Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03480 and DDA3937_RS03485 are separated by 770 nucleotides DDA3937_RS03485 and DDA3937_RS03490 are separated by 592 nucleotides
DDA3937_RS03480: DDA3937_RS03480 - acetate--CoA ligase, at 761,628 to 763,589
_RS03480
DDA3937_RS03485: DDA3937_RS03485 - hypothetical protein, at 764,360 to 764,752
_RS03485
DDA3937_RS03490: DDA3937_RS03490 - TonB-dependent siderophore receptor, at 765,345 to 767,732
_RS03490
Position (kb) 764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.366 kb on - strand, within DDA3937_RS03480 at 763.366 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.435 kb on + strand at 763.435 kb on + strand at 763.507 kb on + strand at 763.508 kb on - strand at 763.518 kb on - strand at 763.518 kb on - strand at 763.520 kb on - strand at 763.563 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.566 kb on - strand at 763.574 kb on + strand at 763.574 kb on + strand at 763.574 kb on + strand at 763.575 kb on - strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.578 kb on - strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.580 kb on - strand at 763.580 kb on - strand at 763.589 kb on + strand at 763.615 kb on + strand at 763.615 kb on + strand at 763.616 kb on - strand at 763.618 kb on + strand at 763.618 kb on + strand at 763.618 kb on + strand at 763.619 kb on - strand at 763.630 kb on + strand at 763.631 kb on - strand at 763.634 kb on + strand at 763.634 kb on + strand at 763.635 kb on - strand at 763.637 kb on + strand at 763.637 kb on + strand at 763.717 kb on - strand at 763.717 kb on - strand at 763.722 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.729 kb on - strand at 763.729 kb on - strand at 763.833 kb on + strand at 763.868 kb on + strand at 763.874 kb on + strand at 763.875 kb on - strand at 763.925 kb on - strand at 763.956 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.959 kb on - strand at 763.959 kb on - strand at 763.959 kb on - strand at 763.964 kb on + strand at 763.964 kb on + strand at 763.975 kb on - strand at 763.989 kb on + strand at 763.990 kb on - strand at 764.043 kb on + strand at 764.056 kb on + strand at 764.057 kb on - strand at 764.057 kb on - strand at 764.058 kb on + strand at 764.079 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.124 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.134 kb on + strand at 764.137 kb on + strand at 764.137 kb on + strand at 764.137 kb on + strand at 764.138 kb on - strand at 764.138 kb on - strand at 764.141 kb on + strand at 764.141 kb on + strand at 764.141 kb on + strand at 764.189 kb on + strand at 764.275 kb on + strand at 764.311 kb on - strand at 764.340 kb on + strand at 764.340 kb on + strand at 764.359 kb on + strand at 764.359 kb on + strand at 764.360 kb on - strand at 764.360 kb on - strand at 764.371 kb on - strand at 764.400 kb on + strand at 764.400 kb on + strand, within DDA3937_RS03485 at 764.460 kb on + strand, within DDA3937_RS03485 at 764.482 kb on + strand, within DDA3937_RS03485 at 764.654 kb on - strand, within DDA3937_RS03485 at 764.654 kb on - strand, within DDA3937_RS03485 at 764.750 kb on + strand at 764.771 kb on + strand at 764.779 kb on + strand at 764.780 kb on - strand at 764.780 kb on - strand at 764.785 kb on - strand at 764.796 kb on + strand at 764.797 kb on - strand at 764.832 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.851 kb on + strand at 764.886 kb on - strand at 764.886 kb on - strand at 764.892 kb on - strand at 764.892 kb on - strand at 764.922 kb on + strand at 764.937 kb on - strand at 764.941 kb on - strand at 764.954 kb on - strand at 764.959 kb on + strand at 764.959 kb on + strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.976 kb on + strand at 764.987 kb on - strand at 764.987 kb on - strand at 765.040 kb on - strand at 765.055 kb on + strand at 765.056 kb on - strand at 765.059 kb on + strand at 765.060 kb on - strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.080 kb on - strand at 765.102 kb on + strand at 765.209 kb on + strand at 765.294 kb on + strand at 765.295 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.399 kb on + strand at 765.400 kb on - strand at 765.460 kb on - strand at 765.460 kb on - strand at 765.531 kb on + strand at 765.