Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04040

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04035 and DDA3937_RS04040 are separated by 45 nucleotidesDDA3937_RS04040 and DDA3937_RS04045 overlap by 4 nucleotidesDDA3937_RS04045 and DDA3937_RS04050 are separated by 474 nucleotides DDA3937_RS04035: DDA3937_RS04035 - TrbI/VirB10 family protein, at 900,101 to 901,339 _RS04035 DDA3937_RS04040: DDA3937_RS04040 - type II toxin-antitoxin system RelE/ParE family toxin, at 901,385 to 901,696 _RS04040 DDA3937_RS04045: DDA3937_RS04045 - DNA-damage-inducible protein J, at 901,693 to 901,977 _RS04045 DDA3937_RS04050: DDA3937_RS04050 - AAA family ATPase, at 902,452 to 903,081 _RS04050 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2 3at 900.403 kb on - strand, within DDA3937_RS04035at 900.494 kb on + strand, within DDA3937_RS04035at 900.495 kb on - strand, within DDA3937_RS04035at 900.632 kb on - strand, within DDA3937_RS04035at 900.794 kb on - strand, within DDA3937_RS04035at 900.905 kb on + strand, within DDA3937_RS04035at 900.905 kb on + strand, within DDA3937_RS04035at 900.906 kb on - strand, within DDA3937_RS04035at 900.906 kb on - strand, within DDA3937_RS04035at 900.924 kb on - strand, within DDA3937_RS04035at 901.022 kb on + strand, within DDA3937_RS04035at 901.092 kb on + strand, within DDA3937_RS04035at 901.092 kb on + strand, within DDA3937_RS04035at 901.093 kb on - strandat 901.093 kb on - strand, within DDA3937_RS04035at 901.147 kb on + strand, within DDA3937_RS04035at 901.147 kb on + strand, within DDA3937_RS04035at 901.147 kb on + strand, within DDA3937_RS04035at 901.150 kb on + strand, within DDA3937_RS04035at 901.151 kb on - strand, within DDA3937_RS04035at 901.151 kb on - strand, within DDA3937_RS04035at 901.151 kb on - strand, within DDA3937_RS04035at 901.267 kb on + strandat 901.293 kb on + strandat 901.293 kb on + strandat 901.431 kb on - strand, within DDA3937_RS04040at 901.441 kb on + strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.442 kb on - strand, within DDA3937_RS04040at 901.445 kb on + strand, within DDA3937_RS04040at 901.446 kb on - strand, within DDA3937_RS04040at 901.446 kb on - strand, within DDA3937_RS04040at 901.446 kb on - strand, within DDA3937_RS04040at 901.473 kb on + strand, within DDA3937_RS04040at 901.473 kb on + strand, within DDA3937_RS04040at 901.483 kb on + strand, within DDA3937_RS04040at 901.664 kb on - strand, within DDA3937_RS04040at 901.929 kb on + strandat 901.966 kb on + strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.967 kb on - strandat 901.990 kb on + strandat 902.026 kb on + strandat 902.079 kb on + strandat 902.080 kb on - strandat 902.134 kb on + strandat 902.134 kb on + strandat 902.135 kb on - strandat 902.135 kb on - strandat 902.135 kb on - strandat 902.137 kb on + strandat 902.138 kb on - strandat 902.162 kb on + strandat 902.162 kb on + strandat 902.181 kb on + strandat 902.181 kb on + strandat 902.221 kb on + strandat 902.221 kb on + strandat 902.227 kb on + strandat 902.235 kb on + strandat 902.235 kb on + strandat 902.236 kb on - strandat 902.239 kb on + strandat 902.239 kb on + strandat 902.239 kb on + strandat 902.240 kb on - strandat 902.240 kb on - strandat 902.240 kb on - strandat 902.240 kb on - strandat 902.242 kb on - strandat 902.245 kb on + strandat 902.245 kb on + strandat 902.249 kb on + strandat 902.261 kb on - strandat 902.296 kb on - strandat 902.296 kb on - strandat 902.298 kb on - strandat 902.298 kb on - strandat 902.298 kb on - strandat 902.348 kb on + strandat 902.379 kb on - strandat 902.397 kb on + strandat 902.406 kb on + strandat 902.407 kb on - strandat 902.435 kb on - strandat 902.436 kb on + strandat 902.436 kb on + strandat 902.436 kb on + strandat 902.437 kb on - strandat 902.437 kb on - strandat 902.437 kb on - strandat 902.438 kb on + strandat 902.439 kb on - strandat 902.440 kb on + strandat 902.469 kb on + strandat 902.514 kb on + strandat 902.580 kb on + strand, within DDA3937_RS04050at 902.602 kb on - strand, within DDA3937_RS04050at 902.622 kb on + strand, within DDA3937_RS04050at 902.622 kb on + strand, within DDA3937_RS04050

