Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02755

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02750 and DDA3937_RS02755 are separated by 128 nucleotidesDDA3937_RS02755 and DDA3937_RS02760 are separated by 109 nucleotides DDA3937_RS02750: DDA3937_RS02750 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 607,513 to 610,002 _RS02750 DDA3937_RS02755: DDA3937_RS02755 - diacylglycerol kinase, at 610,131 to 610,496 _RS02755 DDA3937_RS02760: DDA3937_RS02760 - repressor LexA, at 610,606 to 611,217 _RS02760 Position (kb) 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 610.115 kb on + strandat 610.115 kb on + strandat 610.115 kb on + strandat 610.115 kb on + strandat 610.116 kb on - strandat 610.126 kb on + strandat 610.127 kb on - strandat 610.127 kb on - strandat 610.256 kb on + strand, within DDA3937_RS02755at 610.256 kb on + strand, within DDA3937_RS02755at 610.257 kb on - strand, within DDA3937_RS02755at 610.259 kb on + strand, within DDA3937_RS02755at 610.259 kb on + strand, within DDA3937_RS02755at 610.352 kb on + strand, within DDA3937_RS02755at 610.386 kb on + strand, within DDA3937_RS02755at 610.387 kb on - strand, within DDA3937_RS02755at 610.433 kb on - strand, within DDA3937_RS02755at 610.462 kb on + strandat 610.463 kb on - strandat 610.529 kb on + strandat 610.564 kb on + strandat 610.564 kb on + strandat 610.565 kb on - strandat 610.565 kb on - strandat 610.565 kb on - strandat 610.566 kb on + strandat 610.566 kb on + strandat 610.566 kb on + strandat 610.567 kb on - strandat 610.568 kb on + strandat 610.568 kb on + strandat 610.568 kb on + strandat 610.568 kb on + strandat 610.568 kb on + strandat 610.568 kb on + strandat 611.199 kb on + strandat 611.215 kb on + strandat 611.230 kb on - strandat 611.307 kb on - strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.330 kb on + strandat 611.331 kb on - strandat 611.331 kb on - strandat 611.331 kb on - strandat 611.331 kb on - strandat 611.331 kb on - strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.337 kb on + strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.338 kb on - strandat 611.346 kb on + strandat 611.346 kb on + strandat 611.347 kb on - strandat 611.347 kb on - strandat 611.347 kb on - strandat 611.369 kb on + strandat 611.369 kb on + strandat 611.369 kb on + strandat 611.370 kb on - strandat 611.370 kb on - strandat 611.370 kb on - strandat 611.387 kb on + strandat 611.400 kb on + strandat 611.400 kb on + strandat 611.401 kb on - strandat 611.408 kb on + strandat 611.422 kb on + strandat 611.422 kb on + strandat 611.423 kb on - strandat 611.436 kb on - strandat 611.436 kb on - strandat 611.439 kb on + strandat 611.439 kb on + strandat 611.440 kb on - strandat 611.440 kb on - strandat 611.440 kb on - strandat 611.466 kb on + strandat 611.467 kb on - strandat 611.469 kb on + strandat 611.469 kb on + strandat 611.474 kb on - strandat 611.486 kb on + strandat 611.486 kb on + strandat 611.487 kb on - strandat 611.490 kb on + strandat 611.490 kb on + strandat 611.490 kb on + strandat 611.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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610,115 + +1.6
610,115 + -0.3
610,115 + +0.4
610,115 + +0.8
610,116 - -0.2
610,126 + -0.5
610,127 - -0.2
610,127 - +0.5
610,256 + DDA3937_RS02755 0.34 -0.7
610,256 + DDA3937_RS02755 0.34 +1.9
610,257 - DDA3937_RS02755 0.34 +0.1
610,259 + DDA3937_RS02755 0.35 +1.1
610,259 + DDA3937_RS02755 0.35 -1.6
610,352 + DDA3937_RS02755 0.60 +2.1
610,386 + DDA3937_RS02755 0.70 +0.1
610,387 - DDA3937_RS02755 0.70 +0.8
610,433 - DDA3937_RS02755 0.83 +1.3
610,462 + -1.3
610,463 - -0.2
610,529 + +0.2
610,564 + -0.3
610,564 + -0.1
610,565 - +0.1
610,565 - +0.4
610,565 - -1.5
610,566 + -1.5
610,566 + -0.8
610,566 + -2.5
610,567 - -1.5
610,568 + -2.6
610,568 + +0.7
610,568 + +1.3
610,568 + +0.8
610,568 + -2.1
610,568 + -0.7
611,199 + -1.9
611,215 + +0.8
611,230 - +0.3
611,307 - -0.5
611,330 + +0.1
611,330 + -1.2
611,330 + +1.8
611,330 + +0.3
611,330 + -0.3
611,330 + +0.1
611,330 + +0.5
611,331 - +1.3
611,331 - -0.9
611,331 - +0.9
611,331 - +0.3
611,331 - -0.8
611,337 + -0.6
611,337 + +0.1
611,337 + -1.0
611,337 + +1.6
611,337 + -1.9
611,337 + -0.2
611,337 + -1.1
611,337 + -1.9
611,337 + +2.1
611,337 + +0.8
611,338 - -2.3
611,338 - +0.2
611,338 - -0.7
611,338 - -1.2
611,338 - +0.6
611,338 - -0.5
611,338 - -0.1
611,338 - +1.2
611,338 - -1.6
611,338 - +0.8
611,338 - -1.9
611,346 + +1.1
611,346 + -0.5
611,347 - -0.5
611,347 - -1.1
611,347 - -0.7
611,369 + +2.7
611,369 + +0.2
611,369 + -0.7
611,370 - -0.3
611,370 - -0.5
611,370 - +0.8
611,387 + +1.2
611,400 + +0.5
611,400 + -0.5
611,401 - -0.2
611,408 + -1.1
611,422 + +0.3
611,422 + -1.3
611,423 - -1.4
611,436 - -1.7
611,436 - -0.5
611,439 + +0.6
611,439 + +0.8
611,440 - +0.2
611,440 - -0.1
611,440 - +0.2
611,466 + +0.2
611,467 - -1.0
611,469 + +0.4
611,469 + -0.7
611,474 - -0.3
611,486 + +1.4
611,486 + -0.2
611,487 - -0.8
611,490 + +1.3
611,490 + -0.5
611,490 + +0.6
611,491 - +1.3

Or see this region's nucleotide sequence