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 763,365 + DDA3937_RS03480 0.89 +2.4 763,365 + DDA3937_RS03480 0.89 +1.1 763,365 + DDA3937_RS03480 0.89 +0.0 763,365 + DDA3937_RS03480 0.89 +1.5 763,365 + DDA3937_RS03480 0.89 +0.8 763,365 + DDA3937_RS03480 0.89 -2.0 763,365 + DDA3937_RS03480 0.89 -0.4 763,365 + DDA3937_RS03480 0.89 +0.7 763,365 + DDA3937_RS03480 0.89 -1.0 763,366 - DDA3937_RS03480 0.89 -0.6 763,366 - DDA3937_RS03480 0.89 +0.2 763,371 - DDA3937_RS03480 0.89 +1.0 763,371 - DDA3937_RS03480 0.89 -0.8 763,371 - DDA3937_RS03480 0.89 -2.0 763,435 + +0.3 763,435 + -0.2 763,507 + -1.0 763,508 - -0.3 763,518 - +0.4 763,518 - +2.6 763,520 - +0.4 763,563 + +0.5 763,565 + +2.7 763,565 + -0.7 763,565 + +1.9 763,565 + +0.1 763,566 - -1.2 763,574 + -0.2 763,574 + +1.5 763,574 + +1.6 763,575 - -2.8 763,577 + +0.3 763,577 + +1.1 763,577 + +0.7 763,577 + -0.7 763,578 - +0.0 763,579 + +0.2 763,579 + -0.1 763,579 + +1.6 763,579 + -0.2 763,580 - +0.0 763,580 - -1.9 763,589 + +1.3 763,615 + +0.9 763,615 + +1.0 763,616 - -0.2 763,618 + +0.4 763,618 + -1.2 763,618 + +0.8 763,619 - -0.1 763,630 + -0.1 763,631 - +1.0 763,634 + +1.4 763,634 + -0.4 763,635 - -0.7 763,637 + -2.3 763,637 + +0.3 763,717 - -1.0 763,717 - +0.4 763,722 + +0.9 763,728 + +0.4 763,728 + +0.3 763,728 + +1.0 763,728 + +1.1 763,729 - +1.0 763,729 - -0.8 763,833 + -1.0 763,868 + -0.6 763,874 + +1.2 763,875 - +1.6 763,925 - -1.3 763,956 + -1.0 763,958 + -2.3 763,958 + -1.1 763,958 + -3.2 763,958 + +0.1 763,959 - -1.0 763,959 - -0.8 763,959 - +1.0 763,964 + +1.0 763,964 + +0.7 763,975 - -1.8 763,989 + +0.5 763,990 - -1.8 764,043 + -0.4 764,056 + +0.3 764,057 - +1.0 764,057 - -1.4 764,058 + -1.6 764,079 + +0.2 764,083 + +0.9 764,083 + -1.6 764,083 + -1.4 764,083 + +0.5 764,083 + -1.7 764,124 + -0.4 764,132 + -1.0 764,132 + +0.3 764,132 + +0.3 764,132 + -0.3 764,134 + -2.4 764,137 + +1.1 764,137 + +0.7 764,137 + +2.0 764,138 - -2.1 764,138 - +0.2 764,141 + -1.4 764,141 + +0.1 764,141 + +0.9 764,189 + +2.8 764,275 + +1.7 764,311 - +1.0 764,340 + +1.0 764,340 + +2.3 764,359 + -3.1 764,359 + -1.0 764,360 - +1.3 764,360 - -0.2 764,371 - -0.6 764,400 + +0.0 764,400 + DDA3937_RS03485 0.10 -1.3 764,460 + DDA3937_RS03485 0.25 -1.6 764,482 + DDA3937_RS03485 0.31 -2.4 764,654 - DDA3937_RS03485 0.75 -2.0 764,654 - DDA3937_RS03485 0.75 +0.4 764,750 + -0.9 764,771 + -0.4 764,779 + -1.1 764,780 - +0.4 764,780 - -0.7 764,785 - +1.8 764,796 + +2.0 764,797 - +1.8 764,832 + +2.8 764,841 + +1.2 764,841 + -0.9 764,841 + -0.6 764,841 + -0.5 764,842 - -0.5 764,842 - -0.4 764,842 - -0.3 764,842 - +0.3 764,842 - +2.3 764,842 - -1.4 764,851 + +0.3 764,886 - -2.0 764,886 - -1.9 764,892 - +0.3 764,892 - -1.4 764,922 + +0.2 764,937 - -1.9 764,941 - -1.3 764,954 - -1.0 764,959 + -0.7 764,959 + +0.2 764,960 - +0.7 764,960 - +0.7 764,960 - +1.6 764,960 - +0.0 764,960 - -0.2 764,976 + +1.3 764,987 - +1.3 764,987 - +0.3 765,040 - +1.1 765,055 + -0.3 765,056 - -1.3 765,059 + -2.7 765,060 - -0.4 765,079 + -1.0 765,079 + +0.4 765,079 + +1.0 765,079 + -0.8 765,079 + +0.1 765,080 - +0.4 765,102 + -1.0 765,209 + +0.0 765,294 + +0.5 765,295 - -1.2 765,345 - -2.2 765,345 - +1.2 765,345 - -0.5 765,345 - +0.3 765,345 - -1.6 765,354 + -0.3 765,354 + +0.8 765,354 + -0.0 765,354 + -2.9 765,354 + +2.1 765,354 + +0.2 765,355 - -0.3 765,355 - +2.3 765,355 - -0.5 765,355 - +0.5 765,399 + +1.2 765,400 - +0.4 765,460 - -1.3 765,460 - +0.4 765,531 + -2.9 765,532 - -2.2
Or see this region's nucleotide sequence