Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03140 and DDA3937_RS03145 are separated by 163 nucleotides DDA3937_RS03145 and DDA3937_RS03150 are separated by 71 nucleotides
DDA3937_RS03140: DDA3937_RS03140 - thymidine phosphorylase, at 691,770 to 693,101
_RS03140
DDA3937_RS03145: DDA3937_RS03145 - phosphopentomutase, at 693,265 to 694,488
_RS03145
DDA3937_RS03150: DDA3937_RS03150 - purine-nucleoside phosphorylase, at 694,560 to 695,285
_RS03150
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.400 kb on - strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.456 kb on + strand, within DDA3937_RS03140 at 692.457 kb on - strand, within DDA3937_RS03140 at 692.536 kb on + strand, within DDA3937_RS03140 at 692.537 kb on - strand, within DDA3937_RS03140 at 692.758 kb on - strand, within DDA3937_RS03140 at 692.766 kb on + strand, within DDA3937_RS03140 at 692.767 kb on - strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.855 kb on - strand, within DDA3937_RS03140 at 693.072 kb on + strand at 693.072 kb on + strand at 693.072 kb on + strand at 693.124 kb on + strand at 693.125 kb on - strand at 693.133 kb on + strand at 693.134 kb on - strand at 693.134 kb on - strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.158 kb on - strand at 693.173 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.194 kb on - strand at 693.205 kb on + strand at 693.206 kb on - strand at 693.209 kb on + strand at 693.210 kb on - strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.225 kb on + strand at 693.225 kb on + strand at 693.226 kb on - strand at 693.240 kb on + strand at 693.258 kb on + strand at 693.258 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.263 kb on - strand at 693.279 kb on + strand at 693.279 kb on + strand at 693.280 kb on - strand at 693.611 kb on - strand, within DDA3937_RS03145 at 693.835 kb on + strand, within DDA3937_RS03145 at 694.054 kb on + strand, within DDA3937_RS03145 at 694.089 kb on + strand at 694.153 kb on - strand, within DDA3937_RS03145 at 694.516 kb on - strand at 694.540 kb on - strand at 694.565 kb on + strand at 694.565 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.574 kb on + strand at 694.575 kb on - strand at 694.575 kb on - strand at 694.575 kb on - strand at 694.575 kb on - strand at 694.575 kb on - strand at 694.641 kb on + strand, within DDA3937_RS03150 at 694.641 kb on + strand, within DDA3937_RS03150 at 694.642 kb on - strand, within DDA3937_RS03150 at 694.642 kb on - strand, within DDA3937_RS03150 at 694.694 kb on + strand, within DDA3937_RS03150 at 694.716 kb on + strand, within DDA3937_RS03150 at 694.716 kb on + strand at 694.716 kb on + strand, within DDA3937_RS03150 at 694.717 kb on - strand, within DDA3937_RS03150 at 694.757 kb on + strand, within DDA3937_RS03150 at 694.776 kb on + strand, within DDA3937_RS03150 at 694.776 kb on + strand, within DDA3937_RS03150 at 694.923 kb on - strand, within DDA3937_RS03150 at 694.923 kb on - strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.041 kb on - strand, within DDA3937_RS03150 at 695.041 kb on - strand, within DDA3937_RS03150 at 695.118 kb on + strand, within DDA3937_RS03150 at 695.118 kb on + strand, within DDA3937_RS03150 at 695.125 kb on + strand, within DDA3937_RS03150 at 695.126 kb on - strand, within DDA3937_RS03150 at 695.270 kb on + strand at 695.296 kb on - strand at 695.296 kb on - strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.299 