Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01970 and DDA3937_RS22980 are separated by 80 nucleotides DDA3937_RS22980 and DDA3937_RS01985 are separated by 144 nucleotides
DDA3937_RS01970: DDA3937_RS01970 - Tar ligand binding domain-containing protein, at 440,669 to 442,288
_RS01970
DDA3937_RS22980: DDA3937_RS22980 - IS3 family transposase, at 442,369 to 443,729
_RS22980
DDA3937_RS01985: DDA3937_RS01985 - valine--tRNA ligase, at 443,874 to 446,732
_RS01985
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.458 kb on - strand, within DDA3937_RS01970 at 441.527 kb on - strand, within DDA3937_RS01970 at 441.586 kb on + strand, within DDA3937_RS01970 at 441.586 kb on + strand, within DDA3937_RS01970 at 441.709 kb on + strand, within DDA3937_RS01970 at 441.722 kb on - strand, within DDA3937_RS01970 at 441.929 kb on - strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.039 kb on + strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.040 kb on - strand, within DDA3937_RS01970 at 442.069 kb on + strand, within DDA3937_RS01970 at 442.069 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand, within DDA3937_RS01970 at 442.081 kb on + strand at 442.082 kb on - strand, within DDA3937_RS01970 at 442.082 kb on - strand, within DDA3937_RS01970 at 442.082 kb on - strand, within DDA3937_RS01970 at 442.293 kb on + strand at 442.293 kb on + strand at 442.294 kb on - strand at 442.294 kb on - strand at 442.294 kb on - strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.297 kb on + strand at 442.298 kb on - strand at 442.298 kb on - strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.305 kb on - strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.310 kb on + strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.311 kb on - strand at 442.318 kb on + strand at 442.774 kb on - strand, within DDA3937_RS22980 at 442.890 kb on + strand, within DDA3937_RS22980 at 442.989 kb on + strand, within DDA3937_RS22980 at 443.528 kb on + strand, within DDA3937_RS22980 at 443.744 kb on + strand at 443.744 kb on + strand at 443.744 kb on + strand at 443.798 kb on - strand at 443.875 kb on + strand at 443.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 441,436 + DDA3937_RS01970 0.47 -1.1 441,436 + DDA3937_RS01970 0.47 +0.9 441,436 + DDA3937_RS01970 0.47 -0.4 441,436 + DDA3937_RS01970 0.47 +0.4 441,436 + DDA3937_RS01970 0.47 -1.5 441,437 - DDA3937_RS01970 0.47 +0.1 441,437 - DDA3937_RS01970 0.47 -1.7 441,437 - -0.7 441,437 - DDA3937_RS01970 0.47 -0.7 441,437 - DDA3937_RS01970 0.47 +0.5 441,437 - DDA3937_RS01970 0.47 -0.1 441,437 - DDA3937_RS01970 0.47 -1.9 441,457 + DDA3937_RS01970 0.49 +1.2 441,457 + DDA3937_RS01970 0.49 +0.0 441,458 - DDA3937_RS01970 0.49 -0.3 441,527 - DDA3937_RS01970 0.53 -0.4 441,586 + DDA3937_RS01970 0.57 +1.9 441,586 + DDA3937_RS01970 0.57 -0.7 441,709 + DDA3937_RS01970 0.64 -1.7 441,722 - DDA3937_RS01970 0.65 -0.9 441,929 - DDA3937_RS01970 0.78 -0.1 442,039 + DDA3937_RS01970 0.85 -0.7 442,039 + DDA3937_RS01970 0.85 -0.0 442,039 + DDA3937_RS01970 0.85 -1.9 442,039 + DDA3937_RS01970 0.85 -0.3 442,039 + DDA3937_RS01970 0.85 -1.0 442,039 + DDA3937_RS01970 0.85 -0.9 442,039 + DDA3937_RS01970 0.85 +0.9 442,040 - DDA3937_RS01970 0.85 +0.5 442,040 - DDA3937_RS01970 0.85 +1.0 442,040 - DDA3937_RS01970 0.85 -1.7 442,069 + DDA3937_RS01970 0.86 -1.5 442,069 + DDA3937_RS01970 0.86 +0.6 442,081 + DDA3937_RS01970 0.87 +0.3 442,081 + DDA3937_RS01970 0.87 -0.9 442,081 + DDA3937_RS01970 0.87 -0.4 442,081 + +1.9 442,082 - DDA3937_RS01970 0.87 -0.2 442,082 - DDA3937_RS01970 0.87 -1.2 442,082 - DDA3937_RS01970 0.87 -0.2 442,293 + -1.1 442,293 + -0.1 442,294 - -0.6 442,294 - -0.5 442,294 - -1.5 442,297 + +0.8 442,297 + -0.4 442,297 + +0.7 442,297 + -1.5 442,298 - +1.1 442,298 - +1.0 442,304 + -1.5 442,304 + +0.4 442,305 - -0.1 442,310 + -0.0 442,310 + -2.0 442,310 + +0.5 442,310 + -0.2 442,311 - -1.1 442,311 - -1.7 442,311 - +0.3 442,311 - +1.3 442,311 - -2.3 442,318 + -3.1 442,774 - DDA3937_RS22980 0.30 +1.2 442,890 + DDA3937_RS22980 0.38 +0.4 442,989 + DDA3937_RS22980 0.46 +1.2 443,528 + DDA3937_RS22980 0.85 -0.3 443,744 + -2.0 443,744 + +0.3 443,744 + +1.9 443,798 - -1.0 443,875 + -0.7 443,876 - -0.4
Or see this region's nucleotide sequence