Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04345

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04340 and DDA3937_RS04345 are separated by 158 nucleotidesDDA3937_RS04345 and DDA3937_RS04350 are separated by 80 nucleotides DDA3937_RS04340: DDA3937_RS04340 - Nramp family divalent metal transporter, at 953,342 to 954,577 _RS04340 DDA3937_RS04345: DDA3937_RS04345 - GDP-mannose pyrophosphatase NudK, at 954,736 to 955,320 _RS04345 DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351 _RS04350 Position (kb) 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 953.843 kb on + strand, within DDA3937_RS04340at 953.843 kb on + strand, within DDA3937_RS04340at 953.844 kb on - strand, within DDA3937_RS04340at 953.844 kb on - strand, within DDA3937_RS04340at 953.844 kb on - strand, within DDA3937_RS04340at 953.844 kb on - strand, within DDA3937_RS04340at 953.844 kb on - strand, within DDA3937_RS04340at 953.962 kb on + strand, within DDA3937_RS04340at 953.962 kb on + strand, within DDA3937_RS04340at 953.962 kb on + strand, within DDA3937_RS04340at 953.963 kb on - strand, within DDA3937_RS04340at 953.963 kb on - strand, within DDA3937_RS04340at 953.963 kb on - strand, within DDA3937_RS04340at 953.963 kb on - strand, within DDA3937_RS04340at 953.965 kb on + strand, within DDA3937_RS04340at 953.966 kb on - strand, within DDA3937_RS04340at 953.966 kb on - strand, within DDA3937_RS04340at 953.981 kb on + strand, within DDA3937_RS04340at 953.981 kb on + strand, within DDA3937_RS04340at 953.981 kb on + strand, within DDA3937_RS04340at 953.982 kb on - strand, within DDA3937_RS04340at 954.036 kb on - strand, within DDA3937_RS04340at 954.046 kb on + strand, within DDA3937_RS04340at 954.168 kb on - strand, within DDA3937_RS04340at 954.168 kb on - strand, within DDA3937_RS04340at 954.304 kb on + strand, within DDA3937_RS04340at 954.393 kb on + strand, within DDA3937_RS04340at 954.393 kb on + strand, within DDA3937_RS04340at 954.394 kb on - strand, within DDA3937_RS04340at 954.505 kb on + strandat 954.505 kb on + strandat 954.505 kb on + strandat 954.511 kb on + strandat 954.512 kb on - strandat 954.526 kb on + strandat 954.527 kb on - strandat 954.527 kb on - strandat 954.527 kb on - strandat 954.548 kb on + strandat 954.664 kb on + strandat 954.665 kb on - strandat 954.697 kb on - strandat 954.697 kb on - strandat 954.697 kb on - strandat 954.697 kb on - strandat 954.699 kb on + strandat 954.699 kb on + strandat 954.700 kb on - strandat 954.722 kb on - strandat 954.750 kb on + strandat 954.751 kb on - strandat 954.753 kb on + strandat 954.754 kb on - strandat 954.798 kb on + strand, within DDA3937_RS04345at 954.799 kb on - strand, within DDA3937_RS04345at 954.799 kb on - strand, within DDA3937_RS04345at 954.799 kb on - strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.802 