kb on - strand at 695.299 kb on - strand at 695.299 kb on - strand at 695.306 kb on + strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 692,272 - DDA3937_RS03140 0.38 -0.7 692,272 - DDA3937_RS03140 0.38 +1.6 692,400 - DDA3937_RS03140 0.47 -0.2 692,409 + DDA3937_RS03140 0.48 +1.0 692,409 + DDA3937_RS03140 0.48 +0.0 692,410 - DDA3937_RS03140 0.48 +1.7 692,410 - DDA3937_RS03140 0.48 +1.2 692,410 - DDA3937_RS03140 0.48 -0.3 692,453 + DDA3937_RS03140 0.51 +0.4 692,453 + DDA3937_RS03140 0.51 +1.5 692,453 + DDA3937_RS03140 0.51 -1.3 692,454 - DDA3937_RS03140 0.51 +0.5 692,454 - DDA3937_RS03140 0.51 -1.5 692,454 - DDA3937_RS03140 0.51 +1.0 692,454 - DDA3937_RS03140 0.51 -0.6 692,454 - DDA3937_RS03140 0.51 +0.5 692,454 - DDA3937_RS03140 0.51 +0.4 692,454 - DDA3937_RS03140 0.51 -0.3 692,456 + DDA3937_RS03140 0.52 +0.8 692,457 - DDA3937_RS03140 0.52 +0.7 692,536 + DDA3937_RS03140 0.58 -1.0 692,537 - DDA3937_RS03140 0.58 -1.3 692,758 - DDA3937_RS03140 0.74 +0.8 692,766 + DDA3937_RS03140 0.75 -0.2 692,767 - DDA3937_RS03140 0.75 +0.5 692,854 + DDA3937_RS03140 0.81 -1.5 692,854 + DDA3937_RS03140 0.81 +0.3 692,855 - DDA3937_RS03140 0.81 -2.4 693,072 + -2.4 693,072 + +0.7 693,072 + +0.5 693,124 + -1.0 693,125 - +0.9 693,133 + +0.7 693,134 - -0.1 693,134 - +0.6 693,141 + -2.3 693,141 + -0.7 693,141 + -2.7 693,157 + +0.2 693,157 + -0.4 693,157 + -1.5 693,158 - +1.5 693,173 + -0.7 693,184 + +0.7 693,184 + +0.8 693,184 + +0.2 693,184 + +1.0 693,189 + +1.2 693,189 + -1.8 693,189 + +0.2 693,193 + -0.8 693,193 + +1.3 693,193 + -1.5 693,193 + -0.0 693,194 - +0.0 693,205 + -1.4 693,206 - +0.8 693,209 + -0.8 693,210 - +0.2 693,221 + -0.3 693,221 + +0.2 693,221 + +1.8 693,225 + -0.8 693,225 + -0.6 693,226 - +2.3 693,240 + -1.8 693,258 + -0.5 693,258 + +1.0 693,262 + -1.5 693,262 + -1.3 693,262 + +0.9 693,263 - -1.0 693,279 + +0.0 693,279 + -0.4 693,280 - -0.5 693,611 - DDA3937_RS03145 0.28 +1.8 693,835 + DDA3937_RS03145 0.47 -1.3 694,054 + DDA3937_RS03145 0.64 +0.6 694,089 + -0.6 694,153 - DDA3937_RS03145 0.73 -1.0 694,516 - -1.3 694,540 - +1.0 694,565 + +2.0 694,565 + -0.8 694,574 + +0.6 694,574 + -0.6 694,574 + -0.3 694,574 + -2.3 694,574 + -0.3 694,574 + -1.0 694,574 + -1.8 694,575 - -0.5 694,575 - -2.4 694,575 - +1.3 694,575 - +0.3 694,575 - +0.2 694,641 + DDA3937_RS03150 0.11 +2.6 694,641 + DDA3937_RS03150 0.11 -0.4 694,642 - DDA3937_RS03150 0.11 -1.3 694,642 - DDA3937_RS03150 0.11 -0.6 694,694 + DDA3937_RS03150 0.18 -1.7 694,716 + DDA3937_RS03150 0.21 +0.7 694,716 + -1.3 694,716 + DDA3937_RS03150 0.21 +0.0 694,717 - DDA3937_RS03150 0.22 -1.0 694,757 + DDA3937_RS03150 0.27 -2.0 694,776 + DDA3937_RS03150 0.30 +0.4 694,776 + DDA3937_RS03150 0.30 +0.0 694,923 - DDA3937_RS03150 0.50 -0.7 694,923 - DDA3937_RS03150 0.50 +0.0 695,040 + DDA3937_RS03150 0.66 -0.2 695,040 + DDA3937_RS03150 0.66 +0.0 695,040 + DDA3937_RS03150 0.66 +0.3 695,040 + DDA3937_RS03150 0.66 -0.8 695,041 - DDA3937_RS03150 0.66 -0.6 695,041 - DDA3937_RS03150 0.66 -1.1 695,118 + DDA3937_RS03150 0.77 -0.8 695,118 + DDA3937_RS03150 0.77 +0.5 695,125 + DDA3937_RS03150 0.78 -0.2 695,126 - DDA3937_RS03150 0.78 -0.5 695,270 + -1.6 695,296 - -1.9 695,296 - +2.6 695,298 + +1.4 695,298 + -1.6 695,298 + +0.0 695,298 + +1.4 695,298 + -1.6 695,298 + -0.2 695,299 - -1.0 695,299 - -0.8 695,299 - -0.2 695,306 + -0.1 695,353 - -0.8 695,353 - -0.3 695,353 - +1.6 695,353 - -0.7 695,353 - -1.6 695,357 - +0.0
Or see this region's nucleotide sequence