Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03135 and DDA3937_RS03140 are separated by 62 nucleotides DDA3937_RS03140 and DDA3937_RS03145 are separated by 163 nucleotides
DDA3937_RS03135: DDA3937_RS03135 - deoxyribose-phosphate aldolase, at 690,928 to 691,707
_RS03135
DDA3937_RS03140: DDA3937_RS03140 - thymidine phosphorylase, at 691,770 to 693,101
_RS03140
DDA3937_RS03145: DDA3937_RS03145 - phosphopentomutase, at 693,265 to 694,488
_RS03145
Position (kb) 691
692
693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 690.798 kb on + strand at 690.799 kb on - strand at 690.820 kb on + strand at 690.840 kb on + strand at 690.853 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.938 kb on + strand at 690.939 kb on - strand at 690.939 kb on - strand at 690.977 kb on + strand at 690.999 kb on + strand at 691.000 kb on - strand at 691.068 kb on + strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand at 691.069 kb on - strand at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.072 kb on + strand, within DDA3937_RS03135 at 691.165 kb on - strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.402 kb on - strand, within DDA3937_RS03135 at 691.527 kb on + strand, within DDA3937_RS03135 at 691.571 kb on - strand, within DDA3937_RS03135 at 691.591 kb on - strand, within DDA3937_RS03135 at 691.665 kb on + strand at 691.752 kb on + strand at 691.920 kb on - strand, within DDA3937_RS03140 at 691.920 kb on - strand, within DDA3937_RS03140 at 692.091 kb on + strand, within DDA3937_RS03140 at 692.171 kb on + strand, within DDA3937_RS03140 at 692.172 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.400 kb on - strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.456 kb on + strand, within DDA3937_RS03140 at 692.457 kb on - strand, within DDA3937_RS03140 at 692.536 kb on + strand, within DDA3937_RS03140 at 692.537 kb on - strand, within DDA3937_RS03140 at 692.758 kb on - strand, within DDA3937_RS03140 at 692.766 kb on + strand, within DDA3937_RS03140 at 692.767 kb on - strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.855 kb on - strand, within DDA3937_RS03140 at 693.072 kb on + strand at 693.072 kb on + strand at 693.072 kb on + strand at 693.124 kb on + strand at 693.125 kb on - strand at 693.133 kb on + strand at 693.134 kb on - strand at 693.134 kb on - strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.158 kb on - strand at 693.173 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.194 kb on - strand at 693.205 kb on + strand at 693.206 kb on - strand at 693.209 kb on + strand at 693.210 kb on - strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.225 kb on + strand at 693.225 kb on + strand at 693.226 kb on - strand at 693.240 kb on + strand at 693.258 kb on + strand at 693.258 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.263 kb on - strand at 693.279 kb on + strand at 693.279 kb on + strand at 693.280 kb on - strand at 693.611 kb on - strand, within DDA3937_RS03145 at 693.835 kb on + strand, within DDA3937_RS03145 at 694.054 kb on + strand, within DDA3937_RS03145 at 694.