438,538 - -0.4
1,438,538 - -0.5
1,438,581 + +1.6
1,438,760 + DDA3937_RS06440 0.21 +0.8
1,438,761 - DDA3937_RS06440 0.21 +0.7
1,438,761 - DDA3937_RS06440 0.21 +2.0
1,438,787 + DDA3937_RS06440 0.27 +0.6
1,438,787 + DDA3937_RS06440 0.27 +1.1
1,438,787 + DDA3937_RS06440 0.27 +1.2
1,438,788 - DDA3937_RS06440 0.28 -1.1
1,438,788 - DDA3937_RS06440 0.28 -1.0
1,438,788 - DDA3937_RS06440 0.28 +1.2
1,438,788 - DDA3937_RS06440 0.28 +1.5
1,438,806 - DDA3937_RS06440 0.32 +1.4
1,438,926 + DDA3937_RS06440 0.63 +0.8
1,438,931 + DDA3937_RS06440 0.64 +0.8
1,438,931 + DDA3937_RS06440 0.64 -0.4
1,438,931 + DDA3937_RS06440 0.64 +0.8
1,438,931 + DDA3937_RS06440 0.64 -0.9
1,438,931 + DDA3937_RS06440 0.64 -0.2
1,438,931 + DDA3937_RS06440 0.64 +0.4
1,438,931 + DDA3937_RS06440 0.64 +0.4
1,438,931 + DDA3937_RS06440 0.64 +0.9
1,438,931 + DDA3937_RS06440 0.64 -0.8
1,438,931 + DDA3937_RS06440 0.64 +0.8
1,438,931 + DDA3937_RS06440 0.64 +0.1
1,438,931 + -1.5
1,438,931 + DDA3937_RS06440 0.64 +0.3
1,438,931 + DDA3937_RS06440 0.64 +0.5
1,438,931 + DDA3937_RS06440 0.64 -1.6
1,438,931 + DDA3937_RS06440 0.64 +1.0
1,438,932 - DDA3937_RS06440 0.65 +2.2
1,438,932 - DDA3937_RS06440 0.65 +0.0
1,438,932 - DDA3937_RS06440 0.65 +1.8
1,438,932 - DDA3937_RS06440 0.65 +0.5
1,438,936 + DDA3937_RS06440 0.66 +0.6
1,438,936 + DDA3937_RS06440 0.66 +3.0
1,438,936 + DDA3937_RS06440 0.66 +0.9
1,438,937 - DDA3937_RS06440 0.66 +0.9
1,438,937 - DDA3937_RS06440 0.66 +0.2
1,438,971 + DDA3937_RS06440 0.75 +0.3
1,439,024 + DDA3937_RS06440 0.88 +0.6
1,439,025 - DDA3937_RS06440 0.88 +2.5
1,439,025 - DDA3937_RS06440 0.88 +2.2
1,439,025 - DDA3937_RS06440 0.88 -0.6
1,439,027 + DDA3937_RS06440 0.89 +0.4
1,439,027 + DDA3937_RS06440 0.89 +0.2
1,439,027 + DDA3937_RS06440 0.89 +0.9
1,439,027 + DDA3937_RS06440 0.89 -0.6
1,439,027 + DDA3937_RS06440 0.89 +0.4
1,439,028 - DDA3937_RS06440 0.89 +1.0

Or see this region's nucleotide sequence