Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02330 and DDA3937_RS02335 are separated by 17 nucleotides DDA3937_RS02335 and DDA3937_RS02340 are separated by 49 nucleotides DDA3937_RS02340 and DDA3937_RS02345 are separated by 277 nucleotides DDA3937_RS02345 and DDA3937_RS02350 are separated by 365 nucleotides
DDA3937_RS02330: DDA3937_RS02330 - HTH-type transcriptional activator RhaR, at 517,200 to 518,054
_RS02330
DDA3937_RS02335: DDA3937_RS02335 - hypothetical protein, at 518,072 to 518,368
_RS02335
DDA3937_RS02340: DDA3937_RS02340 - hypothetical protein, at 518,418 to 518,687
_RS02340
DDA3937_RS02345: DDA3937_RS02345 - hypothetical protein, at 518,965 to 519,222
_RS02345
DDA3937_RS02350: DDA3937_RS02350 - ABC transporter ATP-binding protein, at 519,588 to 521,288
_RS02350
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 517.971 kb on + strand at 518.050 kb on + strand at 518.050 kb on + strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.052 kb on + strand at 518.053 kb on - strand at 518.060 kb on + strand at 518.074 kb on - strand at 518.074 kb on - strand at 518.115 kb on + strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.129 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.139 kb on - strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.162 kb on - strand, within DDA3937_RS02335 at 518.190 kb on + strand at 518.275 kb on - strand at 518.275 kb on - strand, within DDA3937_RS02335 at 518.278 kb on + strand, within DDA3937_RS02335 at 518.279 kb on - strand, within DDA3937_RS02335 at 518.279 kb on - strand, within DDA3937_RS02335 at 518.286 kb on + strand, within DDA3937_RS02335 at 518.318 kb on + strand, within DDA3937_RS02335 at 518.466 kb on + strand, within DDA3937_RS02340 at 518.466 kb on + strand, within DDA3937_RS02340 at 518.469 kb on + strand, within DDA3937_RS02340 at 518.520 kb on - strand, within DDA3937_RS02340 at 518.521 kb on + strand, within DDA3937_RS02340 at 518.521 kb on + strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.577 kb on - strand, within DDA3937_RS02340 at 518.609 kb on + strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.637 kb on + strand, within DDA3937_RS02340 at 518.692 kb on + strand at 518.730 kb on + strand at 518.734 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.973 kb on + strand at 518.979 kb on + strand at 518.980 kb on - strand at 519.001 kb on + strand, within DDA3937_RS02345 at 519.002 kb on - strand, within DDA3937_RS02345 at 519.049 kb on - strand, within DDA3937_RS02345 at 519.058 kb on + strand, within DDA3937_RS02345 at 519.096 kb on + strand, within DDA3937_RS02345 at 519.126 kb on - strand, within DDA3937_RS02345 at 519.214 kb on + strand at 519.303 kb on + strand at 519.306 kb on + strand at 519.309 kb on - strand at 519.349 kb on - strand at 519.621 kb on + strand at 519.658 kb on + strand at 519.681 kb on + strand at 519.776 kb on + strand at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 520.131 kb on - strand, within DDA3937_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 517,971 + +1.4 518,050 + +0.7 518,050 + -0.7 518,051 - +0.1 518,051 - -1.9 518,051 - +3.2 518,051 - +0.7 518,052 + -1.5 518,053 - +1.1 518,060 + +0.5 518,074 - +0.3 518,074 - +0.9 518,115 + DDA3937_RS02335 0.14 +1.1 518,116 - DDA3937_RS02335 0.15 +1.2 518,116 - DDA3937_RS02335 0.15 -0.9 518,129 + DDA3937_RS02335 0.19 -0.3 518,138 + DDA3937_RS02335 0.22 +0.9 518,138 + DDA3937_RS02335 0.22 -0.9 518,139 - DDA3937_RS02335 0.23 -2.1 518,142 + DDA3937_RS02335 0.24 -0.9 518,142 + DDA3937_RS02335 0.24 -1.7 518,142 + DDA3937_RS02335 0.24 -2.1 518,142 + DDA3937_RS02335 0.24 -0.1 518,143 - DDA3937_RS02335 0.24 -0.7 518,143 - DDA3937_RS02335 0.24 -0.6 518,162 - DDA3937_RS02335 0.30 -1.6 518,190 + +0.1 518,275 - -1.2 518,275 - DDA3937_RS02335 0.68 -0.9 518,278 + DDA3937_RS02335 0.69 +1.4 518,279 - DDA3937_RS02335 0.70 +0.7 518,279 - DDA3937_RS02335 0.70 -0.2 518,286 + DDA3937_RS02335 0.72 -1.0 518,318 + DDA3937_RS02335 0.83 -1.5 518,466 + DDA3937_RS02340 0.18 -2.2 518,466 + DDA3937_RS02340 0.18 +0.2 518,469 + DDA3937_RS02340 0.19 -1.4 518,520 - DDA3937_RS02340 0.38 -1.0 518,521 + DDA3937_RS02340 0.38 -0.7 518,521 + DDA3937_RS02340 0.38 -1.7 518,522 - DDA3937_RS02340 0.39 +0.1 518,522 - DDA3937_RS02340 0.39 -0.6 518,522 - DDA3937_RS02340 0.39 -0.5 518,577 - DDA3937_RS02340 0.59 -1.2 518,609 + DDA3937_RS02340 0.71 -0.8 518,610 - DDA3937_RS02340 0.71 +1.1 518,610 - DDA3937_RS02340 0.71 -0.1 518,610 - DDA3937_RS02340 0.71 -0.2 518,610 - DDA3937_RS02340 0.71 +0.5 518,637 + DDA3937_RS02340 0.81 +0.1 518,692 + -1.2 518,730 + +0.5 518,734 + +1.5 518,970 + -1.6 518,970 + -0.7 518,971 - +1.0 518,971 - -0.2 518,971 - -0.4 518,973 + +0.1 518,979 + -0.1 518,980 - +1.0 519,001 + DDA3937_RS02345 0.14 +0.3 519,002 - DDA3937_RS02345 0.14 -1.2 519,049 - DDA3937_RS02345 0.33 -0.6 519,058 + DDA3937_RS02345 0.36 -0.9 519,096 + DDA3937_RS02345 0.51 -1.4 519,126 - DDA3937_RS02345 0.62 -1.7 519,214 + -0.1 519,303 + +0.2 519,306 + -0.5 519,309 - +0.9 519,349 - +0.9 519,621 + +1.5 519,658 + -1.3 519,681 + -0.9 519,776 + +0.1 519,920 + DDA3937_RS02350 0.20 -1.5 519,920 + DDA3937_RS02350 0.20 -0.4 519,920 + DDA3937_RS02350 0.20 -1.2 519,920 + DDA3937_RS02350 0.20 -1.5 519,920 + DDA3937_RS02350 0.20 -0.9 519,920 + DDA3937_RS02350 0.20 +0.5 519,921 - DDA3937_RS02350 0.20 +1.7 519,921 - DDA3937_RS02350 0.20 +0.6 519,921 - DDA3937_RS02350 0.20 +0.7 519,921 - DDA3937_RS02350 0.20 -1.7 519,921 - DDA3937_RS02350 0.20 -1.2 519,921 - DDA3937_RS02350 0.20 -0.1 519,921 - DDA3937_RS02350 0.20 -2.2 520,131 - DDA3937_RS02350 0.32 -1.2
Or see this region's nucleotide sequence