Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00405

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00400 and DDA3937_RS00405 are separated by 3 nucleotidesDDA3937_RS00405 and DDA3937_RS00410 are separated by 16 nucleotides DDA3937_RS00400: DDA3937_RS00400 - signal transduction protein, at 93,813 to 95,483 _RS00400 DDA3937_RS00405: DDA3937_RS00405 - dihydrodipicolinate synthase family protein, at 95,487 to 96,446 _RS00405 DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509 _RS00410 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.588 kb on + strand, within DDA3937_RS00400at 94.589 kb on - strand, within DDA3937_RS00400at 94.594 kb on - strand, within DDA3937_RS00400at 94.624 kb on - strand, within DDA3937_RS00400at 94.624 kb on - strand, within DDA3937_RS00400at 94.624 kb on - strand, within DDA3937_RS00400at 94.624 kb on - strand, within DDA3937_RS00400at 94.768 kb on - strand, within DDA3937_RS00400at 95.025 kb on + strand, within DDA3937_RS00400at 95.026 kb on - strand, within DDA3937_RS00400at 95.026 kb on - strand, within DDA3937_RS00400at 95.097 kb on + strand, within DDA3937_RS00400at 95.280 kb on + strand, within DDA3937_RS00400at 95.280 kb on + strand, within DDA3937_RS00400at 95.281 kb on - strand, within DDA3937_RS00400at 95.281 kb on - strand, within DDA3937_RS00400at 95.281 kb on - strand, within DDA3937_RS00400at 95.370 kb on + strandat 95.435 kb on + strandat 95.435 kb on + strandat 95.436 kb on - strandat 95.436 kb on - strandat 95.436 kb on - strandat 95.481 kb on + strandat 95.481 kb on + strandat 95.481 kb on + strandat 95.482 kb on - strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.526 kb on + strandat 95.526 kb on + strandat 95.527 kb on - strandat 95.527 kb on - strandat 95.527 kb on - strandat 95.613 kb on + strand, within DDA3937_RS00405at 95.614 kb on - strand, within DDA3937_RS00405at 95.709 kb on - strand, within DDA3937_RS00405at 95.709 kb on - strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.947 kb on - strand, within DDA3937_RS00405at 95.952 kb on + strand, within DDA3937_RS00405at 96.006 kb on + strand, within DDA3937_RS00405at 96.144 kb on + strand, within DDA3937_RS00405at 96.145 kb on - strand, within DDA3937_RS00405at 96.180 kb on + strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.297 kb on + strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.314 kb on + strand, within DDA3937_RS00405at 96.315 kb on - strand, within DDA3937_RS00405at 96.514 kb on + strandat 96.514 kb on + strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.737 kb on - strand, within DDA3937_RS00410at 96.737 kb on - strand, within DDA3937_RS00410at 96.738 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.295 kb on - strand, within DDA3937_RS00410at 97.311 kb on + strand, within DDA3937_RS00410at 97.425 kb on + strandat 97.426 kb on - strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.446 kb on - strandat 97.446 kb on - strandat 97.446 kb on - strandat 97.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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94,588 + DDA3937_RS00400 0.46 -1.0
