Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00865 and DDA3937_RS00870 are separated by 141 nucleotides DDA3937_RS00870 and DDA3937_RS00875 are separated by 144 nucleotides DDA3937_RS00875 and DDA3937_RS00880 are separated by 13 nucleotides
DDA3937_RS00865: DDA3937_RS00865 - triose-phosphate isomerase, at 200,851 to 201,621
_RS00865
DDA3937_RS00870: DDA3937_RS00870 - YiiQ family protein, at 201,763 to 202,359
_RS00870
DDA3937_RS00875: DDA3937_RS00875 - DUF805 domain-containing protein, at 202,504 to 202,929
_RS00875
DDA3937_RS00880: DDA3937_RS00880 - ferredoxin--NADP(+) reductase, at 202,943 to 203,689
_RS00880
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 200.801 kb on + strand at 201.320 kb on + strand, within DDA3937_RS00865 at 201.650 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.705 kb on + strand at 201.705 kb on + strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.706 kb on - strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.708 kb on + strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.709 kb on - strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.711 kb on - strand at 201.748 kb on + strand at 201.839 kb on + strand, within DDA3937_RS00870 at 201.839 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.866 kb on + strand, within DDA3937_RS00870 at 201.867 kb on - strand, within DDA3937_RS00870 at 201.942 kb on + strand, within DDA3937_RS00870 at 201.943 kb on - strand, within DDA3937_RS00870 at 201.968 kb on + strand, within DDA3937_RS00870 at 201.969 kb on - strand, within DDA3937_RS00870 at 202.029 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.045 kb on + strand, within DDA3937_RS00870 at 202.046 kb on - strand, within DDA3937_RS00870 at 202.082 kb on + strand, within DDA3937_RS00870 at 202.083 kb on - strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.190 kb on + strand, within DDA3937_RS00870 at 202.191 kb on - strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.207 kb on + strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.208 kb on - strand, within DDA3937_RS00870 at 202.313 kb on - strand at 202.368 kb on + strand at 202.368 kb on + strand at 202.369 kb on - strand at 202.369 kb on - strand at 202.371 kb on + strand at 202.372 kb on - strand at 202.372 kb on - strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.381 kb on + strand at 202.382 kb on - strand at 202.382 kb on - strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.459 kb on + strand at 202.460 kb on - strand at 202.460 kb on - strand at 202.464 kb on + strand at 202.465 kb on - strand at 202.465 kb on - strand at 202.478 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.512 kb on - strand at 202.733 kb on + strand, within DDA3937_RS00875 at 202.733 kb on + strand, within DDA3937_RS00875 at 202.733 kb on + strand, within DDA3937_RS00875 at 202.734 kb on - strand, within DDA3937_RS00875 at 202.869 kb on + strand, within DDA3937_RS00875 at 202.869 kb on + strand, within DDA3937_RS00875 at 202.945 kb on - strand at 202.967 kb on - strand at 203.328 kb on + strand at 203.329 kb on - strand, within DDA3937_RS00880
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 200,801 + -1.9 201,320 + DDA3937_RS00865 0.61 -0.3 201,650 - +1.7 201,657 - -1.3 201,657 - -0.5 201,657 - +0.4 201,657 - +0.3 201,691 + -0.7 201,692 - +1.0 201,705 + -0.3 201,705 + -2.2 201,706 - +0.4 201,706 - -1.2 201,706 - -0.4 201,708 + -3.0 201,708 + -1.9 201,708 + -0.7 201,708 + -1.2 201,708 + -1.5 201,708 + -1.0 201,708 + -2.1 201,708 + -0.6 201,709 - +0.8 201,709 - +0.1 201,709 - -1.7 201,709 - +0.8 201,709 - +0.5 201,709 - -1.3 201,710 + +0.5 201,710 + +1.5 201,710 + -0.1 201,710 + +3.1 201,711 - +0.3 201,711 - -1.2 201,711 - -1.5 201,711 - +4.1 201,748 + -2.3 201,839 + DDA3937_RS00870 0.13 +0.3 201,839 + DDA3937_RS00870 0.13 +0.3 201,866 + DDA3937_RS00870 0.17 +1.1 201,866 + DDA3937_RS00870 0.17 +1.1 201,867 - DDA3937_RS00870 0.17 +1.7 201,942 + DDA3937_RS00870 0.30 +1.8 201,943 - DDA3937_RS00870 0.30 -2.2 201,968 + DDA3937_RS00870 0.34 -0.4 201,969 - DDA3937_RS00870 0.35 +0.5 202,029 + DDA3937_RS00870 0.45 -0.4 202,045 + DDA3937_RS00870 0.47 +0.5 202,045 + DDA3937_RS00870 0.47 +1.6 202,046 - DDA3937_RS00870 0.47 -1.1 202,082 + DDA3937_RS00870 0.53 -0.2 202,083 - DDA3937_RS00870 0.54 +0.3 202,190 + DDA3937_RS00870 0.72 -0.9 202,190 + DDA3937_RS00870 0.72 +1.0 202,191 - DDA3937_RS00870 0.72 -0.6 202,207 + DDA3937_RS00870 0.74 -0.9 202,207 + DDA3937_RS00870 0.74 +0.5 202,207 + DDA3937_RS00870 0.74 +0.1 202,207 + DDA3937_RS00870 0.74 -0.1 202,207 + DDA3937_RS00870 0.74 -0.3 202,208 - DDA3937_RS00870 0.75 +2.3 202,208 - DDA3937_RS00870 0.75 -0.1 202,208 - DDA3937_RS00870 0.75 +0.3 202,208 - DDA3937_RS00870 0.75 -0.8 202,313 - +1.8 202,368 + +0.8 202,368 + -1.1 202,369 - +1.5 202,369 - -1.9 202,371 + -1.9 202,372 - -0.6 202,372 - -1.4 202,381 + -1.3 202,381 + +1.4 202,381 + +0.4 202,382 - -1.3 202,382 - +0.7 202,459 + -1.4 202,459 + -0.3 202,459 + +1.0 202,460 - -0.5 202,460 - -0.6 202,464 + -1.4 202,465 - -0.3 202,465 - -0.3 202,478 - -1.2 202,512 - +1.0 202,512 - -0.2 202,512 - -1.1 202,512 - -0.1 202,733 + DDA3937_RS00875 0.54 +0.1 202,733 + DDA3937_RS00875 0.54 -1.3 202,733 + DDA3937_RS00875 0.54 +0.3 202,734 - DDA3937_RS00875 0.54 -0.3 202,869 + DDA3937_RS00875 0.86 +1.8 202,869 + DDA3937_RS00875 0.86 -1.4 202,945 - +0.6 202,967 - +1.6 203,328 + -0.7 203,329 - DDA3937_RS00880 0.52 -0.7
Or see this region's nucleotide sequence