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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900,403 - DDA3937_RS04035 0.24 +0.6
900,494 + DDA3937_RS04035 0.32 -2.4
900,495 - DDA3937_RS04035 0.32 +0.5
900,632 - DDA3937_RS04035 0.43 +0.3
900,794 - DDA3937_RS04035 0.56 -0.8
900,905 + DDA3937_RS04035 0.65 -0.0
900,905 + DDA3937_RS04035 0.65 +0.1
900,906 - DDA3937_RS04035 0.65 -0.9
900,906 - DDA3937_RS04035 0.65 -1.3
900,924 - DDA3937_RS04035 0.66 -2.0
901,022 + DDA3937_RS04035 0.74 -1.3
901,092 + DDA3937_RS04035 0.80 +1.3
901,092 + DDA3937_RS04035 0.80 +0.6
901,093 - +2.0
901,093 - DDA3937_RS04035 0.80 -1.5
901,147 + DDA3937_RS04035 0.84 +0.3
901,147 + DDA3937_RS04035 0.84 -1.2
901,147 + DDA3937_RS04035 0.84 -1.2
901,150 + DDA3937_RS04035 0.85 -1.3
901,151 - DDA3937_RS04035 0.85 +0.8
901,151 - DDA3937_RS04035 0.85 +2.3
901,151 - DDA3937_RS04035 0.85 +0.3
901,267 + -0.0
901,293 + +0.0
901,293 + +0.3
901,431 - DDA3937_RS04040 0.15 +0.2
901,441 + DDA3937_RS04040 0.18 +2.4
901,442 - DDA3937_RS04040 0.18 -0.2
901,442 - DDA3937_RS04040 0.18 +2.0
901,442 - DDA3937_RS04040 0.18 -0.7
901,442 - DDA3937_RS04040 0.18 +0.2
901,442 - DDA3937_RS04040 0.18 -2.5
901,442 - DDA3937_RS04040 0.18 +0.7
901,442 - DDA3937_RS04040 0.18 -0.4
901,442 - DDA3937_RS04040 0.18 -0.7
901,442 - DDA3937_RS04040 0.18 -0.6
901,445 + DDA3937_RS04040 0.19 -0.6
901,446 - DDA3937_RS04040 0.20 +0.2
901,446 - DDA3937_RS04040 0.20 -0.1
901,446 - DDA3937_RS04040 0.20 -0.6
901,473 + DDA3937_RS04040 0.28 +1.7
901,473 + DDA3937_RS04040 0.28 +0.6
901,483 + DDA3937_RS04040 0.31 +0.1
901,664 - DDA3937_RS04040 0.89 -0.7
901,929 + +2.0
901,966 + +0.4
901,967 - -0.6
901,967 - +1.3
901,967 - -0.4
901,967 - -2.0
901,967 - -1.3
901,967 - -0.5
901,967 - +0.5
901,967 - -1.3
901,967 - +1.2
901,990 + -0.1
902,026 + -0.2
902,079 + -0.1
902,080 - -0.0
902,134 + +0.5
902,134 + -0.8
902,135 - -0.0
902,135 - +0.9
902,135 - -2.3
902,137 + -0.3
902,138 - +0.7
902,162 + -0.8
902,162 + +0.4
902,181 + +0.5
902,181 + -0.2
902,221 + -0.7
902,221 + -2.3
902,227 + -0.3
902,235 + -2.5
902,235 + +0.1
902,236 - +0.8
902,239 + -1.5
902,239 + +1.0
902,239 + -1.5
902,240 - -0.2
902,240 - -1.3
902,240 - -1.5
902,240 - -0.0
902,242 - -1.4
902,245 + +0.6
902,245 + -0.0
902,249 + -0.7
902,261 - +1.0
902,296 - -1.4
902,296 - +0.1
902,298 - +0.6
902,298 - +0.4
902,298 - -0.6
902,348 + -2.3
902,379 - -1.8
902,397 + -1.2
902,406 + -0.6
902,407 - -0.7
902,435 - +0.8
902,436 + +3.3
902,436 + -1.0
902,436 + -0.0
902,437 - -1.0
902,437 - -0.8
902,437 - -1.4
902,438 + -1.8
902,439 - +0.4
902,440 + -1.8
902,469 + +0.4
902,514 + +0.2
902,580 + DDA3937_RS04050 0.20 +1.0
902,602 - DDA3937_RS04050 0.24 +1.0
902,622 + DDA3937_RS04050 0.27 +0.5
902,622 + DDA3937_RS04050 0.27 +0.9

Or see this region's nucleotide sequence