Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01805 and DDA3937_RS01810 are separated by 93 nucleotides DDA3937_RS01810 and DDA3937_RS01815 are separated by 184 nucleotides DDA3937_RS01815 and DDA3937_RS01820 are separated by 352 nucleotides
DDA3937_RS01805: DDA3937_RS01805 - AraC family transcriptional regulator, at 401,257 to 402,168
_RS01805
DDA3937_RS01810: DDA3937_RS01810 - DedA family protein, at 402,262 to 402,921
_RS01810
DDA3937_RS01815: DDA3937_RS01815 - cystathionine beta-lyase, at 403,106 to 404,299
_RS01815
DDA3937_RS01820: DDA3937_RS01820 - tol-pal system-associated acyl-CoA thioesterase, at 404,652 to 405,500
_RS01820
Position (kb) 403
404
405 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 402.152 kb on + strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.156 kb on - strand at 402.156 kb on - strand at 402.167 kb on - strand at 402.167 kb on - strand at 402.172 kb on + strand at 402.172 kb on + strand at 402.173 kb on - strand at 402.173 kb on - strand at 402.175 kb on + strand at 402.176 kb on - strand at 402.176 kb on - strand at 402.283 kb on - strand at 402.372 kb on - strand, within DDA3937_RS01810 at 402.372 kb on - strand, within DDA3937_RS01810 at 402.391 kb on - strand, within DDA3937_RS01810 at 402.414 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.593 kb on + strand, within DDA3937_RS01810 at 402.613 kb on + strand, within DDA3937_RS01810 at 402.614 kb on - strand, within DDA3937_RS01810 at 402.636 kb on + strand, within DDA3937_RS01810 at 402.662 kb on + strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.761 kb on - strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.943 kb on + strand at 402.943 kb on + strand at 402.943 kb on + strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.945 kb on + strand at 402.945 kb on + strand at 402.964 kb on - strand at 402.964 kb on - strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.968 kb on - strand at 403.008 kb on + strand at 403.018 kb on - strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.039 kb on - strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.051 kb on - strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.069 kb on - strand at 403.287 kb on + strand, within DDA3937_RS01815 at 403.287 kb on + strand, within DDA3937_RS01815 at 403.288 kb on - strand, within DDA3937_RS01815 at 403.288 kb on - strand, within DDA3937_RS01815 at 403.321 kb on - strand, within DDA3937_RS01815 at 403.321 kb on - strand, within DDA3937_RS01815 at 403.378 kb on + strand, within DDA3937_RS01815 at 403.445 kb on + strand, within DDA3937_RS01815 at 403.446 kb on - strand, within DDA3937_RS01815 at 403.446 kb on - strand, within DDA3937_RS01815 at 403.551 kb on + strand, within DDA3937_RS01815 at 403.551 kb on + strand, within DDA3937_RS01815 at 403.551 kb on + strand, within DDA3937_RS01815 at 403.551 kb on + strand, within DDA3937_RS01815 at 403.552 kb on - strand, within DDA3937_RS01815 at 403.552 kb on - strand, within DDA3937_RS01815 at 403.552 kb on - strand, within DDA3937_RS01815 at 403.552 kb on - strand, within DDA3937_RS01815 at 403.552 kb on - strand, within DDA3937_RS01815 at 403.587 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.693 kb on + strand, within DDA3937_RS01815 at 404.134 kb on - strand, within DDA3937_RS01815 at 404.196 kb on - strand at 404.229 kb on - strand at 404.313 kb on + strand at 404.314 kb on - strand at 404.343 kb on + strand at 404.344 kb on - strand at 404.344 kb on - strand at 404.383 kb on + strand at 404.384 kb on - strand at 404.387 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.415 kb on - strand at 404.441 kb on + strand at 404.441 kb on + strand at 404.442 kb on - strand at 404.448 kb on - strand at 404.448 kb on - strand at 404.473 kb on - strand at 404.476 kb on - strand at 404.510 kb on + strand at 404.510 kb on + strand at 404.527 kb on + strand at 404.565 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.586 kb on - strand at 404.639 kb on + strand at 404.811 kb on + strand, within DDA3937_RS01820 at 404.811 kb on + strand, within DDA3937_RS01820 at 404.812 kb on - strand at 404.984 kb on + strand, within DDA3937_RS01820 at 405.227 kb on + strand, within DDA3937_RS01820