kb on + strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.803 kb on - strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.859 kb on + strand, within DDA3937_RS04345at 954.860 kb on - strand, within DDA3937_RS04345at 954.860 kb on - strand, within DDA3937_RS04345at 954.860 kb on - strand, within DDA3937_RS04345at 954.860 kb on - strand, within DDA3937_RS04345at 954.892 kb on + strand, within DDA3937_RS04345at 954.892 kb on + strand, within DDA3937_RS04345at 954.892 kb on + strand, within DDA3937_RS04345at 954.892 kb on + strand, within DDA3937_RS04345at 954.893 kb on - strand, within DDA3937_RS04345at 954.917 kb on + strand, within DDA3937_RS04345at 954.918 kb on - strand, within DDA3937_RS04345at 954.947 kb on - strand, within DDA3937_RS04345at 955.029 kb on + strand, within DDA3937_RS04345at 955.062 kb on - strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.090 kb on + strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.091 kb on - strand, within DDA3937_RS04345at 955.159 kb on - strand, within DDA3937_RS04345at 955.192 kb on - strand, within DDA3937_RS04345at 955.249 kb on - strand, within DDA3937_RS04345at 955.260 kb on + strand, within DDA3937_RS04345at 955.260 kb on + strand, within DDA3937_RS04345at 955.261 kb on - strand, within DDA3937_RS04345at 955.329 kb on - strandat 955.340 kb on + strandat 955.341 kb on - strandat 955.346 kb on + strandat 955.346 kb on + strandat 955.403 kb on - strandat 955.403 kb on - strandat 955.403 kb on - strandat 955.403 kb on - strandat 955.499 kb on + strand, within DDA3937_RS04350at 955.499 kb on + strand, within DDA3937_RS04350at 955.499 kb on + strand, within DDA3937_RS04350at 955.500 kb on - strand, within DDA3937_RS04350at 955.500 kb on - strand, within DDA3937_RS04350at 955.500 kb on - strand, within DDA3937_RS04350at 955.717 kb on + strand, within DDA3937_RS04350at 955.718 kb on - strand, within DDA3937_RS04350at 955.718 kb on - strand, within DDA3937_RS04350at 955.718 kb on - strand, within DDA3937_RS04350at 955.721 kb on - strand, within DDA3937_RS04350at 955.721 kb on - strand, within DDA3937_RS04350at 955.726 kb on + strand, within DDA3937_RS04350at 955.727 kb on - strand, within DDA3937_RS04350at 955.727 kb on - strand, within DDA3937_RS04350at 955.727 kb on - strand, within DDA3937_RS04350at 955.727 kb on - strand, within DDA3937_RS04350at 955.727 kb on - strand, within DDA3937_RS04350at 955.730 kb on + strand, within DDA3937_RS04350at 955.798 kb on + strand, within DDA3937_RS04350at 955.807 kb on + strand, within DDA3937_RS04350at 955.808 kb on - strand, within DDA3937_RS04350at 955.808 kb on - strand, within DDA3937_RS04350at 955.837 kb on + strand, within DDA3937_RS04350at 955.837 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.983 kb on + strand, within DDA3937_RS04350at 955.984 kb on - strand, within DDA3937_RS04350at 955.984 kb on - strand, within DDA3937_RS04350at 956.000 kb on - strand, within DDA3937_RS04350at 956.000 kb on - strandat 956.000 kb on - strand, within DDA3937_RS04350at 956.024 kb on + strandat 956.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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953,843 + DDA3937_RS04340 0.41 -2.3