94,589 - DDA3937_RS00400 0.46 -0.3
94,594 - DDA3937_RS00400 0.47 -0.5
94,624 - DDA3937_RS00400 0.49 -0.7
94,624 - DDA3937_RS00400 0.49 -1.9
94,624 - DDA3937_RS00400 0.49 +0.3
94,624 - DDA3937_RS00400 0.49 -2.2
94,768 - DDA3937_RS00400 0.57 +1.0
95,025 + DDA3937_RS00400 0.73 +0.5
95,026 - DDA3937_RS00400 0.73 +0.9
95,026 - DDA3937_RS00400 0.73 -2.3
95,097 + DDA3937_RS00400 0.77 -0.8
95,280 + DDA3937_RS00400 0.88 +2.2
95,280 + DDA3937_RS00400 0.88 -1.9
95,281 - DDA3937_RS00400 0.88 -0.6
95,281 - DDA3937_RS00400 0.88 +1.3
95,281 - DDA3937_RS00400 0.88 -0.3
95,370 + -1.3
95,435 + -1.3
95,435 + +1.0
95,436 - -0.7
95,436 - +0.2
95,436 - +0.3
95,481 + -0.7
95,481 + -0.5
95,481 + -0.6
95,482 - -1.9
95,493 + -0.9
95,493 + +0.9
95,493 + -0.6
95,493 + -1.7
95,494 - -0.4
95,494 - -0.2
95,494 - -1.0
95,494 - +0.3
95,526 + +2.1
95,526 + -0.8
95,527 - -2.6
95,527 - +1.0
95,527 - -1.0
95,613 + DDA3937_RS00405 0.13 -0.4
95,614 - DDA3937_RS00405 0.13 -1.6
95,709 - DDA3937_RS00405 0.23 +0.3
95,709 - DDA3937_RS00405 0.23 -3.1
95,934 + DDA3937_RS00405 0.47 -2.1
95,934 + DDA3937_RS00405 0.47 +0.0
95,934 + DDA3937_RS00405 0.47 -0.3
95,935 - DDA3937_RS00405 0.47 -0.2
95,935 - DDA3937_RS00405 0.47 -0.8
95,935 - DDA3937_RS00405 0.47 -0.4
95,935 - DDA3937_RS00405 0.47 -0.3
95,935 - DDA3937_RS00405 0.47 -0.2
95,935 - DDA3937_RS00405 0.47 -1.3
95,935 - DDA3937_RS00405 0.47 +0.1
95,935 - DDA3937_RS00405 0.47 +0.0
95,935 - DDA3937_RS00405 0.47 +1.1
95,947 - DDA3937_RS00405 0.48 -1.8
95,952 + DDA3937_RS00405 0.48 -0.3
96,006 + DDA3937_RS00405 0.54 +0.0
96,144 + DDA3937_RS00405 0.68 +0.7
96,145 - DDA3937_RS00405 0.69 +0.1
96,180 + DDA3937_RS00405 0.72 +0.0
96,181 - DDA3937_RS00405 0.72 +0.2
96,181 - DDA3937_RS00405 0.72 +0.1
96,181 - DDA3937_RS00405 0.72 -0.3
96,181 - DDA3937_RS00405 0.72 -1.4
96,181 - DDA3937_RS00405 0.72 +0.0
96,297 + DDA3937_RS00405 0.84 +0.8
96,298 - DDA3937_RS00405 0.84 -0.4
96,298 - DDA3937_RS00405 0.84 -1.9
96,298 - DDA3937_RS00405 0.84 -1.5
96,298 - DDA3937_RS00405 0.84 +0.7
96,298 - DDA3937_RS00405 0.84 -0.1
96,314 + DDA3937_RS00405 0.86 -1.5
96,315 - DDA3937_RS00405 0.86 -2.2
96,514 + -0.2
96,514 + -0.8
96,515 - +0.2
96,515 - -0.6
96,515 - +1.6
96,515 - +0.5
96,515 - +0.3
96,515 - -0.3
96,736 + DDA3937_RS00410 0.26 -2.4
96,736 + DDA3937_RS00410 0.26 +0.3
96,736 + DDA3937_RS00410 0.26 -0.0
96,736 + DDA3937_RS00410 0.26 -0.1
96,736 + DDA3937_RS00410 0.26 +0.1
96,736 + DDA3937_RS00410 0.26 +0.3
96,736 + DDA3937_RS00410 0.26 -0.3
96,737 - DDA3937_RS00410 0.26 -1.0
96,737 - DDA3937_RS00410 0.26 +0.4
96,738 + DDA3937_RS00410 0.26 +0.1
97,219 + DDA3937_RS00410 0.72 -0.3
97,219 + DDA3937_RS00410 0.72 +0.2
97,219 + DDA3937_RS00410 0.72 -0.0
97,219 + DDA3937_RS00410 0.72 +0.0
97,295 - DDA3937_RS00410 0.79 -1.1
97,311 + DDA3937_RS00410 0.81 -1.3
97,425 + +1.5
97,426 - +0.4
97,445 + -0.9
97,445 + -1.3
97,445 + -0.0
97,445 + +0.6
97,445 + -0.2
97,445 + +1.5
97,445 + -1.5
97,446 - -0.7
97,446 - +1.3
97,446 - +0.9
97,446 - +1.0

Or see this region's nucleotide sequence