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 402,152 + -0.7 402,153 - -0.5 402,153 - -0.0 402,153 - -1.1 402,153 - +0.3 402,155 + +1.4 402,155 + -0.1 402,155 + +0.1 402,155 + +0.2 402,155 + -0.6 402,155 + -0.3 402,155 + +0.6 402,155 + -1.9 402,156 - +1.9 402,156 - -1.1 402,167 - +1.1 402,167 - -0.5 402,172 + -1.6 402,172 + -1.1 402,173 - -0.3 402,173 - -1.8 402,175 + -0.4 402,176 - -0.7 402,176 - +2.0 402,283 - +0.2 402,372 - DDA3937_RS01810 0.17 -0.8 402,372 - DDA3937_RS01810 0.17 -0.8 402,391 - DDA3937_RS01810 0.20 -0.0 402,414 + DDA3937_RS01810 0.23 -1.1 402,477 + DDA3937_RS01810 0.33 -1.4 402,477 + DDA3937_RS01810 0.33 -0.1 402,477 + DDA3937_RS01810 0.33 -1.1 402,477 + DDA3937_RS01810 0.33 +1.4 402,593 + DDA3937_RS01810 0.50 +1.4 402,613 + DDA3937_RS01810 0.53 -1.8 402,614 - DDA3937_RS01810 0.53 -1.4 402,636 + DDA3937_RS01810 0.57 -1.1 402,662 + DDA3937_RS01810 0.61 -0.3 402,663 - DDA3937_RS01810 0.61 -0.2 402,663 - DDA3937_RS01810 0.61 +1.1 402,663 - DDA3937_RS01810 0.61 +1.0 402,761 - DDA3937_RS01810 0.76 +1.5 402,836 + DDA3937_RS01810 0.87 +0.5 402,836 + DDA3937_RS01810 0.87 +0.3 402,836 + DDA3937_RS01810 0.87 +0.4 402,837 - DDA3937_RS01810 0.87 -1.0 402,837 - DDA3937_RS01810 0.87 +0.4 402,837 - DDA3937_RS01810 0.87 -0.6 402,837 - DDA3937_RS01810 0.87 +0.4 402,943 + +0.5 402,943 + +0.2 402,943 + -0.4 402,944 - -0.4 402,944 - -0.1 402,944 - +1.7 402,944 - -1.6 402,945 + +0.3 402,945 + -1.3 402,964 - -1.4 402,964 - +0.9 402,967 + -0.1 402,967 + +1.2 402,967 + -0.8 402,968 - -0.8 403,008 + -0.4 403,018 - +1.3 403,023 + -1.7 403,023 + +1.2 403,023 + +0.2 403,024 - -1.2 403,024 - +0.3 403,024 - +1.0 403,024 - +0.2 403,024 - +0.5 403,024 - +0.5 403,039 - -0.5 403,050 + -0.6 403,050 + -1.1 403,050 + -1.9 403,050 + -0.7 403,051 - -0.1 403,052 + -2.3 403,052 + -1.3 403,052 + -0.4 403,052 + -1.8 403,052 + +0.6 403,053 - +1.2 403,053 - -2.1 403,053 - -0.8 403,053 - -1.8 403,053 - +1.5 403,053 - -0.9 403,053 - -0.4 403,053 - +1.0 403,053 - -0.4 403,053 - -0.3 403,068 + -1.5 403,068 + -0.7 403,068 + -0.0 403,068 + -1.3 403,068 + +1.1 403,069 - -1.8 403,287 + DDA3937_RS01815 0.15 -2.1 403,287 + DDA3937_RS01815 0.15 -1.1 403,288 - DDA3937_RS01815 0.15 -5.2 403,288 - DDA3937_RS01815 0.15 -2.1 403,321 - DDA3937_RS01815 0.18 -0.1 403,321 - DDA3937_RS01815 0.18 -1.0 403,378 + DDA3937_RS01815 0.23 -2.9 403,445 + DDA3937_RS01815 0.28 -2.6 403,446 - DDA3937_RS01815 0.28 +0.2 403,446 - DDA3937_RS01815 0.28 -1.4 403,551 + DDA3937_RS01815 0.37 -2.0 403,551 + DDA3937_RS01815 0.37 -4.6 403,551 + DDA3937_RS01815 0.37 -1.4 403,551 + DDA3937_RS01815 0.37 -3.4 403,552 - DDA3937_RS01815 0.37 -2.8 403,552 - DDA3937_RS01815 0.37 -2.7 403,552 - DDA3937_RS01815 0.37 -3.7 403,552 - DDA3937_RS01815 0.37 -3.3 403,552 - DDA3937_RS01815 0.37 -0.4 403,587 + DDA3937_RS01815 0.40 -3.5 403,668 + DDA3937_RS01815 0.47 +3.4 403,668 + DDA3937_RS01815 0.47 -2.1 403,668 + DDA3937_RS01815 0.47 -1.4 403,669 - DDA3937_RS01815 0.47 -2.9 403,669 - DDA3937_RS01815 0.47 -3.6 403,693 + DDA3937_RS01815 0.49 -1.6 404,134 - DDA3937_RS01815 0.86 -1.1 404,196 - -4.7 404,229 - -2.7 404,313 + +1.4 404,314 - -1.3 404,343 + -2.7 404,344 - +0.7 404,344 - -0.2 404,383 + +0.3 404,384 - -0.8 404,387 + +0.5 404,414 + +0.5 404,414 + +0.2 404,414 + -0.0 404,415 - -1.9 404,441 + -1.4 404,441 + -0.9 404,442 - -1.1 404,448 - +0.4 404,448 - -0.0 404,473 - -1.8 404,476 - -2.3 404,510 + -0.7 404,510 + +1.8 404,527 + -0.9 404,565 + -0.2 404,582 + -0.8 404,582 + -1.7 404,582 + -0.4 404,583 - -1.3 404,583 - +0.5 404,583 - +0.1 404,583 - -0.4 404,586 - -2.3 404,639 + -0.6 404,811 + DDA3937_RS01820 0.19 -0.8 404,811 + DDA3937_RS01820 0.19 -0.4 404,812 - +0.2 404,984 + DDA3937_RS01820 0.39 -1.6 405,227 + DDA3937_RS01820 0.68 +0.2
Or see this region's nucleotide sequence