953,843 + DDA3937_RS04340 0.41 -1.7
953,844 - DDA3937_RS04340 0.41 +1.4
953,844 - DDA3937_RS04340 0.41 -3.3
953,844 - DDA3937_RS04340 0.41 -1.6
953,844 - DDA3937_RS04340 0.41 -1.0
953,844 - DDA3937_RS04340 0.41 -2.2
953,962 + DDA3937_RS04340 0.50 +0.6
953,962 + DDA3937_RS04340 0.50 -0.3
953,962 + DDA3937_RS04340 0.50 -0.1
953,963 - DDA3937_RS04340 0.50 +0.1
953,963 - DDA3937_RS04340 0.50 -3.5
953,963 - DDA3937_RS04340 0.50 +0.1
953,963 - DDA3937_RS04340 0.50 +0.5
953,965 + DDA3937_RS04340 0.50 +2.0
953,966 - DDA3937_RS04340 0.50 -1.5
953,966 - DDA3937_RS04340 0.50 -0.6
953,981 + DDA3937_RS04340 0.52 -0.1
953,981 + DDA3937_RS04340 0.52 +0.3
953,981 + DDA3937_RS04340 0.52 -1.4
953,982 - DDA3937_RS04340 0.52 +1.1
954,036 - DDA3937_RS04340 0.56 -1.3
954,046 + DDA3937_RS04340 0.57 -0.0
954,168 - DDA3937_RS04340 0.67 -0.2
954,168 - DDA3937_RS04340 0.67 +0.3
954,304 + DDA3937_RS04340 0.78 -0.3
954,393 + DDA3937_RS04340 0.85 -0.6
954,393 + DDA3937_RS04340 0.85 -1.3
954,394 - DDA3937_RS04340 0.85 -2.6
954,505 + -2.1
954,505 + +0.2
954,505 + +1.6
954,511 + -0.6
954,512 - -2.8
954,526 + +0.6
954,527 - +0.2
954,527 - -0.3
954,527 - -0.8
954,548 + -0.6
954,664 + +0.9
954,665 - -0.2
954,697 - +0.4
954,697 - +0.4
954,697 - +0.3
954,697 - -1.5
954,699 + -0.2
954,699 + -0.0
954,700 - +0.0
954,722 - +0.5
954,750 + -1.0
954,751 - +2.0
954,753 + +0.6
954,754 - +0.3
954,798 + DDA3937_RS04345 0.11 -0.2
954,799 - DDA3937_RS04345 0.11 +0.5
954,799 - DDA3937_RS04345 0.11 -0.1
954,799 - DDA3937_RS04345 0.11 +0.2
954,802 + DDA3937_RS04345 0.11 +1.6
954,802 + DDA3937_RS04345 0.11 -1.0
954,802 + DDA3937_RS04345 0.11 +2.7
954,802 + DDA3937_RS04345 0.11 -0.4
954,802 + DDA3937_RS04345 0.11 +0.6
954,802 + DDA3937_RS04345 0.11 -0.1
954,802 + DDA3937_RS04345 0.11 +0.3
954,802 + DDA3937_RS04345 0.11 +1.4
954,802 + DDA3937_RS04345 0.11 -0.3
954,802 + DDA3937_RS04345 0.11 +0.3
954,803 - DDA3937_RS04345 0.11 -1.0
954,803 - DDA3937_RS04345 0.11 +1.4
954,803 - DDA3937_RS04345 0.11 -0.5
954,803 - DDA3937_RS04345 0.11 +1.6
954,803 - DDA3937_RS04345 0.11 +1.5
954,803 - DDA3937_RS04345 0.11 +1.7
954,803 - DDA3937_RS04345 0.11 +1.6
954,859 + DDA3937_RS04345 0.21 +0.1
954,859 + DDA3937_RS04345 0.21 +1.5
954,859 + DDA3937_RS04345 0.21 +1.2
954,859 + DDA3937_RS04345 0.21 +4.1
954,859 + DDA3937_RS04345 0.21 -0.4
954,859 + DDA3937_RS04345 0.21 +1.2
954,860 - DDA3937_RS04345 0.21 +2.2