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 690,798 + -0.4 690,799 - +0.1 690,820 + -0.3 690,840 + +0.4 690,853 + -0.7 690,927 + +0.5 690,927 + -0.0 690,927 + -1.1 690,927 + -0.7 690,927 + -3.4 690,927 + -1.8 690,928 - -0.4 690,928 - +2.7 690,928 - -2.4 690,928 - +0.3 690,928 - -2.4 690,938 + -0.6 690,939 - +2.0 690,939 - -2.8 690,977 + -0.7 690,999 + -1.3 691,000 - -2.0 691,068 + DDA3937_RS03135 0.18 -1.3 691,069 - DDA3937_RS03135 0.18 +1.7 691,069 - -1.0 691,069 - -0.5 691,069 - DDA3937_RS03135 0.18 -0.3 691,069 - DDA3937_RS03135 0.18 -0.3 691,072 + DDA3937_RS03135 0.18 +0.8 691,165 - DDA3937_RS03135 0.30 +2.8 691,235 + DDA3937_RS03135 0.39 -2.0 691,235 + DDA3937_RS03135 0.39 -1.8 691,235 + DDA3937_RS03135 0.39 -0.7 691,235 + DDA3937_RS03135 0.39 -0.5 691,235 + DDA3937_RS03135 0.39 -1.0 691,235 + DDA3937_RS03135 0.39 -1.9 691,235 + DDA3937_RS03135 0.39 +0.0 691,235 + DDA3937_RS03135 0.39 -1.5 691,236 - DDA3937_RS03135 0.39 -0.7 691,236 - DDA3937_RS03135 0.39 +0.6 691,236 - DDA3937_RS03135 0.39 -1.0 691,236 - DDA3937_RS03135 0.39 +0.0 691,236 - DDA3937_RS03135 0.39 +2.0 691,344 + DDA3937_RS03135 0.53 -0.5 691,344 + DDA3937_RS03135 0.53 -0.4 691,402 - DDA3937_RS03135 0.61 +0.0 691,527 + DDA3937_RS03135 0.77 +0.5 691,571 - DDA3937_RS03135 0.82 -1.7 691,591 - DDA3937_RS03135 0.85 +0.3 691,665 + -0.6 691,752 + +0.0 691,920 - DDA3937_RS03140 0.11 -0.2 691,920 - DDA3937_RS03140 0.11 +0.0 692,091 + DDA3937_RS03140 0.24 +0.3 692,171 + DDA3937_RS03140 0.30 -0.1 692,172 - DDA3937_RS03140 0.30 -1.8 692,272 - DDA3937_RS03140 0.38 -0.7 692,272 - DDA3937_RS03140 0.38 +1.6 692,400 - DDA3937_RS03140 0.47 -0.2 692,409 + DDA3937_RS03140 0.48 +1.0 692,409 + DDA3937_RS03140 0.48 +0.0 692,410 - DDA3937_RS03140 0.48 +1.7 692,410 - DDA3937_RS03140 0.48 +1.2 692,410 - DDA3937_RS03140 0.48 -0.3 692,453 + DDA3937_RS03140 0.51 +0.4 692,453 + DDA3937_RS03140 0.51 +1.5 692,453 + DDA3937_RS03140 0.51 -1.3 692,454 - DDA3937_RS03140 0.51 +0.5 692,454 - DDA3937_RS03140 0.51 -1.5 692,454 - DDA3937_RS03140 0.51 +1.0 692,454 - DDA3937_RS03140 0.51 -0.6 692,454 - DDA3937_RS03140 0.51 +0.5 692,454 - DDA3937_RS03140 0.51 +0.4 692,454 - DDA3937_RS03140 0.51 -0.3 692,456 + DDA3937_RS03140 0.52 +0.8 692,457 - DDA3937_RS03140 0.52 +0.7 692,536 + DDA3937_RS03140 0.58 -1.0 692,537 - DDA3937_RS03140 0.58 -1.3 692,758 - DDA3937_RS03140 0.74 +0.8 692,766 + DDA3937_RS03140 0.75 -0.2 692,767 - DDA3937_RS03140 0.75 +0.5 692,854 + DDA3937_RS03140 0.81 -1.5 692,854 + DDA3937_RS03140 0.81 +0.3 692,855 - DDA3937_RS03140 0.81 -2.4 693,072 + -2.4 693,072 + +0.7 693,072 + +0.5 693,124 + -1.0 693,125 - +0.9 693,133 + +0.7 693,134 - -0.1 693,134 - +0.6 693,141 + -2.3 693,141 + -0.7 693,141 + -2.7 693,157 + +0.2 693,157 + -0.4 693,157 + -1.5 693,158 - +1.5 693,173 + -0.7 693,184 + +0.7 693,184 + +0.8 693,184 + +0.2 693,184 + +1.0 693,189 + +1.2 693,189 + -1.8 693,189 + +0.2 693,193 + -0.8 693,193 + +1.3 693,193 + -1.5 693,193 + -0.0 693,194 - +0.0 693,205 + -1.4 693,206 - +0.8 693,209 + -0.8 693,210 - +0.2 693,221 + -0.3 693,221 + +0.2 693,221 + +1.8 693,225 + -0.8 693,225 + -0.6 693,226 - +2.3 693,240 + -1.8 693,258 + -0.5 693,258 + +1.0 693,262 + -1.5 693,262 + -1.3 693,262 + +0.9 693,263 - -1.0 693,279 + +0.0 693,279 + -0.4 693,280 - -0.5 693,611 - DDA3937_RS03145 0.28 +1.8 693,835 + DDA3937_RS03145 0.47 -1.3 694,054 + DDA3937_RS03145 0.64 +0.6 694,089 + -0.6
Or see this region's nucleotide sequence