954,860 - DDA3937_RS04345 0.21 +0.9
954,860 - DDA3937_RS04345 0.21 +0.1
954,860 - DDA3937_RS04345 0.21 +1.1
954,892 + DDA3937_RS04345 0.27 +1.0
954,892 + DDA3937_RS04345 0.27 +1.0
954,892 + DDA3937_RS04345 0.27 -0.0
954,892 + DDA3937_RS04345 0.27 -1.5
954,893 - DDA3937_RS04345 0.27 +0.4
954,917 + DDA3937_RS04345 0.31 +1.2
954,918 - DDA3937_RS04345 0.31 +0.3
954,947 - DDA3937_RS04345 0.36 -0.4
955,029 + DDA3937_RS04345 0.50 +0.7
955,062 - DDA3937_RS04345 0.56 +1.4
955,090 + DDA3937_RS04345 0.61 +0.6
955,090 + DDA3937_RS04345 0.61 +0.9
955,090 + DDA3937_RS04345 0.61 -1.3
955,090 + DDA3937_RS04345 0.61 +0.7
955,090 + DDA3937_RS04345 0.61 +0.1
955,090 + DDA3937_RS04345 0.61 -1.8
955,090 + DDA3937_RS04345 0.61 +1.3
955,090 + DDA3937_RS04345 0.61 -0.1
955,091 - DDA3937_RS04345 0.61 +0.9
955,091 - DDA3937_RS04345 0.61 -1.6
955,091 - DDA3937_RS04345 0.61 -0.5
955,091 - DDA3937_RS04345 0.61 +0.6
955,091 - DDA3937_RS04345 0.61 -2.1
955,091 - DDA3937_RS04345 0.61 +0.4
955,091 - DDA3937_RS04345 0.61 +1.1
955,091 - DDA3937_RS04345 0.61 +0.4
955,091 - DDA3937_RS04345 0.61 -0.2
955,091 - DDA3937_RS04345 0.61 -1.7
955,159 - DDA3937_RS04345 0.72 -1.5
955,192 - DDA3937_RS04345 0.78 +1.2
955,249 - DDA3937_RS04345 0.88 +0.2
955,260 + DDA3937_RS04345 0.90 -0.9
955,260 + DDA3937_RS04345 0.90 +0.4
955,261 - DDA3937_RS04345 0.90 -0.5
955,329 - -0.6
955,340 + -0.7
955,341 - +0.8
955,346 + -0.0
955,346 + -1.5
955,403 - -1.2
955,403 - +0.7
955,403 - -0.2
955,403 - -0.8
955,499 + DDA3937_RS04350 0.10 +3.0
955,499 + DDA3937_RS04350 0.10 -1.3
955,499 + DDA3937_RS04350 0.10 +2.0
955,500 - DDA3937_RS04350 0.10 -0.0
955,500 - DDA3937_RS04350 0.10 +0.7
955,500 - DDA3937_RS04350 0.10 +1.8
955,717 + DDA3937_RS04350 0.33 +2.4
955,718 - DDA3937_RS04350 0.33 +2.0
955,718 - DDA3937_RS04350 0.33 -0.3
955,718 - DDA3937_RS04350 0.33 -0.6
955,721 - DDA3937_RS04350 0.34 -0.6
955,721 - DDA3937_RS04350 0.34 -0.9
955,726 + DDA3937_RS04350 0.34 +0.4
955,727 - DDA3937_RS04350 0.34 -1.0
955,727 - DDA3937_RS04350 0.34 -1.4
955,727 - DDA3937_RS04350 0.34 -0.3
955,727 - DDA3937_RS04350 0.34 +0.4
955,727 - DDA3937_RS04350 0.34 +1.7
955,730 + DDA3937_RS04350 0.35 -2.3
955,798 + DDA3937_RS04350 0.42 +1.1
955,807 + DDA3937_RS04350 0.43 -0.7
955,808 - DDA3937_RS04350 0.43 -0.3
955,808 - DDA3937_RS04350 0.43 +0.2
955,837 + DDA3937_RS04350 0.46 +0.6
955,837 + DDA3937_RS04350 0.46 -1.6
955,983 + DDA3937_RS04350 0.61 +0.2
955,983 + DDA3937_RS04350 0.61 -0.2
955,983 + DDA3937_RS04350 0.61 -0.0
955,983 + DDA3937_RS04350 0.61 +0.9
955,983 + DDA3937_RS04350 0.61 -0.0
955,983 + DDA3937_RS04350 0.61 +1.1
955,984 - DDA3937_RS04350 0.61 -0.2
955,984 - DDA3937_RS04350 0.61 -0.7
956,000 - DDA3937_RS04350 0.63 -2.2
956,000 - -0.6
956,000 - DDA3937_RS04350 0.63 +0.8
956,024 + +3.0
956,313 + -0.0

Or see this region's nucleotide sequence